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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.340146 (21 seq.)
>W1711434397
MIMZ01000006
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
514399
514325
-
Gln
CTG
[ENA]
¡û
>C171101819
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
354163
354089
-
Gln
CTG
-
¡û
>WENV180176704
OAWD01000676
[OAWD] human gut metagenome; faeces
3485
3559
+
Gln
CTG
[ENA]
¢þ
>WENV180498392
OCAG01000114
[OCAG] human gut metagenome; faeces
70184
70110
-
Gln
CTG
[ENA]
¢þ
>WENV180504553
OCAN01006923
[OCAN] human gut metagenome; faeces
812
738
-
Gln
CTG
[ENA]
¢þ
>WENV180508307
OCAT01080273
[OCAT] human gut metagenome; faeces
189
115
-
Gln
CTG
[ENA]
¢þ
>WENV181346301
OFML01010398
[OFML] human gut metagenome; human gut
1571
1645
+
Gln
CTG
[ENA]
¢þ
>WENV182403068
OIET01000648
[OIET] human gut metagenome; human gut
21094
21020
-
Gln
CTG
[ENA]
¢þ
>WENV182405119
OIEV01000827
[OIEV] human gut metagenome; human gut
5522
5596
+
Gln
CTG
[ENA]
¢þ
>WENV182836569
OKFX01007845
[OKFX] human gut metagenome; human gut
650
576
-
Gln
CTG
[ENA]
¢þ
>WENV182861684
OKPF01006373
[OKPF] human gut metagenome; human gut
196
122
-
Gln
CTG
[ENA]
¢þ
>C191064405
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
3176137
3176211
+
Gln
CTG
-
¡û
>C191219519
LR215983
Bacillota
Eubacterium limosum [LR215983]
4503343
4503417
+
Gln
CTG
-
¡û
>W1810609727
QGUD01000001
Bacillota
Eubacterium limosum 8486cho [QGUD]
628775
628701
-
Gln
CTG
[ENA]
¡û
>W1810871747
QUDF01000019
Bacillota
Eubacterium sp. AM05-23 [QUDF]
53028
52954
-
Gln
CTG
[ENA]
¡û
>C11108798
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
429788
429862
+
Gln
CTG
[Ensembl]
¡û
>W1511480144
JWIS01000002
Bacillota
Eubacterium limosum ATCC 8480 [JWIS]
343628
343554
-
Gln
CTG
[ENA]
¡û
>C161037792
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
3786268
3786194
-
Gln
CTG
[Ensembl]
¡û
>W1710525057
FNJF01000036
Bacillota
Eubacterium maltosivorans limosum [FNJF]
13275
13201
-
Gln
CTG
[ENA]
¡û
>W1710571949
FOWI01000001
Bacillota
Eubacterium callanderi [FOWI]
174247
174321
+
Gln
CTG
[ENA]
¡û
>W1710591289
FRBP01000005
Bacillota
Eubacterium callanderi [FRBP]
31211
31285
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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