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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.340262 (27 seq.)
>W1711083804
LSVF01000005
Bacillota
Thermoactinomyces sp. AS95 [LSVF]
299501
299575
+
Arg
CCG
[ENA]
¡û
>C171098386
CP019699
Bacillota
Novibacillus thermophilus SG-1 [CP019699]
3293673
3293747
+
Arg
CCG
-
¡û
>W131203811
ASZU01000008
Bacillota
Laceyella sacchari 1·î1Æü [ASZU]
286748
286674
-
Arg
CCG
[ENA]
¡û
>WENV180041789
LLBZ010487023
[LLBZ] soil metagenome; soil from tomato rhizosphere
618
545
-
Arg
CCG
[ENA]
¢þ
>C181124174
CP025943
Bacillota
Laceyella sacchari FBKL4.010 [CP025943]
3096056
3096130
+
Arg
CCG
-
¡û
>C191119655
CP034118
Bacillota
Staphylospora marina SCSIO 07575 [CP034118]
2427187
2427261
+
Arg
CCG
-
¡û
>C191151666
CP036487
Bacillota
Thermoactinomyces vulgaris CDF [CP036487]
1157384
1157458
+
Arg
CCG
-
¡û
>C191171344
CP039710
Bacillota
Thermoactinomyces vulgaris 2H [CP039710]
459824
459898
+
Arg
CCG
-
¡û
>W141811986
JPZM01000024
Bacillota
Thermoactinomyces sp. Gus2-1 [JPZM]
470
544
+
Arg
CCG
[ENA]
¡û
>W1911137471
NOWF01000004
Bacillota
Paludifilum halophilum DSM 102817 [NOWF]
310766
310692
-
Arg
CCG
[ENA]
¡û
>W1911680769
QJKK01000004
Bacillota
Thermoflavimicrobium daqui FBKL4.011 [QJKK]
241835
241909
+
Arg
CCG
[ENA]
¡û
>W1810356769
PVNE01000006
Bacillota
Planifilum fimeticola DSM 44946 [PVNE]
107377
107303
-
Arg
CCG
[ENA]
¡û
>W1810463508
PZZP01000002
Bacillota
Desmospora activa DSM 45169 [PZZP]
230793
230867
+
Arg
CCG
[ENA]
¡û
>W1810504175
QBKR01000011
Bacillota
Melghirimyces profundicolus DSM 45787 [QBKR]
36829
36903
+
Arg
CCG
[ENA]
¡û
>W1511313109
JPST01000008
Bacillota
Thermoactinomyces daqus H-18 [JPST]
72723
72649
-
Arg
CCG
[ENA]
¡û
>W1511682189
LFJU01000016
Bacillota
Thermoactinomyces sp. CDF [LFJU]
9290
9216
-
Arg
CCG
[ENA]
¡û
>W11163419
AFHT01000090
Bacillota
Desmospora sp. 8437 [AFHT]
33996
34070
+
Arg
CCG
[ENA]
¡û
>W1610615099
LGKI01000145
Bacillota
Thermoactinomyces vulgaris [LGKI]
68550
68624
+
Arg
CCG
[ENA]
¡û
>W1610922557
LSVF01000005
Bacillota
Thermoactinomyces sp. AS95 [LSVF]
299501
299575
+
Arg
CCG
[ENA]
¡û
>W1710511932
FMZA01000002
Bacillota
Melghirimyces thermohalophilus [FMZA]
37732
37658
-
Arg
CCG
[ENA]
¡û
>W1710528940
FNNQ01000003
Bacillota
Marininema mesophilum [FNNQ]
239813
239739
-
Arg
CCG
[ENA]
¡û
>W1710547083
FOCQ01000018
Bacillota
Lihuaxuella thermophila [FOCQ]
73226
73300
+
Arg
CCG
[ENA]
¡û
>W1710561773
FOOK01000010
Bacillota
Planifilum fulgidum [FOOK]
16447
16373
-
Arg
CCG
[ENA]
¡û
>W1710565964
FORR01000001
Bacillota
Thermoflavimicrobium dichotomicum [FORR]
185573
185647
+
Arg
CCG
[ENA]
¡û
>W1710576400
FPAA01000001
Bacillota
Marininema halotolerans [FPAA]
187707
187781
+
Arg
CCG
[ENA]
¡û
>W1710598644
FTOD01000002
Bacillota
Kroppenstedtia eburnea [FTOD]
346183
346109
-
Arg
CCG
[ENA]
¡û
>W1710736345
LGKI01000145
Bacillota
Thermoactinomyces vulgaris [LGKI]
68550
68624
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK