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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.340599 (61 seq.)
>W1711081229
LSSA01000098
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
37746
37675
-
Thr
CGT
[ENA]
¡û
>W1711120913
LUHJ01000017
Cyanobacteriota
Anabaena sp. 4-3 [LUHJ]
101336
101265
-
Thr
CGT
[ENA]
¡û
>W1711283592
LZQD01000001
Cyanobacteriota
Trichormus sp. NMC-1 [LZQD]
899864
899935
+
Thr
CGT
[ENA]
¡û
>W1711335793
MBRD01000033
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
671027
671098
+
Thr
CGT
[ENA]
¡û
>W131058355
ANFJ01000002
Cyanobacteriota
Fortiea contorta PCC 7126 [ANFJ]
1116562
1116491
-
Thr
CGT
[ENA]
¡û
>W131089971
AOFE01000015
Cyanobacteriota
Nodularia spumigena CCY9414 [AOFE]
23049
23120
+
Thr
CGT
[ENA]
¡û
>W1711711327
MTAV01000039
Cyanobacteriota
Nostoc sp. T09 [MTAV]
58910
58839
-
Thr
CGT
[ENA]
¡û
>W1711711406
MTAW01000235
Cyanobacteriota
Nostoc sp. 106C [MTAW]
42406
42332
-
Thr
CGT
[ENA]
¡û
>W1711711473
MTAX01000144
Cyanobacteriota
Nostoc sp. RF31YmG RF31Y [MTAX]
19944
19870
-
Thr
CGT
[ENA]
¡û
>PL171000152
AP018223
Cyanobacteria
Nostoc linckia NIES-25 plasmid:plasmid1
1132553
1132624
+
Thr
CGT
[ENA]
¡û
>C001210
CP000117
Cyanobacteriota
Trichormus variabilis ATCC 29413 [CP000117]
3948182
3948253
+
Thr
CGT
[Ensembl]
¡û
>C015286
BA000019
Cyanobacteriota
Nostoc sp. PCC 7120 = FACHB-418 [BA000019]
4360902
4360973
+
Thr
CGT
[Ensembl]
¡û
>w021693
AAVW01000033
Cyanobacteriota
Nodularia spumigena CCY9414 [AAVW]
26517
26591
+
Thr
CGT
[ENA]
¡û
>W141022915
AJWF01000009
Cyanobacteriota
Anabaena sp. PCC 7108 [AJWF]
727051
726980
-
Thr
CGT
[ENA]
¡û
>w002261
AAAY02000024
Cyanobacteriota
Nostoc punctiforme [AAAY]
49596
49670
+
Thr
CGT
[ENA]
¡û
>C08006921
CP001037
Cyanobacteriota
Nostoc punctiforme PCC 73102 ATCC 29133; PCC 73102 [CP001037]
7131335
7131264
-
Thr
CGT
[Ensembl]
¡û
>WENV171003075
NNBT01000086
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
2310
2239
-
Thr
CGT
[ENA]
¢þ
>WENV171003486
NNBU01000106
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
15546
15617
+
Thr
CGT
[ENA]
¢þ
>WENV171003681
NNBV01000104
[NNBV] plant metagenome; symbiotic tissue sample KVS11
19569
19498
-
Thr
CGT
[ENA]
¢þ
>C181004753
AP018172
Cyanobacteriota
Calothrix sp. NIES-2098 [AP018172]
3486424
3486495
+
Thr
CGT
-
¡û
>C181043646
CP020114
Cyanobacteriota
Nodularia spumigena UHCC 0039 [CP020114]
2369993
2369922
-
Thr
CGT
-
¡û
>C181078451
CP023278
Cyanobacteriota
Nostoc sp. CENA543 [CP023278]
560404
560333
-
Thr
CGT
-
¡û
>W09101148
AAEA01000004
Cyanobacteriota
Trichormus variabilis ATCC 29413 [AAEA]
261603
261532
-
Thr
CGT
[ENA]
¡û
>C181105266
CP024785
Cyanobacteriota
Nostoc flagelliforme CCNUN1 [CP024785]
2523194
2523123
-
Thr
CGT
-
¡û
>C181137762
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
1200509
1200438
-
Thr
CGT
-
¡û
>C181137798
CP026692
Cyanobacteriota
Nostoc sp. 'Lobaria pulmonaria [5183] cyanobiont' [CP026692]
1735807
1735878
+
Thr
CGT
-
¡û
>W09125753
ACIR01000038
Cyanobacteriota
Trichormus azollae 708 [ACIR]
18747
18818
+
Thr
CGT
[ENA]
¡û
>C191001236
AP018318
Cyanobacteriota
Nostoc sp. HK-01 NIES-2109 [AP018318]
2349570
2349641
+
Thr
CGT
-
¡û
>C191083060
CP031941
Cyanobacteriota
Nostoc sphaeroides Kutzing En [CP031941]
4920447
4920376
-
Thr
CGT
-
¡û
>W1910008420
BDGE01000086
Cyanobacteriota
Nostoc cycadae WK-1 [BDGE]
10977
11048
+
Thr
CGT
[ENA]
¡û
>W1910020531
BDUD01000001
Cyanobacteriota
Nostoc commune NIES-4072 [BDUD]
4395183
4395112
-
Thr
CGT
[ENA]
¡û
>W1910596172
LAGX01000004
Cyanobacteriota
Nostoc linckia z1 [LAGX]
161115
161186
+
Thr
CGT
[ENA]
¡û
>W1910596257
LAGY01000005
Cyanobacteriota
Nostoc linckia z2 [LAGY]
65444
65373
-
Thr
CGT
[ENA]
¡û
>W1910596337
LAGZ01000003
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
162453
162524
+
Thr
CGT
[ENA]
¡û
>W1910596438
LAHA01000002
Cyanobacteriota
Nostoc linckia z4 [LAHA]
200657
200728
+
Thr
CGT
[ENA]
¡û
>W1910596747
LAHE01000008
Cyanobacteriota
Nostoc linckia z9 [LAHE]
107373
107444
+
Thr
CGT
[ENA]
¡û
>W1910596907
LAHF01000322
Cyanobacteriota
Nostoc linckia z13 [LAHF]
393
464
+
Thr
CGT
[ENA]
¡û
>W1910597100
LAHI01000035
Cyanobacteriota
Nostoc linckia z16 [LAHI]
63724
63653
-
Thr
CGT
[ENA]
¡û
>W1910597176
LAHJ01000002
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
45032
44961
-
Thr
CGT
[ENA]
¡û
>W1910646646
LWSY01000068
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
108313
108242
-
Thr
CGT
[ENA]
¡û
>W1910792681
MRBZ01000046
Cyanobacteriota
Nostoc calcicola FACHB-389 [MRBZ]
49175
49104
-
Thr
CGT
[ENA]
¡û
>W1911118664
NOLI01000079
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 213 [NOLI]
403
332
-
Thr
CGT
[ENA]
¡û
>W1911118732
NOLJ01000002
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 210A [NOLJ]
770100
770171
+
Thr
CGT
[ENA]
¡û
>W1911118806
NOLK01000025
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
9837
9908
+
Thr
CGT
[ENA]
¡û
>W1911244309
NSHF01000598
Cyanobacteriota
Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 [NSHF]
2583
2654
+
Thr
CGT
[ENA]
¡û
>C11115532
CP002059
Cyanobacteriota
Nostoc azollae' 0708 [CP002059]
633774
633845
+
Thr
CGT
[Ensembl]
¡û
>W1511501676
JXCA01000014
Cyanobacteriota
Scytonema tolypothrichoides VB-61278 [JXCA]
874714
874785
+
Thr
CGT
[ENA]
¡û
>C161005327
CP007203
Cyanobacteriota
Nodularia spumigena CCY9414 [CP007203]
1022329
1022400
+
Thr
CGT
[Ensembl]
¡û
>C161038906
CP012036
Cyanobacteriota
Nostoc piscinale CENA21 [CP012036]
6551047
6551118
+
Thr
CGT
[Ensembl]
¡û
>W1610003518
AGCR01000005
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
639585
639656
+
Thr
CGT
[ENA]
¡û
>W1610084850
CDHJ01000035
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
13975
14046
+
Thr
CGT
[ENA]
¡û
>C131004929
CP003642
Cyanobacteriota
Cylindrospermum stagnale PCC 7417 [CP003642]
5758904
5758833
-
Thr
CGT
[Ensembl]
¡û
>C131004262
CP003552
Cyanobacteriota
Nostoc sp. PCC 7524 [CP003552]
3389110
3389181
+
Thr
CGT
[Ensembl]
¡û
>C131004163
CP003548
Cyanobacteriota
Nostoc sp. PCC 7107 [CP003548]
4741075
4741004
-
Thr
CGT
[Ensembl]
¡û
>W1610656781
LJOR01000005
Cyanobacteriota
Anabaena sp. 39858 [LJOR]
32511
32582
+
Thr
CGT
[ENA]
¡û
>W1610932141
LUHI01000086
Cyanobacteriota
Anabaena sp. CA = ATCC 33047 [LUHI]
12207
12278
+
Thr
CGT
[ENA]
¡û
>W1610932150
LUHJ01000017
Cyanobacteriota
Anabaena sp. 4-3 [LUHJ]
101336
101265
-
Thr
CGT
[ENA]
¡û
>W1611066500
MBRD01000033
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
671027
671098
+
Thr
CGT
[ENA]
¡û
>W1710004138
AGCR01000005
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
639585
639656
+
Thr
CGT
[ENA]
¡û
>W1710087971
BDUB01000001
Cyanobacteriota
Nodularia sp. NIES-3585 [BDUB]
2376011
2376082
+
Thr
CGT
[ENA]
¡û
>W1710089712
CDHJ01000035
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
13975
14046
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK