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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.340230 (37 seq.)
>W1711272808
LZFP01000001
Bacteroidota
Maribacter hydrothermalis T28 [LZFP]
331502
331428
-
Arg
CCT
[ENA]
¡û
>W1711797268
MWRZ01000001
Bacteroidota
Zobellia sp. OII3 galactanivorans [MWRZ]
1207036
1207108
+
Arg
CCT
[ENA]
¡û
>C171083195
CP018760
Bacteroidota
Maribacter hydrothermalis T28 [CP018760]
2295007
2294933
-
Arg
CCT
-
¡û
>WENV183631139
OOGU01039974
[OOGU] marine metagenome; sea ice
191
119
-
Arg
CCT
[ENA]
¢þ
>WENV183704029
PDWI01000006
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
93703
93775
+
Arg
CCT
[ENA]
¢þ
>WENV183719466
PDWJ01014544
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1945
1873
-
Arg
CCT
[ENA]
¢þ
>WENV170229676
CEQG01146765
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
515
589
+
Arg
CCT
[ENA]
¢þ
>WENV170229749
CEQG01153578
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
19307
19379
+
Arg
CCT
[ENA]
¢þ
>WENV170482655
CEVM01048879
[CEVM] marine metagenome genome assembly TARA_145_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
191
119
-
Arg
CCT
[ENA]
¢þ
>WENV170672937
LAZR01003494
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
4663
4591
-
Arg
CCT
[ENA]
¢þ
>WENV170922101
MDTG01025582
[MDTG] marine metagenome; seawater
121
47
-
Arg
CCT
[ENA]
¢þ
>C181074235
CP022957
Bacteroidota
Maribacter cobaltidurans B1 [CP022957]
1510241
1510313
+
Arg
CCT
-
¡û
>C191127759
CP034570
Bacteroidota
Maribacter sp. MJ134 [CP034570]
2755849
2755777
-
Arg
CCT
-
¡û
>C191182102
CP040710
Bacteroidota
Aggregatimonas sangjinii F202Z8 [CP040710]
3787848
3787920
+
Arg
CCT
-
¡û
>W141807482
JPOL01000002
Bacteroidota
Flavimarina sp. Hel_I_48 MAR_2009_132 [JPOL]
1388188
1388116
-
Arg
CCT
[ENA]
¡û
>W141819219
JQMD01000002
Bacteroidota
Zobellia uliginosa [JQMD]
4284046
4284118
+
Arg
CCT
[ENA]
¡û
>W1910547504
FZNV01000001
Bacteroidota
Maribacter sedimenticola DSM 19840 [FZNV]
302124
302196
+
Arg
CCT
[ENA]
¡û
>W1910693568
MDGL01000149
Bacteroidota
Maribacter sp. 4G9 [MDGL]
11591
11663
+
Arg
CCT
[ENA]
¡û
>W1910693625
MDGN01000029
Bacteroidota
Maribacter sp. 4U21 [MDGN]
99667
99595
-
Arg
CCT
[ENA]
¡û
>W1911740775
QUSX01000001
Bacteroidota
Maribacter algicola PoM-212 [QUSX]
951878
951950
+
Arg
CCT
[ENA]
¡û
>W1911767829
QXFI01000011
Bacteroidota
Allomuricauda maritima 72 [QXFI]
97082
97154
+
Arg
CCT
[ENA]
¡û
>W1911767864
QXFJ01000009
Bacteroidota
Allomuricauda aequoris NH166 [QXFJ]
151695
151623
-
Arg
CCT
[ENA]
¡û
>W1911768125
QXFO01000027
Bacteroidota
Allomuricauda taeanensis JCM 17757 [QXFO]
134642
134714
+
Arg
CCT
[ENA]
¡û
>W1810514337
QBUK01000005
Bacteroidota
Allomuricauda amoyensis GCL-11 [QBUK]
137983
138055
+
Arg
CCT
[ENA]
¡û
>W1810596581
QGGQ01000006
Bacteroidota
Maribacter polysiphoniae DSM 23514 [QGGQ]
250679
250751
+
Arg
CCT
[ENA]
¡û
>C151090002
CP012040
Bacteroidota
Cyclobacterium amurskyense KCTC 12363 [CP012040]
1589315
1589389
+
Arg
CCT
[Ensembl]
¡û
>C151098487
FP476056
Bacteroidota
Zobellia galactanivorans DsiJT [FP476056]
2349060
2349134
+
Arg
CCT
[Ensembl]
¡û
>C10106857
CP002157
Bacteroidota
Maribacter sp. HTCC2170 [CP002157]
1280635
1280561
-
Arg
CCT
[Ensembl]
¡û
>W1511627008
LDAS01000001
Bacteroidota
Maribacter thermophilus HT7-2 [LDAS]
2672020
2672092
+
Arg
CCT
[ENA]
¡û
>W1611032157
LZFP01000001
Bacteroidota
Maribacter hydrothermalis T28 [LZFP]
331502
331428
-
Arg
CCT
[ENA]
¡û
>W1710513962
FNAO01000001
Bacteroidota
Pricia antarctica [FNAO]
334595
334521
-
Arg
CCT
[ENA]
¡û
>W1710521979
FNGV01000008
Bacteroidota
Kriegella aquimaris [FNGV]
65587
65659
+
Arg
CCT
[ENA]
¡û
>W1710542620
FNZH01000002
Bacteroidota
Cyclobacterium xiamenense halophilum [FNZH]
552048
551974
-
Arg
CCT
[ENA]
¡û
>W1710542923
FNZN01000004
Bacteroidota
Maribacter orientalis [FNZN]
451386
451314
-
Arg
CCT
[ENA]
¡û
>W1710557242
FOKU01000005
Bacteroidota
Allomuricauda taeanensis antarctica [FOKU]
166113
166185
+
Arg
CCT
[ENA]
¡û
>W1710598541
FTOB01000001
Bacteroidota
Zobellia uliginosa [FTOB]
15690
15618
-
Arg
CCT
[ENA]
¡û
>W1710602705
FUYL01000005
Bacteroidota
Maribacter arcticus [FUYL]
295926
295998
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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