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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.340087 (27 seq.)
>W131181270
ARNT01000029
Bacteroidota
Empedobacter brevis NBRC 14943 = ATCC 43319 [ARNT]
287392
287320
-
Glu
TTC
[ENA]
¡û
>WENV181377884
OFRA01041597
[OFRA] wastewater metagenome; Lake Maggiore Verbania
647
719
+
Glu
TTC
[ENA]
¢þ
>WENV170250251
CEQS01074058
[CEQS] marine metagenome genome assembly TARA_072_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
6633
6707
+
Glu
TTC
[ENA]
¢þ
>WENV170824609
MDSY01078974
[MDSY] marine metagenome; seawater
52699
52627
-
Glu
TTC
[ENA]
¢þ
>WENV170824943
MDSY01084899
[MDSY] marine metagenome; seawater
20
92
+
Glu
TTC
[ENA]
¢þ
>C191134791
CP035107
Bacteroidota
Ornithobacterium rhinotracheale FARPER-174b [CP035107]
554796
554724
-
Glu
TTC
-
¡û
>C191134792
CP035107
Bacteroidota
Ornithobacterium rhinotracheale FARPER-174b [CP035107]
554409
554337
-
Glu
TTC
-
¡û
>W1810173760
PJNI01000007
Bacteroidota
Brumimicrobium salinarum LHR20 [PJNI]
213769
213697
-
Glu
TTC
[ENA]
¡û
>W1810173761
PJNI01000007
Bacteroidota
Brumimicrobium salinarum LHR20 [PJNI]
213647
213575
-
Glu
TTC
[ENA]
¡û
>W1810173762
PJNI01000007
Bacteroidota
Brumimicrobium salinarum LHR20 [PJNI]
213525
213453
-
Glu
TTC
[ENA]
¡û
>W1810363938
PVSS01000007
Bacteroidota
Brumimicrobium mesophilum JCM 14063 [PVSS]
17783
17711
-
Glu
TTC
[ENA]
¡û
>W1810363939
PVSS01000007
Bacteroidota
Brumimicrobium mesophilum JCM 14063 [PVSS]
17655
17583
-
Glu
TTC
[ENA]
¡û
>W1810588142
QFRJ01000003
Bacteroidota
Brumimicrobium oceani C305 [QFRJ]
141135
141207
+
Glu
TTC
[ENA]
¡û
>W1810588143
QFRJ01000003
Bacteroidota
Brumimicrobium oceani C305 [QFRJ]
141265
141337
+
Glu
TTC
[ENA]
¡û
>W1810888680
QURB01000003
Bacteroidota
Brumimicrobium aurantiacum N62 [QURB]
380462
380390
-
Glu
TTC
[ENA]
¡û
>W1810888681
QURB01000003
Bacteroidota
Brumimicrobium aurantiacum N62 [QURB]
380319
380247
-
Glu
TTC
[ENA]
¡û
>C151013052
CP006828
Bacteroidota
Ornithobacterium rhinotracheale ORT-UMN 88 [CP006828]
1795945
1795871
-
Glu
TTC
[Ensembl]
¡û
>C151013053
CP006828
Bacteroidota
Ornithobacterium rhinotracheale ORT-UMN 88 [CP006828]
1795557
1795483
-
Glu
TTC
[Ensembl]
¡û
>W1511391173
JSYQ01000013
Bacteroidota
Empedobacter falsenii 282 [JSYQ]
83814
83886
+
Glu
TTC
[ENA]
¡û
>C121010279
CP003283
Bacteroidota
Ornithobacterium rhinotracheale DSM 15997 [CP003283]
1844241
1844167
-
Glu
TTC
[Ensembl]
¡û
>C121010280
CP003283
Bacteroidota
Ornithobacterium rhinotracheale DSM 15997 [CP003283]
1843853
1843779
-
Glu
TTC
[Ensembl]
¡û
>W1610029752
AXDE01000007
Bacteroidota
Ornithobacterium rhinotracheale H06-030791 [AXDE]
175038
174964
-
Glu
TTC
[ENA]
¡û
>W1610029753
AXDE01000007
Bacteroidota
Ornithobacterium rhinotracheale H06-030791 [AXDE]
174650
174576
-
Glu
TTC
[ENA]
¡û
>W1710027122
AXDE01000007
Bacteroidota
Ornithobacterium rhinotracheale H06-030791 [AXDE]
175038
174964
-
Glu
TTC
[ENA]
¡û
>W1710027123
AXDE01000007
Bacteroidota
Ornithobacterium rhinotracheale H06-030791 [AXDE]
174650
174576
-
Glu
TTC
[ENA]
¡û
>W1710570220
FOUZ01000009
Bacteroidota
Algoriella xinjiangensis [FOUZ]
140982
141054
+
Glu
TTC
[ENA]
¡û
>W1710590800
FRBH01000008
Bacteroidota
Chishuiella changwenlii [FRBH]
161957
161885
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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