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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339980 (54 seq.)
>W1711167582
LVWL01000019
Campylobacterota
Campylobacter concisus [LVWL]
37099
37173
+
Met
CAT
[ENA]
¡û
>W1711326833
MBGA01000025
Campylobacterota
Campylobacter pinnipediorum subsp. caledonicus [MBGA]
452943
452869
-
Met
CAT
[ENA]
¡û
>W1711350420
MCRK01000024
Campylobacterota
Campylobacter pinnipediorum subsp. pinnipediorum [MCRK]
39903
39977
+
Met
CAT
[ENA]
¡û
>W1711350462
MCRL01000020
Campylobacterota
Campylobacter pinnipediorum subsp. pinnipediorum [MCRL]
39915
39989
+
Met
CAT
[ENA]
¡û
>W1711351847
MDCT01000007
Campylobacterota
Campylobacter pinnipediorum RM18812 [MDCT]
46635
46561
-
Met
CAT
[ENA]
¡û
>W1711351894
MDCU01000017
Campylobacterota
Campylobacter pinnipediorum RM18813 [MDCU]
39756
39830
+
Met
CAT
[ENA]
¡û
>W1711351905
MDCV01000001
Campylobacterota
Campylobacter pinnipediorum RM18906 [MDCV]
265325
265399
+
Met
CAT
[ENA]
¡û
>C171017234
CP012546
Campylobacterota
Campylobacter pinnipediorum subsp. pinnipediorum RM17260 [CP012546]
600344
600418
+
Met
CAT
-
¡û
>C171017278
CP012547
Campylobacterota
Campylobacter pinnipediorum subsp. pinnipediorum RM17261 [CP012547]
536134
536208
+
Met
CAT
-
¡û
>C171017322
CP012548
Campylobacterota
Campylobacter pinnipediorum subsp. pinnipediorum RM17262 [CP012548]
539470
539544
+
Met
CAT
-
¡û
>C171055140
CP017018
Campylobacterota
Campylobacter pinnipediorum subsp. caledonicus M302/10/6 [CP017018]
611911
611985
+
Met
CAT
-
¡û
>C171059641
CP017258
Campylobacterota
Campylobacter pinnipediorum subsp. caledonicus M341/11/05 [CP017258]
631188
631262
+
Met
CAT
-
¡û
>W141052968
ANNE01000030
Campylobacterota
Campylobacter concisus UNSW3 [ANNE]
8128
8054
-
Met
CAT
[ENA]
¡û
>WENV180698185
ODDE01067941
[ODDE] human metagenome; G_DNA_Supragingival plaque
92
18
-
fMet
CAT
[ENA]
¢þ
>WENV180774428
ODIJ01023246
[ODIJ] human metagenome; G_DNA_Tongue dorsum
391
317
-
fMet
CAT
[ENA]
¢þ
>WENV180783303
ODIQ01004311
[ODIQ] human metagenome; G_DNA_Tongue dorsum
3991
4065
+
fMet
CAT
[ENA]
¢þ
>WENV180788861
ODIS01134253
[ODIS] human metagenome; G_DNA_Supragingival plaque
292
366
+
fMet
CAT
[ENA]
¢þ
>WENV180819703
ODJR01000337
[ODJR] human metagenome; G_DNA_Tongue dorsum
1227
1301
+
fMet
CAT
[ENA]
¢þ
>WENV180830728
ODKB01010444
[ODKB] human metagenome; G_DNA_Tongue dorsum
1101
1175
+
fMet
CAT
[ENA]
¢þ
>WENV180853241
ODKW01049478
[ODKW] human metagenome; G_DNA_Tongue dorsum
21
95
+
fMet
CAT
[ENA]
¢þ
>WENV180855055
ODKX01026634
[ODKX] human metagenome; G_DNA_Tongue dorsum
280
206
-
fMet
CAT
[ENA]
¢þ
>WENV180897951
ODNI01144328
[ODNI] human metagenome; G_DNA_Tongue dorsum
81
7
-
fMet
CAT
[ENA]
¢þ
>WENV180902693
ODOK01141076
[ODOK] human metagenome; G_DNA_Tongue dorsum
131
205
+
fMet
CAT
[ENA]
¢þ
>WENV180929806
ODTN01015081
[ODTN] human metagenome; G_DNA_Tongue dorsum
131
205
+
fMet
CAT
[ENA]
¢þ
>WENV180946340
ODUD01039822
[ODUD] human metagenome; G_DNA_Tongue dorsum
83
9
-
fMet
CAT
[ENA]
¢þ
>WENV180976117
ODUY01047297
[ODUY] human metagenome; G_DNA_Supragingival plaque
280
354
+
fMet
CAT
[ENA]
¢þ
>WENV181058447
ODYL01011801
[ODYL] human metagenome; G_DNA_Tongue dorsum
1664
1738
+
fMet
CAT
[ENA]
¢þ
>WENV181074392
OEAO01007141
[OEAO] human metagenome; G_DNA_Tongue dorsum
1844
1770
-
fMet
CAT
[ENA]
¢þ
>WENV181078903
OEAS01000982
[OEAS] human metagenome; G_DNA_Supragingival plaque
12029
11955
-
fMet
CAT
[ENA]
¢þ
>WENV181084753
OEAX01000070
[OEAX] human metagenome; G_DNA_Tongue dorsum
18303
18377
+
fMet
CAT
[ENA]
¢þ
>WENV181112924
OEEL01006345
[OEEL] human metagenome; G_DNA_Tongue dorsum
3100
3174
+
fMet
CAT
[ENA]
¢þ
>WENV181112965
OEEL01007090
[OEEL] human metagenome; G_DNA_Tongue dorsum
3154
3080
-
fMet
CAT
[ENA]
¢þ
>WENV181135096
OEGG01002814
[OEGG] human metagenome; G_DNA_Tongue dorsum
2302
2228
-
fMet
CAT
[ENA]
¢þ
>WENV181181325
OEJU01021233
[OEJU] human metagenome; G_DNA_Supragingival plaque
365
439
+
fMet
CAT
[ENA]
¢þ
>WENV181537464
OGHW01018485
[OGHW] metagenome; Human gut stool
95
21
-
fMet
CAT
[ENA]
¢þ
>C08003117
CP000792
Campylobacterota
Campylobacter concisus 13826 [CP000792]
947023
946952
-
Met
CAT
[Ensembl]
¡û
>W1810148175
PIRH01000004
Campylobacterota
Campylobacter concisus P6CDO1 [PIRH]
130250
130324
+
Met
CAT
[ENA]
¡û
>W1810148237
PIRJ01000005
Campylobacterota
Campylobacter concisus P1CDO2 [PIRJ]
28458
28384
-
Met
CAT
[ENA]
¡û
>W1810148956
PISB01000002
Campylobacterota
Campylobacter concisus H7O-S1 [PISB]
12198
12124
-
Met
CAT
[ENA]
¡û
>W1810228706
POYO01000182
Campylobacterota
Campylobacter concisus AAUH-49UCpp-a [POYO]
76657
76731
+
Met
CAT
[ENA]
¡û
>W1810228812
POYR01000101
Campylobacterota
Campylobacter concisus AAUH-20HCsig-a [POYR]
30401
30327
-
Met
CAT
[ENA]
¡û
>W1810229086
POYY01000166
Campylobacterota
Campylobacter concisus AAUH-9HCce [POYY]
6220
6146
-
Met
CAT
[ENA]
¡û
>W1810229687
POZP01000019
Campylobacterota
Campylobacter concisus AAUH-51UCf [POZP]
34664
34590
-
Met
CAT
[ENA]
¡û
>W1810229944
POZW01000014
Campylobacterota
Campylobacter concisus AAUH-55UCtra-a [POZW]
26599
26525
-
Met
CAT
[ENA]
¡û
>W1810230116
PPAB01000002
Campylobacterota
Campylobacter concisus AAUH-8HCo [PPAB]
4805
4879
+
Met
CAT
[ENA]
¡û
>W1810230260
PPAE01000046
Campylobacterota
Campylobacter concisus AAUH-12CDti4-a [PPAE]
253519
253445
-
Met
CAT
[ENA]
¡û
>W1810230357
PPAH01000006
Campylobacterota
Campylobacter concisus AAUH-12CDti5-a [PPAH]
181054
180980
-
Met
CAT
[ENA]
¡û
>W1810230586
PPAM01000010
Campylobacterota
Campylobacter concisus AAUH-12CDce [PPAM]
577650
577576
-
Met
CAT
[ENA]
¡û
>W1810230658
PPAO01000020
Campylobacterota
Campylobacter concisus AAUH-8UCpp-a [PPAO]
6914
6840
-
Met
CAT
[ENA]
¡û
>W1810230829
PPAS01000029
Campylobacterota
Campylobacter concisus AAUH-37UCo-a [PPAS]
7859
7785
-
Met
CAT
[ENA]
¡û
>W1810231880
PPBT01000020
Campylobacterota
Campylobacter concisus AAUH-8UCpp [PPBT]
6914
6840
-
Met
CAT
[ENA]
¡û
>W1810232243
PPCB01000227
Campylobacterota
Campylobacter concisus AAUH-5CDo [PPCB]
54571
54645
+
Met
CAT
[ENA]
¡û
>W1810232406
PPCG01000009
Campylobacterota
Campylobacter concisus AAUH-20UCf [PPCG]
2067
2141
+
Met
CAT
[ENA]
¡û
>W121111424
ALJJ01000013
Campylobacterota
Campylobacter sp. FOBRC14 [ALJJ]
10275
10201
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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