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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.340011 (42 seq.)
>W1710900531
LNKA01000001
Gammaproteobacteria
Legionella adelaidensis [LNKA]
1227875
1227949
+
Gln
TTG
[ENA]
¡û
>W1710919788
LNXY01000020
Gammaproteobacteria
Legionella drozanskii LLAP-1 [LNXY]
744992
745066
+
Gln
TTG
[ENA]
¡û
>W1710920150
LNYH01000058
Gammaproteobacteria
Legionella israelensis [LNYH]
45679
45753
+
Gln
TTG
[ENA]
¡û
>W1710920306
LNYL01000027
Gammaproteobacteria
Legionella maceachernii [LNYL]
119239
119313
+
Gln
TTG
[ENA]
¡û
>W1710920341
LNYM01000007
Gammaproteobacteria
Legionella micdadei [LNYM]
33898
33972
+
Gln
TTG
[ENA]
¡û
>W1710920461
LNYP01000006
Gammaproteobacteria
Legionella oakridgensis [LNYP]
132602
132528
-
Gln
TTG
[ENA]
¡û
>W1710920649
LNYT01000020
Gammaproteobacteria
Legionella rubrilucens [LNYT]
212048
211974
-
Gln
TTG
[ENA]
¡û
>C171110840
CP020614
Gammaproteobacteria
Legionella micdadei NZ2015 [CP020614]
307637
307563
-
Gln
TTG
-
¡û
>C171110883
CP020615
Gammaproteobacteria
Legionella micdadei NZ2016 [CP020615]
309178
309104
-
Gln
TTG
-
¡û
>WENV180063168
MPLX02335589
[MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter
375
449
+
Gln
TTG
[ENA]
¢þ
>WENV180083987
MPMD02132298
[MPMD] marine metagenome; 120 m water sample filtered on 30 um supor filter
814
740
-
Gln
TTG
[ENA]
¢þ
>W141220974
AZYK01000020
Gammaproteobacteria
Legionella oakridgensis RV-2-2007 [AZYK]
61397
61323
-
Gln
TTG
[ENA]
¡û
>WENV183799591
PVBE010520465
[PVBE] marine metagenome; water
3663
3589
-
Gln
TTG
[ENA]
¢þ
>WENV170370439
CETR01102522
[CETR] marine metagenome genome assembly TARA_112_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
217
291
+
Gln
TTG
[ENA]
¢þ
>C191158527
CP038254
Gammaproteobacteria
Legionella israelensis HL-0427-4011 [CP038254]
2637345
2637419
+
Gln
TTG
-
¡û
>C191159125
CP038273
Gammaproteobacteria
Legionella israelensis Bercovier 4 [CP038273]
2167057
2166983
-
Gln
TTG
-
¡û
>C191209301
LR134374
Gammaproteobacteria
Legionella spiritensis NCTC12082 [LR134374]
1964254
1964328
+
Gln
TTG
-
¡û
>W141561535
JHYN01000014
Gammaproteobacteria
Legionella geestiana DSM 21217 [JHYN]
29918
29992
+
Gln
TTG
[ENA]
¡û
>C141003246
CP004006
Gammaproteobacteria
Legionella oakridgensis ATCC 33761 = DSM 21215 [CP004006]
489649
489575
-
Gln
TTG
[Ensembl]
¡û
>W1910729937
MHBB01000060
Gammaproteobacteria
Legionellales bacterium RIFCSPHIGHO2_12_FULL_35_11 [MHBB]
1380
1306
-
Gln
TTG
[ENA]
¡û
>W1910729992
MHBD01000060
Gammaproteobacteria
Legionellales bacterium RIFCSPHIGHO2_12_FULL_42_9 [MHBD]
1755
1681
-
Gln
TTG
[ENA]
¡û
>W1910730004
MHBD01000210
Gammaproteobacteria
Legionellales bacterium RIFCSPHIGHO2_12_FULL_42_9 [MHBD]
355
429
+
Gln
TTG
[ENA]
¡û
>W1911662154
QFGE01000006
Gammaproteobacteria
Legionella taurinensis WH04 [QFGE]
72820
72894
+
Gln
TTG
[ENA]
¡û
>W1911662238
QFGG01000007
Gammaproteobacteria
Legionella taurinensis WH02 [QFGG]
72820
72894
+
Gln
TTG
[ENA]
¡û
>W1911662348
QFGJ01000005
Gammaproteobacteria
Legionella taurinensis WC03 [QFGJ]
72950
73024
+
Gln
TTG
[ENA]
¡û
>W1911662401
QFGK01000006
Gammaproteobacteria
Legionella taurinensis WC02 [QFGK]
72950
73024
+
Gln
TTG
[ENA]
¡û
>W1911662440
QFGL01000005
Gammaproteobacteria
Legionella taurinensis WC01 [QFGL]
72950
73024
+
Gln
TTG
[ENA]
¡û
>W1810531353
QCXK01000006
Gammaproteobacteria
Legionella taurinensis Genessee01 [QCXK]
72820
72894
+
Gln
TTG
[ENA]
¡û
>C151103464
LN614830
Gammaproteobacteria
Legionella micdadei ATCC 33218 [LN614830]
308205
308131
-
Gln
TTG
[Ensembl]
¡û
>W1610584585
LCUA01000006
Gammaproteobacteria
Legionella oakridgensis [LCUA]
61457
61383
-
Gln
TTG
[ENA]
¡û
>W1610584643
LCUB01000006
Gammaproteobacteria
Legionella micdadei [LCUB]
156384
156310
-
Gln
TTG
[ENA]
¡û
>W1610760518
LNKA01000001
Gammaproteobacteria
Legionella adelaidensis [LNKA]
1227875
1227949
+
Gln
TTG
[ENA]
¡û
>W1610778048
LNYH01000058
Gammaproteobacteria
Legionella israelensis [LNYH]
45679
45753
+
Gln
TTG
[ENA]
¡û
>W1610778204
LNYL01000027
Gammaproteobacteria
Legionella maceachernii [LNYL]
119239
119313
+
Gln
TTG
[ENA]
¡û
>W1610778239
LNYM01000007
Gammaproteobacteria
Legionella micdadei [LNYM]
33898
33972
+
Gln
TTG
[ENA]
¡û
>W1610778359
LNYP01000006
Gammaproteobacteria
Legionella oakridgensis [LNYP]
132602
132528
-
Gln
TTG
[ENA]
¡û
>W1610778547
LNYT01000020
Gammaproteobacteria
Legionella rubrilucens [LNYT]
212048
211974
-
Gln
TTG
[ENA]
¡û
>W1710507468
FMVH01000020
Gammaproteobacteria
Legionella israelensis DSM 19235 [FMVH]
15081
15155
+
Gln
TTG
[ENA]
¡û
>W1710507751
FMVN01000002
Gammaproteobacteria
Legionella micdadei [FMVN]
271025
270951
-
Gln
TTG
[ENA]
¡û
>W1710601529
FUXJ01000010
Gammaproteobacteria
Legionella maceachernii [FUXJ]
60400
60474
+
Gln
TTG
[ENA]
¡û
>W1710703776
LCUA01000006
Gammaproteobacteria
Legionella oakridgensis [LCUA]
61457
61383
-
Gln
TTG
[ENA]
¡û
>W1710703834
LCUB01000006
Gammaproteobacteria
Legionella micdadei [LCUB]
156384
156310
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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