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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.340856 (98 seq.)
>W1711571558
MNAL01000003
Gammaproteobacteria
Glaesserella parasuis [MNAL]
63343
63417
+
Gln
TTG
[ENA]
¡û
>W1711571559
MNAL01000003
Gammaproteobacteria
Glaesserella parasuis [MNAL]
63464
63538
+
Gln
TTG
[ENA]
¡û
>W1711571789
MNAP01000007
Gammaproteobacteria
Glaesserella parasuis [MNAP]
16800
16726
-
Gln
TTG
[ENA]
¡û
>W1711571790
MNAP01000007
Gammaproteobacteria
Glaesserella parasuis [MNAP]
16679
16605
-
Gln
TTG
[ENA]
¡û
>W1711571835
MNAQ01000007
Gammaproteobacteria
Glaesserella parasuis [MNAQ]
16800
16726
-
Gln
TTG
[ENA]
¡û
>W1711571836
MNAQ01000007
Gammaproteobacteria
Glaesserella parasuis [MNAQ]
16679
16605
-
Gln
TTG
[ENA]
¡û
>W1711571881
MNAR01000007
Gammaproteobacteria
Glaesserella parasuis [MNAR]
16800
16726
-
Gln
TTG
[ENA]
¡û
>W1711571882
MNAR01000007
Gammaproteobacteria
Glaesserella parasuis [MNAR]
16679
16605
-
Gln
TTG
[ENA]
¡û
>W1711571952
MNAS01000032
Gammaproteobacteria
Glaesserella parasuis [MNAS]
16792
16718
-
Gln
TTG
[ENA]
¡û
>W1711571953
MNAS01000032
Gammaproteobacteria
Glaesserella parasuis [MNAS]
16671
16597
-
Gln
TTG
[ENA]
¡û
>W1711571974
MNAT01000006
Gammaproteobacteria
Glaesserella parasuis [MNAT]
42989
43063
+
Gln
TTG
[ENA]
¡û
>W1711571975
MNAT01000006
Gammaproteobacteria
Glaesserella parasuis [MNAT]
43110
43184
+
Gln
TTG
[ENA]
¡û
>W1711572015
MNAU01000002
Gammaproteobacteria
Glaesserella parasuis [MNAU]
77982
77908
-
Gln
TTG
[ENA]
¡û
>W1711572016
MNAU01000002
Gammaproteobacteria
Glaesserella parasuis [MNAU]
77861
77787
-
Gln
TTG
[ENA]
¡û
>W1711572060
MNAV01000003
Gammaproteobacteria
Glaesserella parasuis [MNAV]
78519
78445
-
Gln
TTG
[ENA]
¡û
>W1711572061
MNAV01000003
Gammaproteobacteria
Glaesserella parasuis [MNAV]
78398
78324
-
Gln
TTG
[ENA]
¡û
>W1711572109
MNAW01000003
Gammaproteobacteria
Glaesserella parasuis [MNAW]
78175
78101
-
Gln
TTG
[ENA]
¡û
>W1711572110
MNAW01000003
Gammaproteobacteria
Glaesserella parasuis [MNAW]
78054
77980
-
Gln
TTG
[ENA]
¡û
>W1711572156
MNAX01000003
Gammaproteobacteria
Glaesserella parasuis [MNAX]
78175
78101
-
Gln
TTG
[ENA]
¡û
>W1711572157
MNAX01000003
Gammaproteobacteria
Glaesserella parasuis [MNAX]
78054
77980
-
Gln
TTG
[ENA]
¡û
>W1711572207
MNAY01000003
Gammaproteobacteria
Glaesserella parasuis [MNAY]
64662
64736
+
Gln
TTG
[ENA]
¡û
>W1711572208
MNAY01000003
Gammaproteobacteria
Glaesserella parasuis [MNAY]
64783
64857
+
Gln
TTG
[ENA]
¡û
>W1711572258
MNAZ01000005
Gammaproteobacteria
Glaesserella parasuis [MNAZ]
62706
62780
+
Gln
TTG
[ENA]
¡û
>W1711572259
MNAZ01000005
Gammaproteobacteria
Glaesserella parasuis [MNAZ]
62827
62901
+
Gln
TTG
[ENA]
¡û
>W1711603327
MOLW01000173
Gammaproteobacteria
Glaesserella parasuis [MOLW]
11874
11800
-
Gln
TTG
[ENA]
¡û
>W1711603328
MOLW01000173
Gammaproteobacteria
Glaesserella parasuis [MOLW]
11753
11679
-
Gln
TTG
[ENA]
¡û
>W1711765807
MUXW01000003
Gammaproteobacteria
Glaesserella parasuis [MUXW]
43715
43789
+
Gln
TTG
[ENA]
¡û
>W1711765808
MUXW01000003
Gammaproteobacteria
Glaesserella parasuis [MUXW]
43836
43910
+
Gln
TTG
[ENA]
¡û
>W1711765987
MUXZ01000016
Gammaproteobacteria
Canicola haemoglobinophilus [MUXZ]
37307
37381
+
Gln
TTG
[ENA]
¡û
>C171104134
CP020085
Gammaproteobacteria
Glaesserella parasuis CL120103 [CP020085]
890456
890382
-
Gln
TTG
-
¡û
>C171104135
CP020085
Gammaproteobacteria
Glaesserella parasuis CL120103 [CP020085]
890335
890261
-
Gln
TTG
-
¡û
>W131099148
AOSU01000020
Gammaproteobacteria
Glaesserella parasuis gx033 [AOSU]
8955
9029
+
Gln
TTG
[ENA]
¡û
>W131099149
AOSU01000020
Gammaproteobacteria
Glaesserella parasuis gx033 [AOSU]
9076
9150
+
Gln
TTG
[ENA]
¡û
>W141051683
ANKT01000037
Gammaproteobacteria
Glaesserella parasuis str. Nagasaki [ANKT]
67880
67954
+
Gln
TTG
[ENA]
¡û
>W141051684
ANKT01000037
Gammaproteobacteria
Glaesserella parasuis str. Nagasaki [ANKT]
68001
68075
+
Gln
TTG
[ENA]
¡û
>W141062937
APBT01000034
Gammaproteobacteria
Glaesserella parasuis str. Nagasaki [APBT]
17022
16948
-
Gln
TTG
[ENA]
¡û
>W141062938
APBT01000034
Gammaproteobacteria
Glaesserella parasuis str. Nagasaki [APBT]
16901
16827
-
Gln
TTG
[ENA]
¡û
>W141063018
APBV01000043
Gammaproteobacteria
Glaesserella parasuis MN-H [APBV]
19114
19040
-
Gln
TTG
[ENA]
¡û
>W141063019
APBV01000043
Gammaproteobacteria
Glaesserella parasuis MN-H [APBV]
18993
18919
-
Gln
TTG
[ENA]
¡û
>W141063058
APBW01000035
Gammaproteobacteria
Glaesserella parasuis 12939 [APBW]
29951
29877
-
Gln
TTG
[ENA]
¡û
>W141063059
APBW01000035
Gammaproteobacteria
Glaesserella parasuis 12939 [APBW]
29830
29756
-
Gln
TTG
[ENA]
¡û
>W141063101
APBX01000032
Gammaproteobacteria
Glaesserella parasuis 84-15995 [APBX]
17150
17076
-
Gln
TTG
[ENA]
¡û
>W141063131
APBY01000046
Gammaproteobacteria
Glaesserella parasuis H465 [APBY]
23878
23804
-
Gln
TTG
[ENA]
¡û
>W141063132
APBY01000046
Gammaproteobacteria
Glaesserella parasuis H465 [APBY]
23757
23683
-
Gln
TTG
[ENA]
¡û
>W141063179
APBZ01000029
Gammaproteobacteria
Glaesserella parasuis D74 [APBZ]
99690
99764
+
Gln
TTG
[ENA]
¡û
>W141063180
APBZ01000029
Gammaproteobacteria
Glaesserella parasuis D74 [APBZ]
99811
99885
+
Gln
TTG
[ENA]
¡û
>W08007784
ABKM01000031
Gammaproteobacteria
Glaesserella parasuis 29755 [ABKM]
9555
9629
+
Gln
TTG
[ENA]
¡û
>W08007785
ABKM01000031
Gammaproteobacteria
Glaesserella parasuis 29755 [ABKM]
9676
9750
+
Gln
TTG
[ENA]
¡û
>W141212527
AZQU01000048
Gammaproteobacteria
Glaesserella parasuis 84-17975 [AZQU]
17000
16926
-
Gln
TTG
[ENA]
¡û
>W141212528
AZQU01000048
Gammaproteobacteria
Glaesserella parasuis 84-17975 [AZQU]
16879
16805
-
Gln
TTG
[ENA]
¡û
>W141255231
CBTX010000148
Gammaproteobacteria
Glaesserella parasuis 29755 [CBTX]
16933
16859
-
Gln
TTG
[ENA]
¡û
>W141255232
CBTX010000148
Gammaproteobacteria
Glaesserella parasuis 29755 [CBTX]
16812
16738
-
Gln
TTG
[ENA]
¡û
>WENV183708913
PDWI01021364
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
437
363
-
Gln
TTG
[ENA]
¢þ
>WENV183708914
PDWI01021364
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
310
236
-
Gln
TTG
[ENA]
¢þ
>WENV183712395
PDWI01098451
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
215
289
+
Gln
TTG
[ENA]
¢þ
>W141400967
JDSN01000006
Gammaproteobacteria
Glaesserella parasuis HPS9 [JDSN]
16751
16677
-
Gln
TTG
[ENA]
¡û
>W141400968
JDSN01000006
Gammaproteobacteria
Glaesserella parasuis HPS9 [JDSN]
16630
16556
-
Gln
TTG
[ENA]
¡û
>W141401037
JDSO01000082
Gammaproteobacteria
Glaesserella parasuis HPS10 [JDSO]
8509
8583
+
Gln
TTG
[ENA]
¡û
>W141401038
JDSO01000082
Gammaproteobacteria
Glaesserella parasuis HPS10 [JDSO]
8630
8704
+
Gln
TTG
[ENA]
¡û
>W141401089
JDSP01000215
Gammaproteobacteria
Glaesserella parasuis HPS11 [JDSP]
5110
5184
+
Gln
TTG
[ENA]
¡û
>C181053357
CP021644
Gammaproteobacteria
Glaesserella parasuis 29755 [CP021644]
393667
393593
-
Gln
TTG
-
¡û
>C181053358
CP021644
Gammaproteobacteria
Glaesserella parasuis 29755 [CP021644]
393546
393472
-
Gln
TTG
-
¡û
>C181099524
CP024412
Gammaproteobacteria
Glaesserella parasuis SH0104 [CP024412]
259074
259148
+
Gln
TTG
-
¡û
>C181099525
CP024412
Gammaproteobacteria
Glaesserella parasuis SH0104 [CP024412]
259195
259269
+
Gln
TTG
-
¡û
>C191024013
CP023057
Gammaproteobacteria
Glaesserella sp. 15-184 [CP023057]
1487401
1487475
+
Gln
TTG
-
¡û
>C191024014
CP023057
Gammaproteobacteria
Glaesserella sp. 15-184 [CP023057]
1487524
1487598
+
Gln
TTG
-
¡û
>C191157914
CP038145
Gammaproteobacteria
Actinobacillus indolicus AIFJ1607 [CP038145]
1565320
1565394
+
Gln
TTG
-
¡û
>C191157915
CP038145
Gammaproteobacteria
Actinobacillus indolicus AIFJ1607 [CP038145]
1565441
1565515
+
Gln
TTG
-
¡û
>W141555727
JHQI01000007
Gammaproteobacteria
Glaesserella parasuis [JHQI]
81858
81784
-
Gln
TTG
[ENA]
¡û
>W141555728
JHQI01000007
Gammaproteobacteria
Glaesserella parasuis [JHQI]
81737
81663
-
Gln
TTG
[ENA]
¡û
>W141621401
JJNQ01000112
Gammaproteobacteria
Glaesserella parasuis ST4-1 [JJNQ]
16786
16712
-
Gln
TTG
[ENA]
¡û
>W141621402
JJNQ01000112
Gammaproteobacteria
Glaesserella parasuis ST4-1 [JJNQ]
16665
16591
-
Gln
TTG
[ENA]
¡û
>W141621455
JJNR01000126
Gammaproteobacteria
Glaesserella parasuis ST4-2 [JJNR]
8609
8683
+
Gln
TTG
[ENA]
¡û
>W141621456
JJNR01000126
Gammaproteobacteria
Glaesserella parasuis ST4-2 [JJNR]
8730
8804
+
Gln
TTG
[ENA]
¡û
>C09106674
CP001321
Gammaproteobacteria
Glaesserella parasuis SH0165 [CP001321]
1163318
1163244
-
Gln
TTG
[Ensembl]
¡û
>C09106675
CP001321
Gammaproteobacteria
Glaesserella parasuis SH0165 [CP001321]
1163197
1163123
-
Gln
TTG
[Ensembl]
¡û
>W1810304661
PTPX01000006
Gammaproteobacteria
Glaesserella australis HS4635 [PTPX]
120783
120709
-
Gln
TTG
[ENA]
¡û
>W1810304662
PTPX01000006
Gammaproteobacteria
Glaesserella australis HS4635 [PTPX]
120660
120586
-
Gln
TTG
[ENA]
¡û
>C151015363
CP006954
Gammaproteobacteria
Bibersteinia trehalosi USDA-ARS-USMARC-188 [CP006954]
476385
476311
-
Gln
TTG
[Ensembl]
¡û
>C151015420
CP006955
Gammaproteobacteria
Bibersteinia trehalosi USDA-ARS-USMARC-189 [CP006955]
520758
520684
-
Gln
TTG
[Ensembl]
¡û
>C151015455
CP006956
Gammaproteobacteria
Bibersteinia trehalosi USDA-ARS-USMARC-190 [CP006956]
1923989
1924063
+
Gln
TTG
[Ensembl]
¡û
>C151044922
CP009158
Gammaproteobacteria
Glaesserella parasuis SH03 [CP009158]
2245324
2245398
+
Gln
TTG
[Ensembl]
¡û
>C151044923
CP009158
Gammaproteobacteria
Glaesserella parasuis SH03 [CP009158]
2245445
2245519
+
Gln
TTG
[Ensembl]
¡û
>C151046272
CP009237
Gammaproteobacteria
Glaesserella parasuis KL0318 [CP009237]
1794108
1794034
-
Gln
TTG
[Ensembl]
¡û
>C151046273
CP009237
Gammaproteobacteria
Glaesserella parasuis KL0318 [CP009237]
1793987
1793913
-
Gln
TTG
[Ensembl]
¡û
>W1510077894
CDQL01000007
Gammaproteobacteria
Mannheimia massilioguelmaensis MG13 [CDQL]
317965
318039
+
Gln
TTG
[ENA]
¡û
>W1510077895
CDQL01000007
Gammaproteobacteria
Mannheimia massilioguelmaensis MG13 [CDQL]
318084
318158
+
Gln
TTG
[ENA]
¡û
>W1511480333
JWIZ01000022
Gammaproteobacteria
Muribacter muris Ackerman80-443D [JWIZ]
26575
26501
-
Gln
TTG
[ENA]
¡û
>W1511480334
JWIZ01000022
Gammaproteobacteria
Muribacter muris Ackerman80-443D [JWIZ]
26450
26376
-
Gln
TTG
[ENA]
¡û
>C161083101
CP015099
Gammaproteobacteria
Glaesserella parasuis SC1401 [CP015099]
1580240
1580166
-
Gln
TTG
[Ensembl]
¡û
>C161083102
CP015099
Gammaproteobacteria
Glaesserella parasuis SC1401 [CP015099]
1580119
1580045
-
Gln
TTG
[Ensembl]
¡û
>W121066964
AJSX01000030
Gammaproteobacteria
Pasteurella bettyae CCUG 2042 [AJSX]
143729
143803
+
Gln
TTG
[ENA]
¡û
>W121066965
AJSX01000030
Gammaproteobacteria
Pasteurella bettyae CCUG 2042 [AJSX]
143848
143922
+
Gln
TTG
[ENA]
¡û
>C131006031
CP003745
Gammaproteobacteria
Bibersteinia trehalosi USDA-ARS-USMARC-192 [CP003745]
1932680
1932754
+
Gln
TTG
[Ensembl]
¡û
>C131015171
CP005384
Gammaproteobacteria
Glaesserella parasuis ZJ0906 [CP005384]
151210
151284
+
Gln
TTG
[Ensembl]
¡û
>C131015172
CP005384
Gammaproteobacteria
Glaesserella parasuis ZJ0906 [CP005384]
151330
151404
+
Gln
TTG
[Ensembl]
¡û
>W1610516329
JACI01000002
Gammaproteobacteria
Bibersteinia trehalosi Y31 [JACI]
795152
795078
-
Gln
TTG
[ENA]
¡û
>W1710611671
JACI01000002
Gammaproteobacteria
Bibersteinia trehalosi Y31 [JACI]
795152
795078
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK