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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.340193 (113 seq.)
>W1710853374
LLWP01000003
Bacteroidota
Pedobacter sp. Hv1 [LLWP]
52010
51936
-
Glu
TTC
[ENA]
¡û
>W1710870411
LMKM01000012
Bacteroidota
Pedobacter sp. Leaf216 [LMKM]
422547
422621
+
Glu
TTC
[ENA]
¡û
>W1710870413
LMKM01000012
Bacteroidota
Pedobacter sp. Leaf216 [LMKM]
422853
422927
+
Glu
TTC
[ENA]
¡û
>W1710871254
LMLE01000001
Bacteroidota
Pedobacter sp. Leaf41 [LMLE]
334139
334067
-
Glu
TTC
[ENA]
¡û
>W1710871256
LMLE01000001
Bacteroidota
Pedobacter sp. Leaf41 [LMLE]
333681
333609
-
Glu
TTC
[ENA]
¡û
>W1710876327
LMPD01000001
Bacteroidota
Pedobacter sp. Leaf176 [LMPD]
579374
579300
-
Glu
TTC
[ENA]
¡û
>W1710876329
LMPD01000001
Bacteroidota
Pedobacter sp. Leaf176 [LMPD]
579075
579003
-
Glu
TTC
[ENA]
¡û
>W1710877049
LMPU01000001
Bacteroidota
Pedobacter sp. Leaf194 [LMPU]
622813
622739
-
Glu
TTC
[ENA]
¡û
>W1710877051
LMPU01000001
Bacteroidota
Pedobacter sp. Leaf194 [LMPU]
622526
622452
-
Glu
TTC
[ENA]
¡û
>W1710888299
LMZQ01000003
Bacteroidota
Pedobacter ginsenosidimutans [LMZQ]
441517
441591
+
Glu
TTC
[ENA]
¡û
>W1710888301
LMZQ01000003
Bacteroidota
Pedobacter ginsenosidimutans [LMZQ]
443695
443769
+
Glu
TTC
[ENA]
¡û
>W1712082037
NHOT01000001
Bacteroidota
Pedobacter sp. AJM [NHOT]
412609
412681
+
Glu
TTC
[ENA]
¡û
>W1712082039
NHOT01000001
Bacteroidota
Pedobacter sp. AJM [NHOT]
418857
418931
+
Glu
TTC
[ENA]
¡û
>C171057615
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
1775935
1776007
+
Glu
TTC
-
¡û
>C171057617
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
1776170
1776242
+
Glu
TTC
-
¡û
>C171057619
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
1776405
1776479
+
Glu
TTC
-
¡û
>C171117342
CP021237
Bacteroidota
Sphingobacteriaceae bacterium GW460-11-11-14-LB5 [CP021237]
5721044
5720970
-
Glu
TTC
-
¡û
>C171117344
CP021237
Bacteroidota
Sphingobacteriaceae bacterium GW460-11-11-14-LB5 [CP021237]
5720663
5720589
-
Glu
TTC
-
¡û
>W131145930
AQGK01000003
Bacteroidota
Pedobacter heparinus DSM 2366 [AQGK]
225658
225586
-
Glu
TTC
[ENA]
¡û
>W131229757
AUHA01000002
Bacteroidota
Daejeonella oryzae DSM 19973 [AUHA]
322753
322679
-
Glu
TTC
[ENA]
¡û
>w027788
ABCM01000005
Bacteroidota
Pedobacter sp. BAL39 [ABCM]
92677
92601
-
Glu
TTC
[ENA]
¡û
>w027786
ABCM01000005
Bacteroidota
Pedobacter sp. BAL39 [ABCM]
92907
92831
-
Glu
TTC
[ENA]
¡û
>W141142847
AWRU01000003
Bacteroidota
Pedobacter sp. V48 [AWRU]
44415
44489
+
Glu
TTC
[ENA]
¡û
>W141187619
AYMG01000036
Bacteroidota
Pedobacter jeongneungensis H1ai [AYMG]
8663
8589
-
Glu
TTC
[ENA]
¡û
>W141187621
AYMG01000037
Bacteroidota
Pedobacter jeongneungensis H1ai [AYMG]
6272
6346
+
Glu
TTC
[ENA]
¡û
>W141292010
JAUG01000007
Bacteroidota
Pedobacter borealis DSM 19626 [JAUG]
71054
71128
+
Glu
TTC
[ENA]
¡û
>W141292039
JAUG01000095
Bacteroidota
Pedobacter borealis DSM 19626 [JAUG]
6090
6162
+
Glu
TTC
[ENA]
¡û
>W141350118
JCKI01000008
Bacteroidota
Pedobacter sp. R20-19 [JCKI]
132990
133062
+
Glu
TTC
[ENA]
¡û
>W141350120
JCKI01000008
Bacteroidota
Pedobacter sp. R20-19 [JCKI]
133862
133936
+
Glu
TTC
[ENA]
¡û
>WENV183741694
PJUG01001360
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
2138
2066
-
Glu
TTC
[ENA]
¢þ
>WENV183742528
PJUI01000007
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
808212
808284
+
Glu
TTC
[ENA]
¢þ
>WENV183743612
PJUJ01010278
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
882
954
+
Glu
TTC
[ENA]
¢þ
>WENV183745348
PJUL01032382
[PJUL] feces metagenome; Chicken feces enriched on filter paper
85
157
+
Glu
TTC
[ENA]
¢þ
>WENV170012086
APMI01118754
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
726
800
+
Glu
TTC
[ENA]
¢þ
>WENV170012087
APMI01118754
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
881
953
+
Glu
TTC
[ENA]
¢þ
>WENV170990149
MWVZ01238954
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
111
183
+
Glu
TTC
[ENA]
¢þ
>WENV170990195
MWVZ01258357
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
352
280
-
Glu
TTC
[ENA]
¢þ
>WENV171003248
NNBT01002847
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
306
380
+
Glu
TTC
[ENA]
¢þ
>WENV171003274
NNBT01003352
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
1652
1578
-
Glu
TTC
[ENA]
¢þ
>C181094367
CP024091
Bacteroidota
Pedobacter ginsengisoli T01R-27 [CP024091]
3904798
3904726
-
Glu
TTC
-
¡û
>C181094369
CP024091
Bacteroidota
Pedobacter ginsengisoli T01R-27 [CP024091]
3904519
3904447
-
Glu
TTC
-
¡û
>C191226428
LS999839
Bacteroidota
Pedobacter schmidteae eg [LS999839]
1797771
1797843
+
Glu
TTC
-
¡û
>W09109621
ABUJ01000069
Bacteroidota
Pedobacter heparinus DSM 2366 [ABUJ]
39
111
+
Glu
TTC
[ENA]
¡û
>W141727624
JNFF01000031
Bacteroidota
Pedobacter antarcticus 4BY [JNFF]
108
180
+
Glu
TTC
[ENA]
¡û
>C09108556
CP001681
Bacteroidota
Pedobacter heparinus DSM 2366 [CP001681]
4529831
4529759
-
Glu
TTC
[Ensembl]
¡û
>W1911496568
OCMT01000003
Bacteroidota
Pedobacter xixiisoli CGMCC 1.12803 [OCMT]
227423
227351
-
Glu
TTC
[ENA]
¡û
>W1911496569
OCMT01000003
Bacteroidota
Pedobacter xixiisoli CGMCC 1.12803 [OCMT]
101021
100949
-
Glu
TTC
[ENA]
¡û
>W1911647411
QAJL01000004
Bacteroidota
Pedobacter sp. KBW06 [QAJL]
221727
221655
-
Glu
TTC
[ENA]
¡û
>W1911647413
QAJL01000004
Bacteroidota
Pedobacter sp. KBW06 [QAJL]
221493
221421
-
Glu
TTC
[ENA]
¡û
>W1911647629
QAJQ01000002
Bacteroidota
Pedobacter sp. KBW01 [QAJQ]
107799
107871
+
Glu
TTC
[ENA]
¡û
>W1911647631
QAJQ01000002
Bacteroidota
Pedobacter sp. KBW01 [QAJQ]
118604
118676
+
Glu
TTC
[ENA]
¡û
>W1810474630
QAIL01000095
Bacteroidota
Pedobacter sp. HMWF019 [QAIL]
19601
19529
-
Glu
TTC
[ENA]
¡û
>W1810503848
QBKL01000011
Bacteroidota
Pedobacter sp. OK291 [QBKL]
589731
589659
-
Glu
TTC
[ENA]
¡û
>W1810503850
QBKL01000011
Bacteroidota
Pedobacter sp. OK291 [QBKL]
589467
589395
-
Glu
TTC
[ENA]
¡û
>W1810503918
QBKM01000005
Bacteroidota
Pedobacter sp. YR016 [QBKM]
40384
40312
-
Glu
TTC
[ENA]
¡û
>W1810503920
QBKM01000005
Bacteroidota
Pedobacter sp. YR016 [QBKM]
40149
40077
-
Glu
TTC
[ENA]
¡û
>W1810594619
QGDC01000005
Bacteroidota
Mucilaginibacter hurinus ZR32 [QGDC]
67242
67314
+
Glu
TTC
[ENA]
¡û
>W1810594620
QGDC01000005
Bacteroidota
Mucilaginibacter hurinus ZR32 [QGDC]
78019
78091
+
Glu
TTC
[ENA]
¡û
>W1810606122
QGNY01000005
Bacteroidota
Pedobacter paludis R-8 [QGNY]
323902
323830
-
Glu
TTC
[ENA]
¡û
>W1810606157
QGNZ01000002
Bacteroidota
Pedobacter yonginense KCTC22721 [QGNZ]
288435
288507
+
Glu
TTC
[ENA]
¡û
>W1810676168
QKLU01000009
Bacteroidota
Pedobacter nutrimenti DSM 27372 [QKLU]
202132
202060
-
Glu
TTC
[ENA]
¡û
>W1810704237
QMHN01000005
Bacteroidota
Pedobacter chitinilyticus CM134L-2 [QMHN]
144097
144025
-
Glu
TTC
[ENA]
¡û
>W1810704238
QMHN01000005
Bacteroidota
Pedobacter chitinilyticus CM134L-2 [QMHN]
143947
143875
-
Glu
TTC
[ENA]
¡û
>W1810704330
QMHQ01000001
Bacteroidota
Pedobacter namyangjuensis 5G38 [QMHQ]
859074
859146
+
Glu
TTC
[ENA]
¡û
>W1810704332
QMHQ01000001
Bacteroidota
Pedobacter namyangjuensis 5G38 [QMHQ]
859379
859451
+
Glu
TTC
[ENA]
¡û
>W1810720102
QNQU01000070
Bacteroidota
Pedobacter miscanthi RS10 [QNQU]
101
173
+
Glu
TTC
[ENA]
¡û
>W1810761062
QPKV01000003
Bacteroidota
Pedobacter chinensis JDX94 [QPKV]
741410
741338
-
Glu
TTC
[ENA]
¡û
>W1810761064
QPKV01000003
Bacteroidota
Pedobacter chinensis JDX94 [QPKV]
733726
733654
-
Glu
TTC
[ENA]
¡û
>W1810885493
QUNJ01000003
Bacteroidota
Pedobacter sp. YR510 [QUNJ]
909857
909785
-
Glu
TTC
[ENA]
¡û
>W1810885495
QUNJ01000003
Bacteroidota
Pedobacter sp. YR510 [QUNJ]
909350
909278
-
Glu
TTC
[ENA]
¡û
>W1810885589
QUNL01000002
Bacteroidota
Pedobacter sp. OV280 [QUNL]
143148
143220
+
Glu
TTC
[ENA]
¡û
>W1810885591
QUNL01000002
Bacteroidota
Pedobacter sp. OV280 [QUNL]
143415
143487
+
Glu
TTC
[ENA]
¡û
>W1511390954
JSYN01000005
Bacteroidota
Pedobacter kyungheensis KACC 16221 [JSYN]
119401
119327
-
Glu
TTC
[ENA]
¡û
>W1511509448
JXRA01000187
Bacteroidota
Pedobacter lusitanus NL19 [JXRA]
1582
1510
-
Glu
TTC
[ENA]
¡û
>W1511646560
LECU01000004
Bacteroidota
Pedobacter sp. BMA [LECU]
715450
715524
+
Glu
TTC
[ENA]
¡û
>W121063669
AJLG01000085
Bacteroidota
Pedobacter agri PB92 [AJLG]
20825
20753
-
Glu
TTC
[ENA]
¡û
>W121063671
AJLG01000085
Bacteroidota
Pedobacter agri PB92 [AJLG]
20317
20243
-
Glu
TTC
[ENA]
¡û
>W1610612110
LGEL01000009
Bacteroidota
Pedobacter panaciterrae [LGEL]
6735
6807
+
Glu
TTC
[ENA]
¡û
>W1610612112
LGEL01000009
Bacteroidota
Pedobacter panaciterrae [LGEL]
6967
7039
+
Glu
TTC
[ENA]
¡û
>W1610716498
LLWP01000003
Bacteroidota
Pedobacter sp. Hv1 [LLWP]
52010
51936
-
Glu
TTC
[ENA]
¡û
>W1610732757
LMKM01000012
Bacteroidota
Pedobacter sp. Leaf216 [LMKM]
422547
422621
+
Glu
TTC
[ENA]
¡û
>W1610732759
LMKM01000012
Bacteroidota
Pedobacter sp. Leaf216 [LMKM]
422853
422927
+
Glu
TTC
[ENA]
¡û
>W1610733600
LMLE01000001
Bacteroidota
Pedobacter sp. Leaf41 [LMLE]
334139
334067
-
Glu
TTC
[ENA]
¡û
>W1610733602
LMLE01000001
Bacteroidota
Pedobacter sp. Leaf41 [LMLE]
333681
333609
-
Glu
TTC
[ENA]
¡û
>W1610738673
LMPD01000001
Bacteroidota
Pedobacter sp. Leaf176 [LMPD]
579374
579300
-
Glu
TTC
[ENA]
¡û
>W1610738675
LMPD01000001
Bacteroidota
Pedobacter sp. Leaf176 [LMPD]
579075
579003
-
Glu
TTC
[ENA]
¡û
>W1610739395
LMPU01000001
Bacteroidota
Pedobacter sp. Leaf194 [LMPU]
622813
622739
-
Glu
TTC
[ENA]
¡û
>W1610739397
LMPU01000001
Bacteroidota
Pedobacter sp. Leaf194 [LMPU]
622526
622452
-
Glu
TTC
[ENA]
¡û
>W1610748677
LMZQ01000003
Bacteroidota
Pedobacter ginsenosidimutans [LMZQ]
441517
441591
+
Glu
TTC
[ENA]
¡û
>W1610748679
LMZQ01000003
Bacteroidota
Pedobacter ginsenosidimutans [LMZQ]
443695
443769
+
Glu
TTC
[ENA]
¡û
>W1710512286
FMZH01000005
Bacteroidota
Pedobacter soli [FMZH]
206286
206360
+
Glu
TTC
[ENA]
¡û
>W1710512288
FMZH01000005
Bacteroidota
Pedobacter soli [FMZH]
207739
207813
+
Glu
TTC
[ENA]
¡û
>W1710516071
FNCH01000019
Bacteroidota
Pedobacter terrae [FNCH]
3614
3688
+
Glu
TTC
[ENA]
¡û
>W1710516073
FNCH01000019
Bacteroidota
Pedobacter terrae [FNCH]
8238
8310
+
Glu
TTC
[ENA]
¡û
>W1710519659
FNEX01000003
Bacteroidota
Pedobacter sp. ok626 [FNEX]
255556
255484
-
Glu
TTC
[ENA]
¡û
>W1710519693
FNEX01000017
Bacteroidota
Pedobacter sp. ok626 [FNEX]
9759
9687
-
Glu
TTC
[ENA]
¡û
>W1710522088
FNGY01000005
Bacteroidota
Pedobacter steynii [FNGY]
340364
340436
+
Glu
TTC
[ENA]
¡û
>W1710522090
FNGY01000005
Bacteroidota
Pedobacter steynii [FNGY]
340596
340670
+
Glu
TTC
[ENA]
¡û
>W1710522149
FNGZ01000004
Bacteroidota
Pedobacter antarcticus [FNGZ]
50429
50357
-
Glu
TTC
[ENA]
¡û
>W1710522566
FNHH01000003
Bacteroidota
Daejeonella rubra ruber [FNHH]
146835
146763
-
Glu
TTC
[ENA]
¡û
>W1710551661
FOGG01000004
Bacteroidota
Pedobacter rhizosphaerae [FOGG]
193460
193534
+
Glu
TTC
[ENA]
¡û
>W1710555467
FOJM01000010
Bacteroidota
Pedobacter suwonensis [FOJM]
125101
125173
+
Glu
TTC
[ENA]
¡û
>W1710555469
FOJM01000010
Bacteroidota
Pedobacter suwonensis [FOJM]
129285
129359
+
Glu
TTC
[ENA]
¡û
>W1710560868
FONS01000005
Bacteroidota
Pedobacter antarcticus [FONS]
326660
326732
+
Glu
TTC
[ENA]
¡û
>W1710563358
FOPP01000008
Bacteroidota
Pedobacter insulae [FOPP]
236937
237011
+
Glu
TTC
[ENA]
¡û
>W1710583267
FQUQ01000008
Bacteroidota
Pedobacter caeni [FQUQ]
246754
246682
-
Glu
TTC
[ENA]
¡û
>W1710583269
FQUQ01000008
Bacteroidota
Pedobacter caeni [FQUQ]
246520
246446
-
Glu
TTC
[ENA]
¡û
>W1710602988
FUYR01000003
Bacteroidota
Daejeonella lutea luteus [FUYR]
82936
83010
+
Glu
TTC
[ENA]
¡û
>W1710606349
FWXT01000001
Bacteroidota
Pedobacter africanus [FWXT]
3197607
3197533
-
Glu
TTC
[ENA]
¡û
>W1710606777
FWYB01000003
Bacteroidota
Pedobacter nyackensis [FWYB]
203780
203854
+
Glu
TTC
[ENA]
¡û
>W1710606802
FWYB01000012
Bacteroidota
Pedobacter nyackensis [FWYB]
167836
167910
+
Glu
TTC
[ENA]
¡û
>W1710733616
LGEL01000009
Bacteroidota
Pedobacter panaciterrae [LGEL]
6735
6807
+
Glu
TTC
[ENA]
¡û
>W1710733618
LGEL01000009
Bacteroidota
Pedobacter panaciterrae [LGEL]
6967
7039
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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