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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.340197 (23 seq.)
>W1711299167
MAFY01000016
Bacteroidota
Elizabethkingia anophelis [MAFY]
69264
69190
-
Arg
CCT
[ENA]
¡û
>WENV180346370
OBLN01076115
[OBLN] sediment metagenome; sediment
188
260
+
Arg
CCT
[ENA]
¢þ
>WENV183734815
PJUA01000030
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
55202
55274
+
Arg
CCT
[ENA]
¢þ
>WENV170009490
APMI01000411
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
4585
4513
-
Arg
CCT
[ENA]
¢þ
>WENV170307471
CESJ01195423
[CESJ] marine metagenome genome assembly TARA_084_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
489
563
+
Arg
CCT
[ENA]
¢þ
>WENV170920012
MDTF01014235
[MDTF] marine metagenome; seawater
3637
3563
-
Arg
CCT
[ENA]
¢þ
>WENV170922661
MDTG01034895
[MDTG] marine metagenome; seawater
1617
1691
+
Arg
CCT
[ENA]
¢þ
>WENV170993543
MWWB01345334
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
115
189
+
Arg
CCT
[ENA]
¢þ
>C181063655
CP022382
Bacteroidota
Capnocytophaga canimorsus 7120 [CP022382]
1157616
1157688
+
Arg
CCT
-
¡û
>C181063928
CP022388
Bacteroidota
Capnocytophaga canimorsus H5594 [CP022388]
1087686
1087758
+
Arg
CCT
-
¡û
>C181063971
CP022389
Bacteroidota
Capnocytophaga canimorsus H3936 [CP022389]
1141002
1141074
+
Arg
CCT
-
¡û
>C191093546
CP032681
Bacteroidota
Capnocytophaga canimorsus RBWH [CP032681]
1507654
1507726
+
Arg
CCT
-
¡û
>C191153646
CP037755
Bacteroidota
Pseudocnuella soli 17J28-1 [CP037755]
840721
840793
+
Arg
CCT
-
¡û
>C191213471
LR134513
Bacteroidota
Capnocytophaga canimorsus NCTC11921 [LR134513]
1111570
1111642
+
Arg
CCT
-
¡û
>W141809199
JPRH01000010
Bacteroidota
Chryseobacterium soli [JPRH]
138657
138583
-
Arg
CCT
[ENA]
¡û
>W1810101891
PGTV01000001
Bacteroidota
Capnocytophaga canimorsus DSM 19204 [PGTV]
529722
529650
-
Arg
CCT
[ENA]
¡û
>W1810745624
QOWJ01000016
Bacteroidota
Paracnuella aquatica N24 [QOWJ]
40640
40568
-
Arg
CCT
[ENA]
¡û
>W1810784252
QRAO01000001
Bacteroidota
Marinirhabdus gelatinilytica DSM 101478 [QRAO]
515253
515181
-
Arg
CCT
[ENA]
¡û
>W1510076180
CDOE01000039
Bacteroidota
Capnocytophaga canimorsus Cc12 [CDOE]
5886
5960
+
Arg
CCT
[ENA]
¡û
>W1510076400
CDOJ01000117
Bacteroidota
Capnocytophaga canimorsus Cc2 [CDOJ]
8023
7949
-
Arg
CCT
[ENA]
¡û
>W1510076416
CDOK01000123
Bacteroidota
Capnocytophaga canimorsus Cc11 [CDOK]
7127
7201
+
Arg
CCT
[ENA]
¡û
>C11104989
CP002113
Bacteroidota
Capnocytophaga canimorsus Cc5 [CP002113]
2028326
2028400
+
Arg
CCT
[Ensembl]
¡û
>W1710514170
FNAS01000014
Bacteroidota
Riemerella columbipharyngis [FNAS]
44395
44469
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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