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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.340095 (96 seq.)
>W1710804095
LJYY01000079
Bacillota
Lysinibacillus sphaericus [LJYY]
222210
222136
-
Arg
CCG
[ENA]
¡û
>W1710811103
LKIE01000063
Bacillota
Lysinibacillus sp. F5 [LKIE]
29976
30050
+
Arg
CCG
[ENA]
¡û
>W1710819566
LKPY01000002
Bacillota
Lysinibacillus sp. ZYM-1 [LKPY]
30921
30847
-
Arg
CCG
[ENA]
¡û
>W1710859250
LMBZ01000014
Bacillota
Solibacillus cecembensis [LMBZ]
110428
110502
+
Arg
CCG
[ENA]
¡û
>W1711179077
LWHI01000001
Bacillota
Lysinibacillus sphaericus [LWHI]
3107144
3107070
-
Arg
CCG
[ENA]
¡û
>W1711352877
MDDN01000012
Bacillota
Lysinibacillus xylanilyticus [MDDN]
10970
10896
-
Arg
CCG
[ENA]
¡û
>W1711356923
MDGU01000009
Bacillota
Lysinibacillus sp. AR18-8 [MDGU]
75284
75358
+
Arg
CCG
[ENA]
¡û
>W1711383709
MECQ01000006
Bacillota
Lysinibacillus fusiformis [MECQ]
38020
38094
+
Arg
CCG
[ENA]
¡û
>W131044865
AMQZ01000020
Bacillota
Lysinibacillus fusiformis ZB2 [AMQZ]
210667
210593
-
Arg
CCG
[ENA]
¡û
>W131156587
AQPX01000005
Bacillota
Lysinibacillus sphaericus OT4b.31 [AQPX]
123243
123317
+
Arg
CCG
[ENA]
¡û
>W131237664
AUOZ01000026
Bacillota
Lysinibacillus sphaericus KCTC 3346 [AUOZ]
38958
39032
+
Arg
CCG
[ENA]
¡û
>w023356
AAXV01000001
Bacillota
Bacillus sp. B14905 [AAXV]
25989
25913
-
Arg
CCG
[ENA]
¡û
>W08003025
ABFU01000060
Bacillota
Bacillus coahuilensis m4-4 [ABFU]
171977
172052
+
Arg
CCG
[ENA]
¡û
>W141186599
AYKQ01000059
Bacillota
Lysinibacillus sphaericus CBAM5 [AYKQ]
107878
107952
+
Arg
CCG
[ENA]
¡û
>W141187888
AYMK01000024
Bacillota
Lysinibacillus fusiformis H1k [AYMK]
37809
37883
+
Arg
CCG
[ENA]
¡û
>C08006239
CP000817
Bacillota
Lysinibacillus sphaericus C3-41 [CP000817]
471455
471529
+
Arg
CCG
[Ensembl]
¡û
>WENV170669727
LAHS01001796
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
62327
62401
+
Arg
CCG
[ENA]
¢þ
>WENV170965592
MTEU01004320
[MTEU] soil metagenome; naturally attenuated soil
3741
3667
-
Arg
CCG
[ENA]
¢þ
>WENV170965906
MTEV01009226
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
288
214
-
Arg
CCG
[ENA]
¢þ
>WENV170966487
MTEX01011667
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
2378
2452
+
Arg
CCG
[ENA]
¢þ
>C181041969
CP019980
Bacillota
Lysinibacillus sphaericus DSM 28 [CP019980]
882919
882993
+
Arg
CCG
-
¡û
>C181125153
CP026007
Bacillota
Lysinibacillus sp. YS11 [CP026007]
3758517
3758443
-
Arg
CCG
-
¡û
>C181147715
CP027224
Bacillota
Lysinibacillus sp. B2A1 [CP027224]
4552976
4552902
-
Arg
CCG
-
¡û
>C191001322
AP018335
Bacillota
Ureibacillus thermosphaericus A1 [AP018335]
3102283
3102211
-
Arg
CCG
-
¡û
>C191040646
CP026120
Bacillota
Lysinibacillus sphaericus KCCM 35418 [CP026120]
2740164
2740090
-
Arg
CCG
-
¡û
>W141704210
JMMU01000034
Bacillota
Lysinibacillus sphaericus [JMMU]
46924
46850
-
Arg
CCG
[ENA]
¡û
>W141800932
JPDJ01000156
Bacillota
Lysinibacillus sphaericus [JPDJ]
37597
37671
+
Arg
CCG
[ENA]
¡û
>W141800957
JPDK01000109
Bacillota
Lysinibacillus sphaericus [JPDK]
30034
29960
-
Arg
CCG
[ENA]
¡û
>W141800973
JPDL01000036
Bacillota
Lysinibacillus sphaericus [JPDL]
36911
36985
+
Arg
CCG
[ENA]
¡û
>W141801008
JPDM01000262
Bacillota
Lysinibacillus sphaericus [JPDM]
8518
8444
-
Arg
CCG
[ENA]
¡û
>W141801566
JPEF01000001
Bacillota
Lysinibacillus fusiformis [JPEF]
602638
602564
-
Arg
CCG
[ENA]
¡û
>W141810316
JPUW01000039
Bacillota
Lysinibacillus sp. BF-4 [JPUW]
773
846
+
Arg
CCG
[ENA]
¡û
>W141822568
JRBA01000004
Bacillota
Lysinibacillus fusiformis [JRBA]
170528
170454
-
Arg
CCG
[ENA]
¡û
>W1910183410
BJNS01000034
Bacillota
Lysinibacillus sphaericus NBRC 15095 [BJNS]
26939
26865
-
Arg
CCG
[ENA]
¡û
>W1910184274
BJOM01000006
Bacillota
Lysinibacillus fusiformis NBRC 15717 [BJOM]
37520
37594
+
Arg
CCG
[ENA]
¡û
>W1910827413
MWSJ01000032
Bacillota
Lysinibacillus sp. KCTC 33748 [MWSJ]
6615
6541
-
Arg
CCG
[ENA]
¡û
>W1911285058
NTMQ01000004
Bacillota
Lysinibacillus fusiformis GM [NTMQ]
107570
107644
+
Arg
CCG
[ENA]
¡û
>W1911495534
OBQC01000007
Bacillota
Ureibacillus acetophenoni JC23 [OBQC]
103316
103390
+
Arg
CCG
[ENA]
¡û
>W1911535233
OLMT01000009
Bacillota
Lysinibacillus timonensis Marseille-P5727 [OLMT]
875254
875180
-
Arg
CCG
[ENA]
¡û
>W1810054412
PDFK01000002
Bacillota
Lysinibacillus fusiformis Juneja [PDFK]
848161
848087
-
Arg
CCG
[ENA]
¡û
>W1810078599
PEKE01000015
Bacillota
Lysinibacillus sphaericus KU skv2 1 [PEKE]
118485
118411
-
Arg
CCG
[ENA]
¡û
>W1810100683
PGLV01000002
Bacillota
Lysinibacillus sphaericus A1 [PGLV]
122173
122247
+
Arg
CCG
[ENA]
¡û
>W1810118827
PHQY01000732
Bacillota
Lysinibacillus xylanilyticus t26 [PHQY]
30962
30888
-
Arg
CCG
[ENA]
¡û
>W1810389692
PXXX01000003
Bacillota
Lysinibacillus capsici PB300 [PXXX]
39309
39383
+
Arg
CCG
[ENA]
¡û
>W1810389810
PXXY01000041
Bacillota
Lysinibacillus fusiformis NRRL NRS-350 [PXXY]
37512
37586
+
Arg
CCG
[ENA]
¡û
>W1810424037
PYUE01000008
Bacillota
Lysinibacillus tabacifolii K3514 [PYUE]
190326
190252
-
Arg
CCG
[ENA]
¡û
>W1810426513
PYWG01000007
Bacillota
Lysinibacillus parviboronicapiens VT1065 [PYWG]
154152
154078
-
Arg
CCG
[ENA]
¡û
>W1810426571
PYWH01000004
Bacillota
Lysinibacillus parviboronicapiens VT1066 [PYWH]
107809
107883
+
Arg
CCG
[ENA]
¡û
>W1810426665
PYWI01000019
Bacillota
Lysinibacillus parviboronicapiens BAM-582 [PYWI]
56429
56355
-
Arg
CCG
[ENA]
¡û
>W1810426934
PYWL01000007
Bacillota
Lysinibacillus fusiformis ATCC 7055 [PYWL]
37624
37698
+
Arg
CCG
[ENA]
¡û
>W1810426984
PYWM01000010
Bacillota
Lysinibacillus mangiferihumi M-GX18 [PYWM]
96280
96354
+
Arg
CCG
[ENA]
¡û
>W1810471035
QAFW01000004
Bacillota
Metalysinibacillus jejuensis N25 [QAFW]
17114
17041
-
Arg
CCG
[ENA]
¡û
>C151013170
CP006837
Bacillota
Lysinibacillus varians GY32 [CP006837]
3816505
3816431
-
Arg
CCG
[Ensembl]
¡û
>C151073023
CP010820
Bacillota
Lysinibacillus fusiformis RB-21 [CP010820]
930472
930546
+
Arg
CCG
[Ensembl]
¡û
>W10115337
ADJR01000025
Bacillota
Lysinibacillus fusiformis ZC1 [ADJR]
21128
21202
+
Arg
CCG
[ENA]
¡û
>W1511315993
JPVN01000003
Bacillota
Ureibacillus manganicus DSM 26584 [JPVN]
130945
131019
+
Arg
CCG
[ENA]
¡û
>W1511316253
JPVR01000077
Bacillota
Lysinibacillus boronitolerans JCM 21713 = 10a = NBRC 103108 [JPVR]
200892
200818
-
Arg
CCG
[ENA]
¡û
>W11118923
ADJR01000025
Bacillota
Lysinibacillus fusiformis ZC1 [ADJR]
21128
21202
+
Arg
CCG
[ENA]
¡û
>W1511392254
JSZM01000015
Bacillota
Lysinibacillus sp. A1 [JSZM]
37485
37559
+
Arg
CCG
[ENA]
¡û
>W1511509937
JXRP01000009
Bacillota
Jeotgalibacillus soli Cunha et al. 2012 P9 [JXRP]
826522
826595
+
Arg
CCG
[ENA]
¡û
>W1511640619
LDUJ01000004
Bacillota
Lysinibacillus sp. LK3 [LDUJ]
37869
37943
+
Arg
CCG
[ENA]
¡û
>W1511689860
LFXJ01000013
Bacillota
Lysinibacillus xylanilyticus DSM 23493 [LFXJ]
117970
118044
+
Arg
CCG
[ENA]
¡û
>W1511694880
LGCI01000006
Bacillota
Lysinibacillus macroides DSM 54 [LGCI]
180032
179958
-
Arg
CCG
[ENA]
¡û
>W1511705607
LGRV01000001
Bacillota
Lysinibacillus contaminans DSM 25560 [LGRV]
275630
275704
+
Arg
CCG
[ENA]
¡û
>C161074947
CP014643
Bacillota
Lysinibacillus sphaericus OT4b.25 [CP014643]
1486289
1486363
+
Arg
CCG
-
¡û
>C161078455
CP014856
Bacillota
Lysinibacillus sphaericus [CP014856]
4562756
4562682
-
Arg
CCG
-
¡û
>C161084724
CP015224
Bacillota
Lysinibacillus sphaericus 2362 [CP015224]
3011302
3011228
-
Arg
CCG
-
¡û
>W121062255
AJIK01000017
Bacillota
Ureibacillus thermosphaericus str. Thermo-BF [AJIK]
22384
22310
-
Arg
CCG
[ENA]
¡û
>W1610045484
BBBP01000013
Bacillota
Lysinibacillus parviboronicapiens JCM 18861 [BBBP]
41665
41739
+
Arg
CCG
[ENA]
¡û
>W1610047510
BBDJ01000003
Bacillota
Lysinibacillus pakistanensis [BBDJ]
14170
14244
+
Arg
CCG
[ENA]
¡û
>W121070951
AJXM01000132
Bacillota
Lysinibacillus boronitolerans F1182 [AJXM]
8276
8202
-
Arg
CCG
[ENA]
¡û
>W1610594769
LDYF01000045
Bacillota
Bacillus coahuilensis m2-6 [LDYF]
48297
48222
-
Arg
CCG
[ENA]
¡û
>W1610594851
LDYG01000042
Bacillota
Bacillus coahuilensis p1.1.43 [LDYG]
62738
62663
-
Arg
CCG
[ENA]
¡û
>W1610667952
LJYY01000079
Bacillota
Lysinibacillus sphaericus [LJYY]
222210
222136
-
Arg
CCG
[ENA]
¡û
>W1610675158
LKIE01000063
Bacillota
Lysinibacillus sp. F5 [LKIE]
29976
30050
+
Arg
CCG
[ENA]
¡û
>W1610683528
LKPY01000002
Bacillota
Lysinibacillus sp. ZYM-1 [LKPY]
30921
30847
-
Arg
CCG
[ENA]
¡û
>W1610721596
LMBZ01000014
Bacillota
Solibacillus cecembensis [LMBZ]
110428
110502
+
Arg
CCG
[ENA]
¡û
>W1610987029
LWHI01000001
Bacillota
Lysinibacillus sphaericus [LWHI]
3107144
3107070
-
Arg
CCG
[ENA]
¡û
>W1710022818
AVCW01000005
Bacillota
Lysinibacillus boronitolerans JCM 21713 = 10a = NBRC 103108 [AVCW]
200892
200818
-
Arg
CCG
[ENA]
¡û
>W1710022970
AVDA01000003
Bacillota
Ureibacillus manganicus DSM 26584 [AVDA]
130945
131019
+
Arg
CCG
[ENA]
¡û
>W1710042325
BBBP01000013
Bacillota
Lysinibacillus parviboronicapiens JCM 18861 [BBBP]
41665
41739
+
Arg
CCG
[ENA]
¡û
>W1710044115
BBDJ01000003
Bacillota
Lysinibacillus pakistanensis [BBDJ]
14170
14244
+
Arg
CCG
[ENA]
¡û
>W1710506021
FMUG01000017
Bacillota
Lysinibacillus fusiformis SG8 [FMUG]
37555
37629
+
Arg
CCG
[ENA]
¡û
>W1710506451
FMUO01000012
Bacillota
Lysinibacillus sp. SG9 [FMUO]
63609
63535
-
Arg
CCG
[ENA]
¡û
>W1710507866
FMVP01000008
Bacillota
Lysinibacillus fusiformis LD79 [FMVP]
37449
37523
+
Arg
CCG
[ENA]
¡û
>W1710510191
FMXU01000010
Bacillota
Lysinibacillus sp. TC-37 [FMXU]
63652
63578
-
Arg
CCG
[ENA]
¡û
>W1710510684
FMYD01000013
Bacillota
Lysinibacillus fusiformis BC-14 [FMYD]
88208
88134
-
Arg
CCG
[ENA]
¡û
>W1710547104
FOCR01000007
Bacillota
Lysinibacillus fusiformis SG45 [FOCR]
188152
188078
-
Arg
CCG
[ENA]
¡û
>W1710549337
FOEL01000008
Bacillota
Lysinibacillus fusiformis TC-13 [FOEL]
197850
197776
-
Arg
CCG
[ENA]
¡û
>W1710564674
FOQQ01000013
Bacillota
Lysinibacillus fusiformis SG53 [FOQQ]
88208
88134
-
Arg
CCG
[ENA]
¡û
>W1710575966
FOZQ01000012
Bacillota
Lysinibacillus sp. SG55 [FOZQ]
63646
63572
-
Arg
CCG
[ENA]
¡û
>W1710576064
FOZT01000019
Bacillota
Lysinibacillus fusiformis BC-43 [FOZT]
88208
88134
-
Arg
CCG
[ENA]
¡û
>W1710603253
FUYW01000032
Bacillota
Lysinibacillus sp. AC-3 [FUYW]
6615
6541
-
Arg
CCG
[ENA]
¡û
>W1710625272
JOTQ01000064
Bacillota
Lysinibacillus sphaericus [JOTQ]
69255
69181
-
Arg
CCG
[ENA]
¡û
>W1710714221
LDYF01000045
Bacillota
Bacillus coahuilensis m2-6 [LDYF]
48297
48222
-
Arg
CCG
[ENA]
¡û
>W1710714303
LDYG01000042
Bacillota
Bacillus coahuilensis p1.1.43 [LDYG]
62738
62663
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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