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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.340294 (60 seq.)
>W1711179421
LWHQ01000022
Alphaproteobacteria
Methylobacterium platani [LWHQ]
46346
46272
-
Thr
GGT
[ENA]
¡û
>W1711179422
LWHQ01000022
Alphaproteobacteria
Methylobacterium platani [LWHQ]
46186
46112
-
Thr
GGT
[ENA]
¡û
>W131163751
ARAA01000017
Alphaproteobacteria
Methylobacterium sp. WSM2598 [ARAA]
242052
242126
+
Thr
GGT
[ENA]
¡û
>w026454
ABAY01000002
Alphaproteobacteria
Methylobacterium sp. 4-46 [ABAY]
96925
97001
+
Thr
GGT
[ENA]
¡û
>WENV180639174
OCRI01171042
[OCRI] marine metagenome; Sterile flask
74
148
+
Thr
GGT
[ENA]
¢þ
>WENV181223671
OFDC01064786
[OFDC] hot springs metagenome; Water
119
193
+
Thr
GGT
[ENA]
¢þ
>WENV181228063
OFDN01137167
[OFDN] hot springs metagenome; Water
21
95
+
Thr
GGT
[ENA]
¢þ
>W08006130
ABIP01000004
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [ABIP]
80070
80144
+
Thr
GGT
[ENA]
¡û
>W08006131
ABIP01000004
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [ABIP]
96766
96840
+
Thr
GGT
[ENA]
¡û
>WENV182546354
OJBO01012418
[OJBO] seawater metagenome; Sea water
754
828
+
Thr
GGT
[ENA]
¢þ
>WENV182550070
OJBZ01002280
[OJBZ] seawater metagenome; Sea water
2438
2364
-
Thr
GGT
[ENA]
¢þ
>C08006454
CP000943
Alphaproteobacteria
Methylobacterium sp. 4-46 [CP000943]
5207846
5207775
-
Thr
GGT
[Ensembl]
¡û
>WENV183057587
OLHL01013117
[OLHL] seawater metagenome; Sea water
268
194
-
Thr
GGT
[ENA]
¢þ
>WENV170434170
CEUS01240457
[CEUS] marine metagenome genome assembly TARA_125_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
524
598
+
Thr
GGT
[ENA]
¢þ
>WENV170672224
LAZR01000033
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
62963
62889
-
Thr
GGT
[ENA]
¢þ
>W09111650
ABXE01000007
Alphaproteobacteria
Rhodobacteraceae bacterium HTCC2083 HTCC2083 [ABXE]
132845
132771
-
Thr
GGT
[ENA]
¡û
>C181180136
CP029552
Alphaproteobacteria
Methylobacterium sp. 17Sr1-1 [CP029552]
3319090
3319016
-
Thr
GGT
-
¡û
>C181180137
CP029552
Alphaproteobacteria
Methylobacterium sp. 17Sr1-1 [CP029552]
3318930
3318856
-
Thr
GGT
-
¡û
>C181180200
CP029553
Alphaproteobacteria
Methylobacterium terrae 17Sr1-28 [CP029553]
4478576
4478650
+
Thr
GGT
-
¡û
>C181180201
CP029553
Alphaproteobacteria
Methylobacterium terrae 17Sr1-28 [CP029553]
4478736
4478810
+
Thr
GGT
-
¡û
>C09107883
CP001349
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [CP001349]
104965
104891
-
Thr
GGT
[Ensembl]
¡û
>C09107884
CP001349
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [CP001349]
88269
88195
-
Thr
GGT
[Ensembl]
¡û
>W1911708578
QOWC01000160
Alphaproteobacteria
Methylobacterium crusticola MIMD6 [QOWC]
19007
19081
+
Thr
GGT
[ENA]
¡û
>W1810079855
PELK01000048
Alphaproteobacteria
Methylobacterium frigidaeris IER25-16 [PELK]
10055
9981
-
Thr
GGT
[ENA]
¡û
>W1810079892
PELK01001427
Alphaproteobacteria
Methylobacterium frigidaeris IER25-16 [PELK]
5518
5592
+
Thr
GGT
[ENA]
¡û
>W1511400906
JTHF01000223
Alphaproteobacteria
Methylobacterium indicum SE2.11 [JTHF]
7563
7637
+
Thr
GGT
[ENA]
¡û
>W1511400907
JTHF01000223
Alphaproteobacteria
Methylobacterium indicum SE2.11 [JTHF]
7723
7797
+
Thr
GGT
[ENA]
¡û
>W1511400949
JTHG01000117
Alphaproteobacteria
Methylobacterium indicum SE3.6 [JTHG]
21947
21873
-
Thr
GGT
[ENA]
¡û
>W1511400950
JTHG01000117
Alphaproteobacteria
Methylobacterium indicum SE3.6 [JTHG]
21787
21713
-
Thr
GGT
[ENA]
¡û
>W1511563259
LABX01000195
Alphaproteobacteria
Methylobacterium aquaticum DSM 16371 [LABX]
9361
9435
+
Thr
GGT
[ENA]
¡û
>W1511563260
LABX01000195
Alphaproteobacteria
Methylobacterium aquaticum DSM 16371 [LABX]
9522
9596
+
Thr
GGT
[ENA]
¡û
>W1511563326
LABY01000210
Alphaproteobacteria
Methylobacterium variabile DSM 16961 [LABY]
8706
8632
-
Thr
GGT
[ENA]
¡û
>W1511563351
LABZ01000058
Alphaproteobacteria
Methylobacterium tarhaniae DSM 25844 [LABZ]
41812
41738
-
Thr
GGT
[ENA]
¡û
>W1511563352
LABZ01000058
Alphaproteobacteria
Methylobacterium tarhaniae DSM 25844 [LABZ]
41652
41578
-
Thr
GGT
[ENA]
¡û
>C161001197
AP014704
Alphaproteobacteria
Methylobacterium aquaticum MA-22A [AP014704]
44757
44683
-
Thr
GGT
[Ensembl]
¡û
>C161001198
AP014704
Alphaproteobacteria
Methylobacterium aquaticum MA-22A [AP014704]
44597
44523
-
Thr
GGT
[Ensembl]
¡û
>W1610047419
BBDG01001482
Alphaproteobacteria
Methylobacterium platani JCM 14648 [BBDG]
115
189
+
Thr
GGT
[ENA]
¡û
>W1610047420
BBDG01001482
Alphaproteobacteria
Methylobacterium platani JCM 14648 [BBDG]
275
349
+
Thr
GGT
[ENA]
¡û
>W1610590434
LDRL01000109
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
7472
7546
+
Thr
GGT
[ENA]
¡û
>W1610590435
LDRL01000109
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
7632
7706
+
Thr
GGT
[ENA]
¡û
>W1610590494
LDRM01000071
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
7523
7597
+
Thr
GGT
[ENA]
¡û
>W1610590495
LDRM01000071
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
7683
7757
+
Thr
GGT
[ENA]
¡û
>W1610590570
LDRN01000096
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
7582
7656
+
Thr
GGT
[ENA]
¡û
>W1610590571
LDRN01000096
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
7742
7816
+
Thr
GGT
[ENA]
¡û
>W1610987322
LWHQ01000022
Alphaproteobacteria
Methylobacterium platani [LWHQ]
46346
46272
-
Thr
GGT
[ENA]
¡û
>W1610987323
LWHQ01000022
Alphaproteobacteria
Methylobacterium platani [LWHQ]
46186
46112
-
Thr
GGT
[ENA]
¡û
>W1710044024
BBDG01001482
Alphaproteobacteria
Methylobacterium platani JCM 14648 [BBDG]
115
189
+
Thr
GGT
[ENA]
¡û
>W1710044025
BBDG01001482
Alphaproteobacteria
Methylobacterium platani JCM 14648 [BBDG]
275
349
+
Thr
GGT
[ENA]
¡û
>W1710548816
FOEB01000007
Alphaproteobacteria
Methylobacterium sp. ap11 [FOEB]
110632
110558
-
Thr
GGT
[ENA]
¡û
>W1710548817
FOEB01000007
Alphaproteobacteria
Methylobacterium sp. ap11 [FOEB]
110472
110398
-
Thr
GGT
[ENA]
¡û
>W1710560703
FONO01000045
Alphaproteobacteria
Methylobacterium sp. yr596 [FONO]
15725
15799
+
Thr
GGT
[ENA]
¡û
>W1710560704
FONO01000045
Alphaproteobacteria
Methylobacterium sp. yr596 [FONO]
15885
15959
+
Thr
GGT
[ENA]
¡û
>W1710579068
FPCB01000030
Alphaproteobacteria
Methylobacterium sp. 174MFSha1.1 [FPCB]
19271
19197
-
Thr
GGT
[ENA]
¡û
>W1710579069
FPCB01000030
Alphaproteobacteria
Methylobacterium sp. 174MFSha1.1 [FPCB]
19113
19039
-
Thr
GGT
[ENA]
¡û
>W1710709714
LDRL01000109
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
7472
7546
+
Thr
GGT
[ENA]
¡û
>W1710709715
LDRL01000109
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
7632
7706
+
Thr
GGT
[ENA]
¡û
>W1710709774
LDRM01000071
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
7523
7597
+
Thr
GGT
[ENA]
¡û
>W1710709775
LDRM01000071
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
7683
7757
+
Thr
GGT
[ENA]
¡û
>W1710709850
LDRN01000096
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
7582
7656
+
Thr
GGT
[ENA]
¡û
>W1710709851
LDRN01000096
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
7742
7816
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK