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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.340988 (61 seq.)
>W1711767438
MUZV01000004
Gammaproteobacteria
Cognaticolwellia aestuarii [MUZV]
67204
67278
+
Gln
TTG
[ENA]
¡û
>W1711767439
MUZV01000004
Gammaproteobacteria
Cognaticolwellia aestuarii [MUZV]
67348
67422
+
Gln
TTG
[ENA]
¡û
>W1711947412
NBOC01000001
Gammaproteobacteria
Colwellia chukchiensis [NBOC]
589249
589175
-
Gln
TTG
[ENA]
¡û
>W1711947413
NBOC01000001
Gammaproteobacteria
Colwellia chukchiensis [NBOC]
589106
589032
-
Gln
TTG
[ENA]
¡û
>W1711947495
NBOD01000005
Gammaproteobacteria
Cognaticolwellia aestuarii [NBOD]
67236
67310
+
Gln
TTG
[ENA]
¡û
>W1711947496
NBOD01000005
Gammaproteobacteria
Cognaticolwellia aestuarii [NBOD]
67380
67454
+
Gln
TTG
[ENA]
¡û
>W1711947550
NBOE01000002
Gammaproteobacteria
Colwellia polaris [NBOE]
519420
519346
-
Gln
TTG
[ENA]
¡û
>W1711947551
NBOE01000002
Gammaproteobacteria
Colwellia polaris [NBOE]
519274
519200
-
Gln
TTG
[ENA]
¡û
>W1711947651
NBOF01000003
Gammaproteobacteria
Cognaticolwellia mytili [NBOF]
558832
558758
-
Gln
TTG
[ENA]
¡û
>W1711947652
NBOF01000003
Gammaproteobacteria
Cognaticolwellia mytili [NBOF]
558688
558614
-
Gln
TTG
[ENA]
¡û
>W1711947704
NBOG01000002
Gammaproteobacteria
Cognaticolwellia sediminilitoris [NBOG]
387027
386953
-
Gln
TTG
[ENA]
¡û
>W1711947705
NBOG01000002
Gammaproteobacteria
Cognaticolwellia sediminilitoris [NBOG]
386883
386809
-
Gln
TTG
[ENA]
¡û
>C171034446
CP014943
Gammaproteobacteria
Colwellia sp. PAMC 21821 [CP014943]
615854
615928
+
Gln
TTG
-
¡û
>C171034447
CP014943
Gammaproteobacteria
Colwellia sp. PAMC 21821 [CP014943]
616000
616074
+
Gln
TTG
-
¡û
>C171108409
CP020465
Gammaproteobacteria
Cognaticolwellia beringensis NB097-1 [CP020465]
874014
873940
-
Gln
TTG
-
¡û
>C171108410
CP020465
Gammaproteobacteria
Cognaticolwellia beringensis NB097-1 [CP020465]
873868
873794
-
Gln
TTG
-
¡û
>WENV180042179
LNFX01002340
[LNFX] marine sediment metagenome; antarctic beach sand mud
1269
1343
+
Gln
TTG
[ENA]
¢þ
>WENV182543047
OJAZ01021303
[OJAZ] seawater metagenome; Sea water
198
124
-
Gln
TTG
[ENA]
¢þ
>WENV182543688
OJBC01000261
[OJBC] seawater metagenome; Sea water
23825
23899
+
Gln
TTG
[ENA]
¢þ
>WENV182557043
OJDI01000503
[OJDI] seawater metagenome; Sea water
15096
15170
+
Gln
TTG
[ENA]
¢þ
>WENV182558168
OJDL01009547
[OJDL] seawater metagenome; Sea water
418
344
-
Gln
TTG
[ENA]
¢þ
>WENV182565175
OJEH01000121
[OJEH] seawater metagenome; Sea water
199
125
-
Gln
TTG
[ENA]
¢þ
>WENV182565957
OJEI01003382
[OJEI] seawater metagenome; Sea water
418
344
-
Gln
TTG
[ENA]
¢þ
>WENV182566302
OJEJ01008619
[OJEJ] seawater metagenome; Sea water
792
866
+
Gln
TTG
[ENA]
¢þ
>WENV182574915
OJFS01007676
[OJFS] seawater metagenome; Sea water
1428
1502
+
Gln
TTG
[ENA]
¢þ
>WENV182574916
OJFS01007676
[OJFS] seawater metagenome; Sea water
1574
1648
+
Gln
TTG
[ENA]
¢þ
>WENV182575131
OJFU01000100
[OJFU] seawater metagenome; Sea water
23824
23898
+
Gln
TTG
[ENA]
¢þ
>WENV182577022
OJGC01000518
[OJGC] seawater metagenome; Sea water
9263
9337
+
Gln
TTG
[ENA]
¢þ
>WENV182577419
OJGE01005029
[OJGE] seawater metagenome; Sea water
716
790
+
Gln
TTG
[ENA]
¢þ
>WENV182577823
OJGJ01001668
[OJGJ] seawater metagenome; Sea water
291
365
+
Gln
TTG
[ENA]
¢þ
>WENV182577824
OJGJ01001668
[OJGJ] seawater metagenome; Sea water
432
506
+
Gln
TTG
[ENA]
¢þ
>WENV182580806
OJGW01014011
[OJGW] seawater metagenome; Sea water
1332
1406
+
Gln
TTG
[ENA]
¢þ
>WENV182580807
OJGW01014011
[OJGW] seawater metagenome; Sea water
1478
1552
+
Gln
TTG
[ENA]
¢þ
>WENV182581573
OJGX01014765
[OJGX] seawater metagenome; Sea water
1181
1255
+
Gln
TTG
[ENA]
¢þ
>WENV182581574
OJGX01014765
[OJGX] seawater metagenome; Sea water
1327
1401
+
Gln
TTG
[ENA]
¢þ
>WENV182584591
OJHG01002336
[OJHG] seawater metagenome; Sea water
204
130
-
Gln
TTG
[ENA]
¢þ
>WENV182588158
OJHO01009711
[OJHO] seawater metagenome; Sea water
199
125
-
Gln
TTG
[ENA]
¢þ
>WENV182592682
OJIR01009714
[OJIR] seawater metagenome; Sea water
1428
1502
+
Gln
TTG
[ENA]
¢þ
>WENV182592683
OJIR01009714
[OJIR] seawater metagenome; Sea water
1574
1648
+
Gln
TTG
[ENA]
¢þ
>WENV182593292
OJIT01026494
[OJIT] seawater metagenome; Sea water
359
433
+
Gln
TTG
[ENA]
¢þ
>WENV183057190
OLHK01011741
[OLHK] seawater metagenome; Sea water
1021
1095
+
Gln
TTG
[ENA]
¢þ
>WENV183058223
OLHN01025772
[OLHN] seawater metagenome; Sea water
564
490
-
Gln
TTG
[ENA]
¢þ
>WENV183058224
OLHN01025772
[OLHN] seawater metagenome; Sea water
418
344
-
Gln
TTG
[ENA]
¢þ
>WENV183059957
OLHW01000802
[OLHW] seawater metagenome; Sea water
2949
3023
+
Gln
TTG
[ENA]
¢þ
>WENV183522310
OMOM01002784
[OMOM] seawater metagenome; Sea water
117
191
+
Gln
TTG
[ENA]
¢þ
>WENV170305222
CESI01126566
[CESI] marine metagenome genome assembly TARA_082_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
184
110
-
Gln
TTG
[ENA]
¢þ
>WENV170780779
MAAB01021308
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
94
20
-
Gln
TTG
[ENA]
¢þ
>WENV170781313
MAAB01032184
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
1020
1094
+
Gln
TTG
[ENA]
¢þ
>WENV170783207
MAAC01014840
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
17994
18068
+
Gln
TTG
[ENA]
¢þ
>WENV170783208
MAAC01014840
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
18145
18219
+
Gln
TTG
[ENA]
¢þ
>WENV170783248
MAAC01015355
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
2108
2034
-
Gln
TTG
[ENA]
¢þ
>WENV170820413
MDSY01004256
[MDSY] marine metagenome; seawater
3450
3524
+
Gln
TTG
[ENA]
¢þ
>C181169976
CP028924
Gammaproteobacteria
Colwellia sp. Arc7-D [CP028924]
1152275
1152201
-
Gln
TTG
-
¡û
>C181169977
CP028924
Gammaproteobacteria
Colwellia sp. Arc7-D [CP028924]
1152129
1152055
-
Gln
TTG
-
¡û
>C191128393
CP034660
Gammaproteobacteria
Colwellia sp. Arc7-635 [CP034660]
1174024
1173950
-
Gln
TTG
-
¡û
>C191128394
CP034660
Gammaproteobacteria
Colwellia sp. Arc7-635 [CP034660]
1173878
1173804
-
Gln
TTG
-
¡û
>W1810887133
QUOU01000001
Gammaproteobacteria
Thalassotalea euphylliae H1 [QUOU]
1541419
1541345
-
Gln
TTG
[ENA]
¡û
>W1810887134
QUOU01000001
Gammaproteobacteria
Thalassotalea euphylliae H1 [QUOU]
1541283
1541209
-
Gln
TTG
[ENA]
¡û
>W1810887138
QUOU01000001
Gammaproteobacteria
Thalassotalea euphylliae H1 [QUOU]
1540633
1540559
-
Gln
TTG
[ENA]
¡û
>W1710545223
FOBI01000001
Gammaproteobacteria
Colwellia chukchiensis [FOBI]
189404
189478
+
Gln
TTG
[ENA]
¡û
>W1710545224
FOBI01000001
Gammaproteobacteria
Colwellia chukchiensis [FOBI]
189547
189621
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK