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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.340261 (40 seq.)
>WENV180288116
OBIL01055577
[OBIL] metagenome; hydrothermal vent
28
104
+
Asp
GTC
[ENA]
¢þ
>WENV180581900
OCML01020600
[OCML] metagenome; diffuse fluid
112
36
-
Asp
GTC
[ENA]
¢þ
>WENV181209207
OFBD01013663
[OFBD] metagenome; hydrothermal vent
549
625
+
Asp
GTC
[ENA]
¢þ
>WENV181213669
OFBV01019882
[OFBV] metagenome; hydrothermal vent
296
372
+
Asp
GTC
[ENA]
¢þ
>C08000284
CP000361
Campylobacterota
Aliarcobacter butzleri RM4018 [CP000361]
519767
519694
-
Asp
GTC
[Ensembl]
¡û
>WENV183707071
PDWI01006585
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
4789
4865
+
Asp
GTC
[ENA]
¢þ
>WENV183714099
PDWI01168230
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
108
184
+
Asp
GTC
[ENA]
¢þ
>WENV183714103
PDWI01168230
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
606
682
+
Asp
GTC
[ENA]
¢þ
>WENV183715788
PDWI01263155
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1544
1468
-
Asp
GTC
[ENA]
¢þ
>WENV170657823
JTFP01023065
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
731
807
+
Asp
GTC
[ENA]
¢þ
>C181196958
CP031217
Campylobacterota
Halarcobacter bivalviorum LMG 26154 [CP031217]
598702
598626
-
Asp
GTC
-
¡û
>C181196962
CP031217
Campylobacterota
Halarcobacter bivalviorum LMG 26154 [CP031217]
598298
598222
-
Asp
GTC
-
¡û
>C181225281
LT906455
Campylobacterota
Aliarcobacter butzleri NCTC 12481 [LT906455]
519762
519686
-
Asp
GTC
-
¡û
>C191084462
CP032097
Campylobacterota
Arcobacter ellisii LMG 26155 [CP032097]
665381
665305
-
Asp
GTC
-
¡û
>C191084466
CP032097
Campylobacterota
Arcobacter ellisii LMG 26155 [CP032097]
664994
664918
-
Asp
GTC
-
¡û
>C191178308
CP040507
Campylobacterota
Aliarcobacter butzleri JV22 [CP040507]
533373
533297
-
Asp
GTC
-
¡û
>C191186428
CP041070
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [CP041070]
716713
716637
-
Asp
GTC
-
¡û
>C191186432
CP041070
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [CP041070]
716272
716196
-
Asp
GTC
-
¡û
>C141005662
CP006615
Campylobacterota
Aliarcobacter butzleri 7h1h [CP006615]
517744
517668
-
Asp
GTC
[Ensembl]
¡û
>W1911426324
NXIG01000005
Campylobacterota
Arcobacter ellisii CECT 7837 [NXIG]
83124
83048
-
Asp
GTC
[ENA]
¡û
>W1911426328
NXIG01000005
Campylobacterota
Arcobacter ellisii CECT 7837 [NXIG]
82737
82661
-
Asp
GTC
[ENA]
¡û
>W1911426360
NXIH01000001
Campylobacterota
Arcobacter defluvii CECT 7697 [NXIH]
368690
368614
-
Asp
GTC
[ENA]
¡û
>W1911426364
NXIH01000001
Campylobacterota
Arcobacter defluvii CECT 7697 [NXIH]
368302
368226
-
Asp
GTC
[ENA]
¡û
>W1911576889
PDKL01000013
Campylobacterota
Halarcobacter bivalviorum F118-4 [PDKL]
72008
71932
-
Asp
GTC
[ENA]
¡û
>W1911576893
PDKL01000013
Campylobacterota
Halarcobacter bivalviorum F118-4 [PDKL]
71604
71528
-
Asp
GTC
[ENA]
¡û
>W1911576930
PDKM01000009
Campylobacterota
Halarcobacter bivalviorum CECT 7835 [PDKM]
72041
71965
-
Asp
GTC
[ENA]
¡û
>W1911576934
PDKM01000009
Campylobacterota
Halarcobacter bivalviorum CECT 7835 [PDKM]
71637
71561
-
Asp
GTC
[ENA]
¡û
>W1911576945
PDKN01000001
Campylobacterota
Candidatus Marinarcus aquaticus CECT 8987 [PDKN]
69610
69534
-
Asp
GTC
[ENA]
¡û
>W1911576949
PDKN01000001
Campylobacterota
Candidatus Marinarcus aquaticus CECT 8987 [PDKN]
69134
69058
-
Asp
GTC
[ENA]
¡û
>W1911577020
PDKO01000016
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [PDKO]
15405
15329
-
Asp
GTC
[ENA]
¡û
>W1911577024
PDKO01000016
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [PDKO]
14964
14888
-
Asp
GTC
[ENA]
¡û
>W1911746038
QVQX01000004
Campylobacterota
Aliarcobacter butzleri 17-1168 [QVQX]
91166
91242
+
Asp
GTC
[ENA]
¡û
>W1911775154
QXMK01000001
Campylobacterota
Aliarcobacter butzleri 55 [QXMK]
170726
170802
+
Asp
GTC
[ENA]
¡û
>W1911775349
QXNB01000001
Campylobacterota
Aliarcobacter butzleri 6V [QXNB]
12123
12199
+
Asp
GTC
[ENA]
¡û
>C11100405
AP012047
Campylobacterota
Aliarcobacter butzleri ED-1 [AP012047]
498013
497937
-
Asp
GTC
[Ensembl]
¡û
>C11101081
AP012048
Campylobacterota
Arcobacter sp. L [AP012048]
652035
651959
-
Asp
GTC
[Ensembl]
¡û
>C11101085
AP012048
Campylobacterota
Arcobacter sp. L [AP012048]
651648
651572
-
Asp
GTC
[Ensembl]
¡û
>W1511517367
JXXG01000001
Campylobacterota
Halarcobacter anaerophilus IR-1 [JXXG]
885498
885574
+
Asp
GTC
[ENA]
¡û
>W1511517371
JXXG01000001
Campylobacterota
Halarcobacter anaerophilus IR-1 [JXXG]
885939
886015
+
Asp
GTC
[ENA]
¡û
>W11143286
AEPT01000011
Campylobacterota
Aliarcobacter butzleri JV22 [AEPT]
9486
9410
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK