This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339996 (5 seq.)
>WENV180001727
FLNX01003028
[FLNX] bioreactor metagenome; Moose rumen
65532
65458
-
Trp
CCA
[ENA]
¡û
>WENV180653931
OCVV010250681
[OCVV] gut metagenome; gut
283
209
-
Trp
CCA
[ENA]
¡û
>WENV180653932
OCVV010250681
[OCVV] gut metagenome; gut
283
209
-
Trp
CCA
[ENA]
¡û
>C241008280
AP025288
Spirochaetota
Treponema saccharophilum JCM 32279 [AP025288]
360595
360669
+
Trp
CCA
-
¡û
>W121017622
AGRW01000053
Spirochaetota
Treponema saccharophilum DSM 2985 [AGRW]
93643
93569
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK