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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.340016 (85 seq.)
>W1711066637
LSCZ01000052
Actinomycetota
Corynebacterium sp. DNF00584 [LSCZ]
25822
25748
-
Val
CAC
[ENA]
¡û
>W1711080559
LSRB01000083
Actinomycetota
Corynebacterium sp. CMW7794 [LSRB]
128582
128656
+
Val
CAC
[ENA]
¡û
>W1711092394
LTEB01000028
Actinomycetota
Corynebacterium simulans [LTEB]
102816
102890
+
Val
CAC
[ENA]
¡û
>W1711093776
LTFH01000063
Actinomycetota
Corynebacterium sp. HMSC062E11 HMSC062E11 [LTFH]
33822
33748
-
Val
CAC
[ENA]
¡û
>W1711094352
LTFV01000066
Actinomycetota
Corynebacterium sp. HMSC078A10 [LTFV]
81182
81108
-
Val
CAC
[ENA]
¡û
>W1711094428
LTFX01000030
Actinomycetota
Corynebacterium sp. HMSC076G08 HMSC076G08 [LTFX]
86641
86567
-
Val
CAC
[ENA]
¡û
>W1711094973
LTGK01000079
Actinomycetota
Corynebacterium sp. HMSC068H04 HMSC068H04 [LTGK]
1111
1185
+
Val
CAC
[ENA]
¡û
>W1711095271
LTGR01000006
Actinomycetota
Corynebacterium sp. HMSC062A03 [LTGR]
106110
106184
+
Val
CAC
[ENA]
¡û
>W1711096005
LTHJ01000040
Actinomycetota
Corynebacterium sp. HMSC065D07 [LTHJ]
80918
80844
-
Val
CAC
[ENA]
¡û
>W1711096406
LTHS01000044
Actinomycetota
Corynebacterium sp. HMSC077B05 [LTHS]
126900
126974
+
Val
CAC
[ENA]
¡û
>W1711096808
LTIB01000108
Actinomycetota
Corynebacterium sp. HMSC071F07 [LTIB]
5376
5302
-
Val
CAC
[ENA]
¡û
>W1711097220
LTIM01000007
Actinomycetota
Corynebacterium sp. HMSC072A02 [LTIM]
80801
80729
-
Val
CAC
[ENA]
¡û
>W1711098657
LTJU01000016
Actinomycetota
Corynebacterium sp. HMSC055A01 [LTJU]
81916
81842
-
Val
CAC
[ENA]
¡û
>W1711099159
LTKF01000117
Actinomycetota
Corynebacterium sp. HMSC072G08 [LTKF]
126980
127054
+
Val
CAC
[ENA]
¡û
>W1711099773
LTKT01000030
Actinomycetota
Corynebacterium sp. HMSC074E01 [LTKT]
79679
79607
-
Val
CAC
[ENA]
¡û
>W1711106046
LTRK01000069
Actinomycetota
Corynebacterium sp. HMSC036D03 [LTRK]
295981
295907
-
Val
CAC
[ENA]
¡û
>W1711106091
LTRL01000055
Actinomycetota
Corynebacterium sp. HMSC036D02 [LTRL]
869
941
+
Val
CAC
[ENA]
¡û
>W1711106214
LTRQ01000025
Actinomycetota
Corynebacterium sp. HMSC035E02 [LTRQ]
86572
86498
-
Val
CAC
[ENA]
¡û
>W1711106927
LTSH01000097
Actinomycetota
Corynebacterium sp. HMSC056F09 [LTSH]
53217
53143
-
Val
CAC
[ENA]
¡û
>W1711108515
LTTU01000082
Actinomycetota
Corynebacterium sp. HMSC065A05 [LTTU]
25819
25745
-
Val
CAC
[ENA]
¡û
>W1711108557
LTTW01000015
Actinomycetota
Corynebacterium sp. HMSC066C02 [LTTW]
477
551
+
Val
CAC
[ENA]
¡û
>W1711108704
LTTZ01000044
Actinomycetota
Corynebacterium sp. HMSC068G04 [LTTZ]
564
638
+
Val
CAC
[ENA]
¡û
>W1711109284
LTUN01000032
Actinomycetota
Corynebacterium sp. HMSC074C01 [LTUN]
775
847
+
Val
CAC
[ENA]
¡û
>W1711109354
LTUP01000002
Actinomycetota
Corynebacterium sp. HMSC077D10 [LTUP]
25817
25743
-
Val
CAC
[ENA]
¡û
>W1711109493
LTUR01000097
Actinomycetota
Corynebacterium sp. HMSC078C09 [LTUR]
81171
81097
-
Val
CAC
[ENA]
¡û
>W1711109786
LTUY01000040
Actinomycetota
Corynebacterium sp. HMSC059E07 HMSC059E07 [LTUY]
81450
81376
-
Val
CAC
[ENA]
¡û
>W1711110599
LTVS01000007
Actinomycetota
Corynebacterium sp. HMSC072D12 [LTVS]
690
764
+
Val
CAC
[ENA]
¡û
>W1711110821
LTVX01000016
Actinomycetota
Corynebacterium sp. HMSC076D02 [LTVX]
261
335
+
Val
CAC
[ENA]
¡û
>W1711110983
LTWA01000095
Actinomycetota
Corynebacterium sp. HMSC074H12 [LTWA]
894
968
+
Val
CAC
[ENA]
¡û
>W1711111641
LTWQ01000061
Actinomycetota
Corynebacterium sp. HMSC056E09 [LTWQ]
81223
81149
-
Val
CAC
[ENA]
¡û
>W1711112399
LTXJ01000057
Actinomycetota
Corynebacterium sp. HMSC077D03 [LTXJ]
257
331
+
Val
CAC
[ENA]
¡û
>W1711186314
LWOC01000044
Actinomycetota
Corynebacterium sp. HMSC06G04 [LWOC]
401
475
+
Val
CAC
[ENA]
¡û
>W1711186427
LWOF01000027
Actinomycetota
Corynebacterium sp. HMSC06C06 [LWOF]
83874
83800
-
Val
CAC
[ENA]
¡û
>W1711186622
LWOJ01000019
Actinomycetota
Corynebacterium sp. HMSC05D08 [LWOJ]
436
510
+
Val
CAC
[ENA]
¡û
>W1711186695
LWOK01000031
Actinomycetota
Corynebacterium sp. HMSC05D03 [LWOK]
82868
82794
-
Val
CAC
[ENA]
¡û
>W1711188289
LWQH01000079
Actinomycetota
Corynebacterium sp. HMSC069E04 [LWQH]
82743
82669
-
Val
CAC
[ENA]
¡û
>C171117455
CP021252
Actinomycetota
Corynebacterium striatum KC-Na-01 [CP021252]
1339395
1339321
-
Val
CAC
-
¡û
>WENV180838969
ODKH01005634
[ODKH] human metagenome; G_DNA_Anterior nares
343
269
-
Val
CAC
[ENA]
¢þ
>WENV180967027
ODUS01006182
[ODUS] human metagenome; G_DNA_L_Retroauricular crease
296
224
-
Val
CAC
[ENA]
¢þ
>WENV181326271
OFLL01000032
[OFLL] metagenome; faeces
79875
79801
-
Val
CAC
[ENA]
¢þ
>WENV182636198
OJKZ01000876
[OJKZ] metagenome; surface
321
395
+
Val
CAC
[ENA]
¢þ
>WENV182640415
OJLB01009580
[OJLB] metagenome; surface
542
470
-
Val
CAC
[ENA]
¢þ
>WENV182641930
OJLL01000022
[OJLL] metagenome; surface
52872
52798
-
Val
CAC
[ENA]
¢þ
>WENV182643388
OJLU01005696
[OJLU] metagenome; surface
518
446
-
Val
CAC
[ENA]
¢þ
>WENV182644080
OJLW01007414
[OJLW] metagenome; surface
2155
2081
-
Val
CAC
[ENA]
¢þ
>WENV182645293
OJLY01008024
[OJLY] metagenome; surface
318
392
+
Val
CAC
[ENA]
¢þ
>WENV182646587
OJMC01000009
[OJMC] metagenome; surface
67700
67774
+
Val
CAC
[ENA]
¢þ
>WENV182671602
OJNM01000459
[OJNM] metagenome; surface
14241
14169
-
Val
CAC
[ENA]
¢þ
>WENV182835398
OKFN01000031
[OKFN] human gut metagenome; human gut
1049
1123
+
Val
CAC
[ENA]
¢þ
>WENV183090806
OLKE01036427
[OLKE] metagenome; surface
291
219
-
Val
CAC
[ENA]
¢þ
>W09122441
ACGE01000049
Actinomycetota
Corynebacterium striatum ATCC 6940 [ACGE]
35969
35895
-
Val
CAC
[ENA]
¡û
>W09127855
ACLH01000082
Actinomycetota
Corynebacterium aurimucosum ATCC 700975 [ACLH]
12114
12188
+
Val
CAC
[ENA]
¡û
>C181108815
CP024931
Actinomycetota
Corynebacterium striatum 215 [CP024931]
564462
564388
-
Val
CAC
-
¡û
>C181108824
CP024932
Actinomycetota
Corynebacterium striatum 216 [CP024932]
794027
794101
+
Val
CAC
-
¡û
>W1910180454
BJLD01000002
Actinomycetota
Corynebacterium striatum NBRC 15291 [BJLD]
543917
543844
-
Val
CAC
[ENA]
¡û
>W1910598683
LBCN01000044
Actinomycetota
Corynebacterium striatum 2023 [LBCN]
116541
116467
-
Val
CAC
[ENA]
¡û
>W1910640635
LTBF01000008
Actinomycetota
Corynebacterium striatum 2230 [LTBF]
143002
142928
-
Val
CAC
[ENA]
¡û
>W1910640726
LTBH01000008
Actinomycetota
Corynebacterium striatum 2247 [LTBH]
491820
491746
-
Val
CAC
[ENA]
¡û
>C09102739
CP001601
Actinomycetota
Corynebacterium aurimucosum ATCC 700975 DSM 44827; ATCC 700975 [CP001601]
1596899
1596973
+
Val
CAC
[Ensembl]
¡û
>W1911204355
NRIL01000013
Actinomycetota
Corynebacterium striatum 2130 [NRIL]
53613
53539
-
Val
CAC
[ENA]
¡û
>W1911204429
NRIM01000016
Actinomycetota
Corynebacterium striatum 2237 [NRIM]
32234
32160
-
Val
CAC
[ENA]
¡û
>W1911204452
NRIM01000036
Actinomycetota
Corynebacterium striatum 2237 [NRIM]
629
703
+
Val
CAC
[ENA]
¡û
>W1911204491
NRIN01000017
Actinomycetota
Corynebacterium striatum 2296 [NRIN]
112516
112442
-
Val
CAC
[ENA]
¡û
>W1911204550
NRIO01000014
Actinomycetota
Corynebacterium striatum 2308 [NRIO]
37005
36931
-
Val
CAC
[ENA]
¡û
>W1911204617
NRIP01000019
Actinomycetota
Corynebacterium striatum 2425 [NRIP]
21202
21128
-
Val
CAC
[ENA]
¡û
>W1911390868
NWBP01000022
Actinomycetota
Corynebacterium accolens AH4003 [NWBP]
102390
102463
+
Val
CAC
[ENA]
¡û
>W1810187546
PKHR01000001
Actinomycetota
Corynebacterium aurimucosum UMB0043 [PKHR]
604779
604705
-
Val
CAC
[ENA]
¡û
>C151073120
CP010827
Actinomycetota
Corynebacterium singulare IBS B52218 [CP010827]
1645890
1645962
+
Val
CAC
[Ensembl]
¡û
>W1510562587
CTEG01000058
Actinomycetota
Corynebacterium striatum BM4687 [CTEG]
38990
38916
-
Val
CAC
[ENA]
¡û
>W1511365553
JSEF01000015
Actinomycetota
Corynebacterium minutissimum ATCC 23348 [JSEF]
849
923
+
Val
CAC
[ENA]
¡û
>W1511438049
JULV01000014
Actinomycetota
Corynebacterium striatum 963_CAUR [JULV]
31506
31432
-
Val
CAC
[ENA]
¡û
>W1511438101
JULW01000039
Actinomycetota
Corynebacterium striatum 962_CAUR [JULW]
342
416
+
Val
CAC
[ENA]
¡û
>W1511443065
JUSN01000044
Actinomycetota
Corynebacterium striatum 797_CAUR [JUSN]
129508
129434
-
Val
CAC
[ENA]
¡û
>W1511449464
JVBA01000162
Actinomycetota
Corynebacterium striatum 587_CAUR [JVBA]
42713
42639
-
Val
CAC
[ENA]
¡û
>W1511451254
JVCW01000020
Actinomycetota
Corynebacterium striatum 542_CAUR [JVCW]
78873
78799
-
Val
CAC
[ENA]
¡û
>W1511467922
JVTN01000040
Actinomycetota
Corynebacterium striatum 1327_CAUR [JVTN]
582
656
+
Val
CAC
[ENA]
¡û
>W1511585519
LAYQ01000013
Actinomycetota
Corynebacterium minutissimum 1941 [LAYQ]
29973
30047
+
Val
CAC
[ENA]
¡û
>W1511585557
LAYR01000002
Actinomycetota
Corynebacterium striatum 1961 [LAYR]
361362
361288
-
Val
CAC
[ENA]
¡û
>C161074796
CP014634
Actinomycetota
Corynebacterium simulans PES1 [CP014634]
2643567
2643493
-
Val
CAC
[Ensembl]
¡û
>C161074873
CP014635
Actinomycetota
Corynebacterium simulans Wattiau [CP014635]
58282
58208
-
Val
CAC
-
¡û
>W1610507486
FLTI01000038
Actinomycetota
Corynebacterium phoceense MC1 [FLTI]
78806
78880
+
Val
CAC
[ENA]
¡û
>W1610907207
LSCZ01000052
Actinomycetota
Corynebacterium sp. DNF00584 [LSCZ]
25822
25748
-
Val
CAC
[ENA]
¡û
>W1610919426
LSRB01000083
Actinomycetota
Corynebacterium sp. CMW7794 [LSRB]
128582
128656
+
Val
CAC
[ENA]
¡û
>W1610926432
LTEB01000028
Actinomycetota
Corynebacterium simulans [LTEB]
102816
102890
+
Val
CAC
[ENA]
¡û
>W1710499704
FLTI01000038
Actinomycetota
Corynebacterium phoceense MC1 [FLTI]
78806
78880
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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