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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.340826 (19 seq.)
>W131053716
ANAH01000058
Myxococcota
Cystobacter fuscus DSM 2262 [ANAH]
36334
36406
+
Val
CAC
[ENA]
¡û
>W131053717
ANAH01000058
Myxococcota
Cystobacter fuscus DSM 2262 [ANAH]
36431
36503
+
Val
CAC
[ENA]
¡û
>W1711625263
MPIN01000005
Myxococcota
Cystobacter ferrugineus [MPIN]
203395
203323
-
Val
CAC
[ENA]
¡û
>W1711625264
MPIN01000005
Myxococcota
Cystobacter ferrugineus [MPIN]
203298
203226
-
Val
CAC
[ENA]
¡û
>W1711628668
MPOI01000019
Myxococcota
Archangium sp. Cb G35 [MPOI]
73645
73717
+
Val
CAC
[ENA]
¡û
>W1711628669
MPOI01000019
Myxococcota
Archangium sp. Cb G35 [MPOI]
73745
73817
+
Val
CAC
[ENA]
¡û
>WENV180021056
FTDO01000520
[FTDO] metagenome; soil
6131
6205
+
Val
CAC
[ENA]
¢þ
>C181057846
CP022098
Myxococcota
Cystobacter fuscus DSM 52655 [CP022098]
5317737
5317809
+
Val
CAC
-
¡û
>C181057847
CP022098
Myxococcota
Cystobacter fuscus DSM 52655 [CP022098]
5317834
5317906
+
Val
CAC
-
¡û
>C181059821
CP022163
Myxococcota
Melittangium boletus DSM 14713 [CP022163]
8192430
8192502
+
Val
CAC
-
¡û
>C181059822
CP022163
Myxococcota
Melittangium boletus DSM 14713 [CP022163]
8192528
8192599
+
Val
CAC
-
¡û
>W141806683
JPMI01000300
Myxococcota
Archangium violaceum Cb vi76 [JPMI]
56920
56992
+
Val
CAC
[ENA]
¡û
>W141806684
JPMI01000300
Myxococcota
Archangium violaceum Cb vi76 [JPMI]
57022
57096
+
Val
CAC
[ENA]
¡û
>W1810452241
PZOX01000025
Myxococcota
Vitiosangium sp. GDMCC 1.1324 [PZOX]
157475
157547
+
Val
CAC
[ENA]
¡û
>W1810452242
PZOX01000025
Myxococcota
Vitiosangium sp. GDMCC 1.1324 [PZOX]
157572
157644
+
Val
CAC
[ENA]
¡û
>W1810884725
QUMU01000018
Myxococcota
Archangium gephyra DSM 2261 [QUMU]
9556
9484
-
Val
CAC
[ENA]
¡û
>W1810884726
QUMU01000018
Myxococcota
Archangium gephyra DSM 2261 [QUMU]
9456
9384
-
Val
CAC
[ENA]
¡û
>C151083559
CP011509
Myxococcota
Archangium gephyra DSM 2261 [CP011509]
6144534
6144606
+
Val
CAC
[Ensembl]
¡û
>C151083560
CP011509
Myxococcota
Archangium gephyra DSM 2261 [CP011509]
6144634
6144706
+
Val
CAC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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