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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.340010 (24 seq.)
>W1712104744
NIPZ01000016
Alphaproteobacteria
Paracoccus yeei [NIPZ]
147075
147149
+
Val
TAC
[ENA]
¡û
>C171107676
CP020442
Alphaproteobacteria
Paracoccus yeei FDAARGOS_252 [CP020442]
3250437
3250363
-
Val
TAC
-
¡û
>C016051
CP000490
Alphaproteobacteria
Paracoccus denitrificans PD1222 [CP000489, CP000490]
1145725
1145799
+
Val
TAC
[Ensembl]
¡û
>WENV183729509
PJTQ01056804
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
259
185
-
Val
TAC
[ENA]
¢þ
>W09103033
AAIT01000001
Alphaproteobacteria
Paracoccus denitrificans PD1222 [AAIT]
463619
463693
+
Val
TAC
[ENA]
¡û
>C181099786
CP024422
Alphaproteobacteria
Paracoccus yeei TT13 [CP024422]
3118623
3118697
+
Val
TAC
-
¡û
>C181190837
CP030239
Alphaproteobacteria
Paracoccus mutanolyticus RSP-02 [CP030239]
3222402
3222328
-
Val
TAC
-
¡û
>C181203396
LN832559
Alphaproteobacteria
Paracoccus aminovorans [LN832559]
1628308
1628382
+
Val
TAC
-
¡û
>C191073574
CP031078
Alphaproteobacteria
Paracoccus yeei CCUG 32053 [CP031078]
1477557
1477631
+
Val
TAC
-
¡û
>C191134411
CP035091
Alphaproteobacteria
Paracoccus denitrificans ATCC 19367 [CP035090, CP035091]
1145446
1145520
+
Val
TAC
-
¡û
>W141558871
JHWH01000013
Alphaproteobacteria
Paracoccus yeei ATCC BAA-599 [JHWH]
17743
17669
-
Val
TAC
[ENA]
¡û
>W1810235963
PPGA01000001
Alphaproteobacteria
Paracoccus denitrificans ISTOD1 [PPGA]
242278
242352
+
Val
TAC
[ENA]
¡û
>W1810585328
QFCQ01000093
Alphaproteobacteria
Paracoccus thiocyanatus SST [QFCQ]
10047
9973
-
Val
TAC
[ENA]
¡û
>W1810759489
QPJL01000015
Alphaproteobacteria
Paracoccus lutimaris CECT 8525 [QPJL]
1264
1190
-
Val
TAC
[ENA]
¡û
>W1810862233
QTUJ01000001
Alphaproteobacteria
Paracoccus versutus DSM 17099 [QTUJ]
789240
789314
+
Val
TAC
[ENA]
¡û
>C11117040
CP002897
Alphaproteobacteria
Paracoccus denitrificans [CP002897]
1688786
1688860
+
Val
TAC
[Ensembl]
¡û
>W121060029
AJFB01003918
Alphaproteobacteria
Paracoccus denitrificans SD1 [AJFB]
162
236
+
Val
TAC
[ENA]
¡û
>W1610049822
BBFH01000093
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
605
679
+
Val
TAC
[ENA]
¡û
>W1710046221
BBFH01000093
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
605
679
+
Val
TAC
[ENA]
¡û
>W1710518460
FNEA01000006
Alphaproteobacteria
Paracoccus denitrificans [FNEA]
166262
166336
+
Val
TAC
[ENA]
¡û
>W1710563576
FOPU01000003
Alphaproteobacteria
Paracoccus aminovorans [FOPU]
150785
150859
+
Val
TAC
[ENA]
¡û
>W1710574682
FOYK01000006
Alphaproteobacteria
Paracoccus denitrificans [FOYK]
67682
67608
-
Val
TAC
[ENA]
¡û
>W1710581774
FPKI01000022
Alphaproteobacteria
Paracoccus pantotrophus [FPKI]
41483
41557
+
Val
TAC
[ENA]
¡û
>W1710596198
FTMK01000014
Alphaproteobacteria
Paracoccus thiocyanatus [FTMK]
17183
17109
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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