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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.340527 (20 seq.)
>W1710806132
LKAQ01000004
Thermodesulfobacteriota
Pseudodesulfovibrio hydrargyri dechloracetivorans [LKAQ]
2766910
2766834
-
Pro
CGG
[ENA]
¡û
>WENV180042875
LQAG01010105
[LQAG] bioreactor metagenome; bioreactor_3 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
110
34
-
Pro
CGG
[ENA]
¡û
>WENV180043584
LQAI01001364
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
3808
3884
+
Pro
CGG
[ENA]
¡û
>WENV180044096
LQAJ01003610
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
1005
1081
+
Pro
CGG
[ENA]
¡û
>WENV183747683
PPCM01017123
[PPCM] marine sediment metagenome; marine sediment
783
859
+
Pro
CGG
[ENA]
¡û
>WENV170419615
CEUM01134568
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
20164
20240
+
Pro
CGG
[ENA]
¡û
>WENV170437532
CEUU01046793
[CEUU] marine metagenome genome assembly TARA_122_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
76
1
-
Pro
CGG
[ENA]
¡û
>WENV170440749
CEUV01126383
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
346
270
-
Pro
CGG
[ENA]
¡û
>WENV170469583
CEVF01126655
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
250
326
+
Pro
CGG
[ENA]
¡û
>WENV170898395
MDTD01125283
[MDTD] marine metagenome; seawater
14073
13997
-
Pro
CGG
[ENA]
¡û
>C181226977
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
997089
997165
+
Pro
CGG
-
¡û
>W2011654893
SOBK01000005
Thermodesulfobacteriota
Pseudodesulfovibrio indicus DSM 101483 [SOBK]
37042
37118
+
Pro
CGG
[ENA]
¡û
>W2012442021
WUEH01000005
Thermodesulfobacteriota
Pseudodesulfovibrio sp. JC047 [WUEH]
158659
158583
-
Pro
CGG
[ENA]
¡û
>W2110515218
JAFMPN010000005
Thermodesulfobacteriota
Desulfovibrio sp. Huiquan2017 [JAFMPN]
36222
36298
+
Pro
CGG
[ENA]
¡û
>C231004615
AP024485
Thermodesulfobacteriota
Pseudodesulfovibrio sediminis SF6 [AP024485]
159682
159606
-
Pro
CGG
-
¡û
>C241108998
CP046400
Thermodesulfobacteriota
Pseudodesulfovibrio cashew SRB007 [CP046400]
3337827
3337903
+
Pro
CGG
-
¡û
>C241149570
CP051216
Thermodesulfobacteriota
Pseudodesulfovibrio sp. zrk46 [CP051216]
3252501
3252425
-
Pro
CGG
-
¡û
>W11149104
AEUJ01000001
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [AEUJ]
237174
237098
-
Pro
CGG
[ENA]
¡û
>C121009014
CP003220
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [CP003220]
237174
237098
-
Pro
CGG
[Ensembl]
¡û
>C161068256
CP014206
Thermodesulfobacteriota
Pseudodesulfovibrio indicus J2 [CP014206]
2944749
2944825
+
Pro
CGG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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