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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.340144 (30 seq.)
>W1710923815
LOCK01000040
Bacillota
Desulfitobacterium hafniense [LOCK]
3851
3925
+
Gly
CCC
[ENA]
¡û
>W1711434395
MIMZ01000004
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
159705
159779
+
Gly
CCC
[ENA]
¡û
>C171101781
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
2239474
2239548
+
Gly
CCC
-
¡û
>W131162723
AQZD01000011
Bacillota
Desulfitobacterium hafniense TCP-A [AQZD]
10641
10567
-
Gly
CCC
[ENA]
¡û
>W131164682
ARAZ01000016
Bacillota
Desulfitobacterium hafniense PCP-1 [ARAZ]
10621
10547
-
Gly
CCC
[ENA]
¡û
>C007802
AP008230
Bacillota
Desulfitobacterium hafniense Y51 [AP008230]
1727991
1728065
+
Gly
CCC
[Ensembl]
¡û
>WENV180176882
OAWD01002749
[OAWD] human gut metagenome; faeces
2865
2939
+
Gly
CCC
[ENA]
¢þ
>w002209
AAAW04000006
Bacillota
Desulfitobacterium hafniense DCB-2 [AAAW]
64081
64010
-
Gly
CCC
[ENA]
¡û
>WENV180498781
OCAG01001856
[OCAG] human gut metagenome; faeces
1127
1201
+
Gly
CCC
[ENA]
¢þ
>WENV180504504
OCAN01004417
[OCAN] human gut metagenome; faeces
1012
1086
+
Gly
CCC
[ENA]
¢þ
>WENV181346450
OFML01019269
[OFML] human gut metagenome; human gut
595
669
+
Gly
CCC
[ENA]
¢þ
>W141150094
AXAC01000033
Bacillota
Acetobacterium dehalogenans DSM 11527 [AXAC]
54711
54637
-
Gly
CCC
[ENA]
¡û
>WENV182403366
OIET01003389
[OIET] human gut metagenome; human gut
1054
1128
+
Gly
CCC
[ENA]
¢þ
>WENV183665321
ORJL010457255
[ORJL] groundwater metagenome; groundwater
11049
11123
+
Gly
CCC
[ENA]
¢þ
>C191064400
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
8235
8309
+
Gly
CCC
-
¡û
>C191219539
LR215983
Bacillota
Eubacterium limosum [LR215983]
2478612
2478538
-
Gly
CCC
-
¡û
>C09104013
CP001336
Bacillota
Desulfitobacterium hafniense DCB-2 [CP001336]
2805820
2805894
+
Gly
CCC
[Ensembl]
¡û
>W1810609746
QGUD01000002
Bacillota
Eubacterium limosum 8486cho [QGUD]
2698
2624
-
Gly
CCC
[ENA]
¡û
>W1810871721
QUDF01000004
Bacillota
Eubacterium sp. AM05-23 [QUDF]
57517
57591
+
Gly
CCC
[ENA]
¡û
>C151016356
CP007032
Bacillota
Desulfitobacterium metallireducens DSM 15288 853-15A [CP007032]
2170758
2170684
-
Gly
CCC
[Ensembl]
¡û
>C11120635
CP002547
Bacillota
Syntrophobotulus glycolicus DSM 8271 [CP002547]
3366996
3366922
-
Gly
CCC
[Ensembl]
¡û
>W1511480169
JWIS01000010
Bacillota
Eubacterium limosum ATCC 8480 [JWIS]
14694
14620
-
Gly
CCC
[ENA]
¡û
>W11181423
AGJB01000028
Bacillota
Desulfitobacterium metallireducens DSM 15288 [AGJB]
1158
1232
+
Gly
CCC
[ENA]
¡û
>C161037829
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
2770967
2770893
-
Gly
CCC
[Ensembl]
¡û
>W121007275
AFZX01000060
Bacillota
Desulfitobacterium hafniense DP7 [AFZX]
10400
10326
-
Gly
CCC
[ENA]
¡û
>W1610781416
LOCK01000040
Bacillota
Desulfitobacterium hafniense [LOCK]
3851
3925
+
Gly
CCC
[ENA]
¡û
>W1710525047
FNJF01000027
Bacillota
Eubacterium maltosivorans limosum [FNJF]
1079
1153
+
Gly
CCC
[ENA]
¡û
>W1710571996
FOWI01000009
Bacillota
Eubacterium callanderi [FOWI]
198062
198136
+
Gly
CCC
[ENA]
¡û
>W1710591278
FRBP01000002
Bacillota
Eubacterium callanderi [FRBP]
172232
172158
-
Gly
CCC
[ENA]
¡û
>W1710593555
FRDN01000021
Bacillota
Desulfitobacterium chlororespirans DSM 11544 [FRDN]
76292
76218
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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