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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.340948 (91 seq.)
>W1711210229
LXIA01000017
Bacillota
Lentilactobacillus parabuchneri [LXIA]
71055
71128
+
Gln
CTG
[ENA]
¡û
>W1711224716
LXUG01000011
Bacillota
Lentilactobacillus parabuchneri [LXUG]
655779
655706
-
Gln
CTG
[ENA]
¡û
>W1711236370
LYDQ01000011
Bacillota
Lentilactobacillus parabuchneri [LYDQ]
605066
604993
-
Gln
CTG
[ENA]
¡û
>W131241941
BASH01000001
Bacillota
Lentilactobacillus otakiensis JCM 15040 [BASH]
572290
572217
-
Gln
CTG
[ENA]
¡û
>W1711438181
MIQE01000011
Bacillota
Lentilactobacillus sunkii [MIQE]
68065
68138
+
Gln
CTG
[ENA]
¡û
>W1711685915
MSAS01000001
Bacillota
Lentilactobacillus parabuchneri [MSAS]
50019
49946
-
Gln
CTG
[ENA]
¡û
>W1711685973
MSAT01000001
Bacillota
Lentilactobacillus parabuchneri [MSAT]
102526
102453
-
Gln
CTG
[ENA]
¡û
>W1711686085
MSAU01000028
Bacillota
Lentilactobacillus parabuchneri [MSAU]
215058
214985
-
Gln
CTG
[ENA]
¡û
>W1711686101
MSAV01000001
Bacillota
Lentilactobacillus parabuchneri [MSAV]
23936
23863
-
Gln
CTG
[ENA]
¡û
>W1711686147
MSAW01000001
Bacillota
Lentilactobacillus parabuchneri [MSAW]
17777
17704
-
Gln
CTG
[ENA]
¡û
>W1711686256
MSAX01000022
Bacillota
Lentilactobacillus parabuchneri [MSAX]
619480
619407
-
Gln
CTG
[ENA]
¡û
>W1711686262
MSAY01000001
Bacillota
Lentilactobacillus parabuchneri [MSAY]
47678
47605
-
Gln
CTG
[ENA]
¡û
>W1711686320
MSAZ01000001
Bacillota
Lentilactobacillus parabuchneri [MSAZ]
47678
47605
-
Gln
CTG
[ENA]
¡û
>W1711686378
MSBA01000001
Bacillota
Lentilactobacillus parabuchneri [MSBA]
47678
47605
-
Gln
CTG
[ENA]
¡û
>W1711686436
MSBB01000001
Bacillota
Lentilactobacillus parabuchneri [MSBB]
47678
47605
-
Gln
CTG
[ENA]
¡û
>W1711686545
MSBC01000021
Bacillota
Lentilactobacillus parabuchneri [MSBC]
619480
619407
-
Gln
CTG
[ENA]
¡û
>W1711686551
MSBD01000001
Bacillota
Lentilactobacillus parabuchneri [MSBD]
35970
35897
-
Gln
CTG
[ENA]
¡û
>W1711686621
MSBE01000001
Bacillota
Lentilactobacillus parabuchneri [MSBE]
26929
26856
-
Gln
CTG
[ENA]
¡û
>W1711686670
MSBF01000001
Bacillota
Lentilactobacillus parabuchneri [MSBF]
98080
98007
-
Gln
CTG
[ENA]
¡û
>W1711686727
MSBG01000001
Bacillota
Lentilactobacillus parabuchneri [MSBG]
98080
98007
-
Gln
CTG
[ENA]
¡û
>W1711686784
MSBH01000002
Bacillota
Lentilactobacillus parabuchneri [MSBH]
98080
98007
-
Gln
CTG
[ENA]
¡û
>W1711686893
MSBI01000019
Bacillota
Lentilactobacillus parabuchneri [MSBI]
209686
209613
-
Gln
CTG
[ENA]
¡û
>C171084064
CP018796
Bacillota
Lentilactobacillus parabuchneri FAM21731 [CP018796]
38831
38758
-
Gln
CTG
-
¡û
>WENV180477978
OBZA01000002
[OBZA] human gut metagenome; faeces
250143
250070
-
Gln
CTG
[ENA]
¢þ
>C181146861
CP027190
Bacillota
Lactobacillus sp. CBA3605 [CP027190]
652135
652062
-
Gln
CTG
-
¡û
>C181146920
CP027194
Bacillota
Lactobacillus sp. CBA3606 [CP027194]
921710
921637
-
Gln
CTG
-
¡û
>W1910177166
BJDO01000002
Bacillota
Secundilactobacillus hailunensis 887-11 [BJDO]
92976
93050
+
Gln
CTG
[ENA]
¡û
>W1910870905
NCWS01000059
Bacillota
Lentilactobacillus kefiri OG2 [NCWS]
941
868
-
Gln
CTG
[ENA]
¡û
>W1910871323
NCXA01000020
Bacillota
Lentilactobacillus parakefiri KR [NCXA]
17875
17801
-
Gln
CTG
[ENA]
¡û
>W1910871494
NCXD01000056
Bacillota
Lentilactobacillus kefiri KR [NCXD]
941
868
-
Gln
CTG
[ENA]
¡û
>W1910871714
NCXI01000004
Bacillota
Lentilactobacillus parakefiri OG2 [NCXI]
27504
27578
+
Gln
CTG
[ENA]
¡û
>W1910872051
NDFJ01000051
Bacillota
Lentilactobacillus kefiri Olga [NDFJ]
12745
12818
+
Gln
CTG
[ENA]
¡û
>W1911551320
OVSN01000007
Bacillota
Lentilactobacillus raoultii Marseille-P4006 [OVSN]
81260
81334
+
Gln
CTG
[ENA]
¡û
>W1911631829
PUFJ01000020
Bacillota
Secundilactobacillus silagei JCM 19001 DSM 27022 [PUFJ]
172362
172436
+
Gln
CTG
[ENA]
¡û
>W1911631967
PUFL01000071
Bacillota
Lentilactobacillus parakefiri DSM 10551 [PUFL]
27812
27886
+
Gln
CTG
[ENA]
¡û
>W1911632100
PUFO01000030
Bacillota
Secundilactobacillus malefermentans ATCC 49373 [PUFO]
22337
22263
-
Gln
CTG
[ENA]
¡û
>W1911632157
PUFP01000014
Bacillota
Lentilactobacillus buchneri ATCC 4005 [PUFP]
28660
28734
+
Gln
CTG
[ENA]
¡û
>W1911770067
QXIL01000001
Bacillota
Levilactobacillus suantsaii BCRC 12945 [QXIL]
32978
32904
-
Gln
CTG
[ENA]
¡û
>W1810586567
QFFL01000001
Bacillota
Lentilactobacillus kefiri SGL 13 [QFFL]
2366555
2366628
+
Gln
CTG
[ENA]
¡û
>C11112239
CP002652
Bacillota
Lentilactobacillus buchneri NRRL B-30929 [CP002652]
907466
907540
+
Gln
CTG
[Ensembl]
¡û
>W1511538808
JZCR01000025
Bacillota
Levilactobacillus spicheri LP38 [JZCR]
50827
50900
+
Gln
CTG
[ENA]
¡û
>W1511679305
LFEE01000024
Bacillota
Lactiplantibacillus herbarum TCF032-E4 [LFEE]
7492
7567
+
Gln
CTG
[ENA]
¡û
>W11184815
BACN01000080
Bacillota
Secundilactobacillus malefermentans KCTC 3548 [BACN]
21019
20944
-
Gln
CTG
[ENA]
¡û
>W121009534
AGEY01000197
Bacillota
Lentilactobacillus parafarraginis F0439 [AGEY]
98101
98174
+
Gln
CTG
[ENA]
¡û
>W121016915
AGRJ01000248
Bacillota
Lentilactobacillus kisonensis F0435 [AGRJ]
1538
1464
-
Gln
CTG
[ENA]
¡û
>W1610031455
AYYV01000047
Bacillota
Lentilactobacillus kefiri DSM 20587 = JCM 5818 [AYYV]
940
867
-
Gln
CTG
[ENA]
¡û
>W1610034115
AZDM01000017
Bacillota
Lentilactobacillus buchneri DSM 20057 [AZDM]
28149
28223
+
Gln
CTG
[ENA]
¡û
>W1610034539
AZDV01000003
Bacillota
Levilactobacillus acidifarinae DSM 19394 [AZDV]
17059
16986
-
Gln
CTG
[ENA]
¡û
>W1610034596
AZDW01000022
Bacillota
Levilactobacillus zymae DSM 19395 [AZDW]
36711
36638
-
Gln
CTG
[ENA]
¡û
>W1610034815
AZEA01000003
Bacillota
Lentilactobacillus sunkii DSM 19904 [AZEA]
152749
152676
-
Gln
CTG
[ENA]
¡û
>W1610034871
AZEB01000013
Bacillota
Lentilactobacillus kisonensis DSM 19906 = JCM 15041 [AZEB]
18459
18385
-
Gln
CTG
[ENA]
¡û
>W1610034969
AZED01000014
Bacillota
Lentilactobacillus otakiensis DSM 19908 = JCM 15040 [AZED]
68557
68630
+
Gln
CTG
[ENA]
¡û
>W1610035236
AZEI01000076
Bacillota
Lentilactobacillus rapi DSM 19907 = JCM 15042 [AZEI]
426188
426115
-
Gln
CTG
[ENA]
¡û
>W1610035489
AZEN01000363
Bacillota
Lentilactobacillus parakefiri DSM 10551 [AZEN]
27718
27792
+
Gln
CTG
[ENA]
¡û
>W1610036173
AZFC01000016
Bacillota
Levilactobacillus spicheri DSM 15429 [AZFC]
53580
53505
-
Gln
CTG
[ENA]
¡û
>W1610037384
AZFZ01000034
Bacillota
Lentilactobacillus parafarraginis DSM 18390 = JCM 14109 [AZFZ]
25754
25827
+
Gln
CTG
[ENA]
¡û
>W1610037885
AZGJ01000030
Bacillota
Secundilactobacillus malefermentans DSM 5705 = KCTC 3548 [AZGJ]
427
502
+
Gln
CTG
[ENA]
¡û
>W1610037924
AZGK01000001
Bacillota
Lentilactobacillus parabuchneri DSM 5707 = NBRC 107865 [AZGK]
71119
71192
+
Gln
CTG
[ENA]
¡û
>W1610044625
BBAR01000034
Bacillota
Lentilactobacillus parafarraginis DSM 18390 = JCM 14109 [BBAR]
25716
25789
+
Gln
CTG
[ENA]
¡û
>W1610044712
BBAT01000001
Bacillota
Lentilactobacillus otakiensis DSM 19908 = JCM 15040 [BBAT]
616828
616755
-
Gln
CTG
[ENA]
¡û
>W1610044755
BBAU01000013
Bacillota
Lentilactobacillus kisonensis DSM 19906 = JCM 15041 [BBAU]
49056
49130
+
Gln
CTG
[ENA]
¡û
>W1610044796
BBAV01000001
Bacillota
Lentilactobacillus rapi DSM 19907 = JCM 15042 [BBAV]
55100
55173
+
Gln
CTG
[ENA]
¡û
>W1610050018
BBFL01000002
Bacillota
Secundilactobacillus silagei JCM 19001 [BBFL]
80866
80792
-
Gln
CTG
[ENA]
¡û
>W1610073205
BCVT01000001
Bacillota
Lentilactobacillus parabuchneri DSM 5707 = NBRC 107865 [BCVT]
227091
227018
-
Gln
CTG
[ENA]
¡û
>C131001714
CP003043
Bacillota
Lentilactobacillus buchneri subsp. silagei CD034 [CP003043]
976467
976541
+
Gln
CTG
[Ensembl]
¡û
>W1610528577
JQBJ01000012
Bacillota
Lentilactobacillus parabuchneri [JQBJ]
306022
305949
-
Gln
CTG
[ENA]
¡û
>W1610997955
LXIA01000017
Bacillota
Lentilactobacillus parabuchneri [LXIA]
71055
71128
+
Gln
CTG
[ENA]
¡û
>W1611008680
LXUG01000011
Bacillota
Lentilactobacillus parabuchneri [LXUG]
655779
655706
-
Gln
CTG
[ENA]
¡û
>W1611014515
LYDQ01000011
Bacillota
Lentilactobacillus parabuchneri [LYDQ]
605066
604993
-
Gln
CTG
[ENA]
¡û
>W1710028382
AYYV01000047
Bacillota
Lentilactobacillus kefiri DSM 20587 = JCM 5818 [AYYV]
940
867
-
Gln
CTG
[ENA]
¡û
>W1710031242
AZDM01000017
Bacillota
Lentilactobacillus buchneri DSM 20057 [AZDM]
28149
28223
+
Gln
CTG
[ENA]
¡û
>W1710031666
AZDV01000003
Bacillota
Levilactobacillus acidifarinae DSM 19394 [AZDV]
17059
16986
-
Gln
CTG
[ENA]
¡û
>W1710031723
AZDW01000022
Bacillota
Levilactobacillus zymae DSM 19395 [AZDW]
36711
36638
-
Gln
CTG
[ENA]
¡û
>W1710031942
AZEA01000003
Bacillota
Lentilactobacillus sunkii DSM 19904 [AZEA]
152749
152676
-
Gln
CTG
[ENA]
¡û
>W1710031998
AZEB01000013
Bacillota
Lentilactobacillus kisonensis DSM 19906 = JCM 15041 [AZEB]
18459
18385
-
Gln
CTG
[ENA]
¡û
>W1710032096
AZED01000014
Bacillota
Lentilactobacillus otakiensis DSM 19908 = JCM 15040 [AZED]
68557
68630
+
Gln
CTG
[ENA]
¡û
>W1710032363
AZEI01000076
Bacillota
Lentilactobacillus rapi DSM 19907 = JCM 15042 [AZEI]
426188
426115
-
Gln
CTG
[ENA]
¡û
>W1710032528
AZEN01000363
Bacillota
Lentilactobacillus parakefiri DSM 10551 [AZEN]
27718
27792
+
Gln
CTG
[ENA]
¡û
>W1710033212
AZFC01000016
Bacillota
Levilactobacillus spicheri DSM 15429 [AZFC]
53580
53505
-
Gln
CTG
[ENA]
¡û
>W1710034423
AZFZ01000034
Bacillota
Lentilactobacillus parafarraginis DSM 18390 = JCM 14109 [AZFZ]
25754
25827
+
Gln
CTG
[ENA]
¡û
>W1710034924
AZGJ01000030
Bacillota
Secundilactobacillus malefermentans DSM 5705 = KCTC 3548 [AZGJ]
427
502
+
Gln
CTG
[ENA]
¡û
>W1710034963
AZGK01000001
Bacillota
Lentilactobacillus parabuchneri DSM 5707 = NBRC 107865 [AZGK]
71119
71192
+
Gln
CTG
[ENA]
¡û
>W1710041723
BBAR01000034
Bacillota
Lentilactobacillus parafarraginis DSM 18390 = JCM 14109 [BBAR]
25716
25789
+
Gln
CTG
[ENA]
¡û
>W1710041810
BBAT01000001
Bacillota
Lentilactobacillus otakiensis DSM 19908 = JCM 15040 [BBAT]
616828
616755
-
Gln
CTG
[ENA]
¡û
>W1710041853
BBAU01000013
Bacillota
Lentilactobacillus kisonensis DSM 19906 = JCM 15041 [BBAU]
49056
49130
+
Gln
CTG
[ENA]
¡û
>W1710041894
BBAV01000001
Bacillota
Lentilactobacillus rapi DSM 19907 = JCM 15042 [BBAV]
55100
55173
+
Gln
CTG
[ENA]
¡û
>W1710046417
BBFL01000002
Bacillota
Secundilactobacillus silagei JCM 19001 [BBFL]
80866
80792
-
Gln
CTG
[ENA]
¡û
>W1710058541
BCMG01000004
Bacillota
Secundilactobacillus silagei [BCMG]
171887
171961
+
Gln
CTG
[ENA]
¡û
>W1710070323
BCVT01000001
Bacillota
Lentilactobacillus parabuchneri DSM 5707 = NBRC 107865 [BCVT]
227091
227018
-
Gln
CTG
[ENA]
¡û
>W1710081730
BDGB01000053
Bacillota
Lentilactobacillus parakefiri [BDGB]
27813
27887
+
Gln
CTG
[ENA]
¡û
>W1710630167
JQBJ01000012
Bacillota
Lentilactobacillus parabuchneri [JQBJ]
306022
305949
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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