This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.341109 (89 seq.)
>W1710796692
LJSI01000023
Gammaproteobacteria
Neptunomonas antarctica [LJSI]
159913
159987
+
Gly
TCC
[ENA]
¡û
>W1711090565
LTAV01000007
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
57357
57283
-
Gly
TCC
[ENA]
¡û
>W1711090675
LTAW01000012
Gammaproteobacteria
Marinomonas atlantica [LTAW]
6576
6650
+
Gly
TCC
[ENA]
¡û
>W1711090746
LTAX01000028
Gammaproteobacteria
Marinomonas gallaica [LTAX]
30779
30705
-
Gly
TCC
[ENA]
¡û
>W1711128959
LUTR01000002
Gammaproteobacteria
Neptuniibacter marinus ATR 1.1 [LUTR]
234262
234188
-
Gly
TCC
[ENA]
¡û
>W1711129035
LUTS01000003
Gammaproteobacteria
Neptuniibacter pectenicola LFT 1.8 [LUTS]
112035
112109
+
Gly
TCC
[ENA]
¡û
>W131229295
AUGR01000027
Gammaproteobacteria
Neptunomonas japonica DSM 18939 [AUGR]
771
697
-
Gly
TCC
[ENA]
¡û
>W131235439
AULO01000014
Gammaproteobacteria
Marinospirillum minutulum DSM 6287 [AULO]
108604
108530
-
Gly
TCC
[ENA]
¡û
>WENV010766
AACY020291434
Marine microbial communities from Global Ocean Sampling (GOS)
712
636
-
Gly
TCC
[ENA]
>W1711666834
MRCI01000006
Gammaproteobacteria
Neptunomonas phycophila [MRCI]
434
360
-
Gly
TCC
[ENA]
¡û
>W1711666863
MRCJ01000006
Gammaproteobacteria
Neptunomonas phycophila [MRCJ]
311082
311156
+
Gly
TCC
[ENA]
¡û
>W1712081303
NHNK01000015
Gammaproteobacteria
Marinomonas agarivorans QM202 [NHNK]
60396
60322
-
Gly
TCC
[ENA]
¡û
>W131175728
ARJM01000047
Gammaproteobacteria
Marinobacterium rhizophilum DSM 18822 [ARJM]
136958
137032
+
Gly
TCC
[ENA]
¡û
>W131222109
AUAZ01000056
Gammaproteobacteria
Marinobacterium litorale DSM 23545 [AUAZ]
959
885
-
Gly
TCC
[ENA]
¡û
>C013008
CP000749
Gammaproteobacteria
Marinomonas sp. MWYL1 [CP000749]
4856140
4856066
-
Gly
TCC
[Ensembl]
¡û
>WENV180109213
OAPJ01030238
[OAPJ] marine metagenome; ENVO 00002150
109
35
-
Gly
TCC
[ENA]
¢þ
>WENV180209779
OBAL01021738
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
591
517
-
Gly
TCC
[ENA]
¢þ
>WENV180370342
OBOH01075862
[OBOH] marine metagenome; ENVO:00002010
137
63
-
Gly
TCC
[ENA]
¢þ
>W141055189
AONB01000013
Gammaproteobacteria
Nitrincola nitratireducens AK23 [AONB]
119872
119946
+
Gly
TCC
[ENA]
¡û
>W141191400
AYOZ01000010
Gammaproteobacteria
Marinomonas profundimaris D104 [AYOZ]
57462
57388
-
Gly
TCC
[ENA]
¡û
>WENV182540756
OJAP01004581
[OJAP] seawater metagenome; Sea water
258
332
+
Gly
TCC
[ENA]
¢þ
>WENV182541218
OJAS01007363
[OJAS] seawater metagenome; Sea water
181
255
+
Gly
TCC
[ENA]
¢þ
>WENV182556762
OJDH01000053
[OJDH] seawater metagenome; Sea water
50882
50808
-
Gly
TCC
[ENA]
¢þ
>WENV182590639
OJIJ01000971
[OJIJ] seawater metagenome; Sea water
1869
1795
-
Gly
TCC
[ENA]
¢þ
>WENV183057567
OLHL01010287
[OLHL] seawater metagenome; Sea water
874
948
+
Gly
TCC
[ENA]
¢þ
>WENV183719118
PDWJ01009865
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
451
377
-
Gly
TCC
[ENA]
¢þ
>WENV170015561
AZIH01005104
[AZIH] marine sediment metagenome; enrichment culture of sample MGS-ANC(UA) from oil contaminated site at the Ancona Port
288
214
-
Gly
TCC
[ENA]
¢þ
>WENV170015860
AZIJ01001928
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
299
225
-
Gly
TCC
[ENA]
¢þ
>WENV170016397
AZIK01002829
[AZIK] marine sediment metagenome; enrichment culture of sample MGS-ANC(AMM) from oil contaminated site at the Ancona Port
994
1068
+
Gly
TCC
[ENA]
¢þ
>WENV170112005
CEGC01000729
[CEGC] microbial mat metagenome; grass silage
1268
1194
-
Gly
TCC
[ENA]
¢þ
>WENV170112329
CEGE01001775
[CEGE] microbial mat metagenome; grass silage
275
201
-
Gly
TCC
[ENA]
¢þ
>WENV170210292
CEPV01182083
[CEPV] marine metagenome genome assembly TARA_039_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
741
815
+
Gly
TCC
[ENA]
¢þ
>WENV170214298
CEPX01076268
[CEPX] marine metagenome genome assembly TARA_037_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1548
1474
-
Gly
TCC
[ENA]
¢þ
>WENV170300289
CESG01111687
[CESG] marine metagenome genome assembly TARA_078_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
304
230
-
Gly
TCC
[ENA]
¢þ
>WENV170655534
JTFN01042464
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
356
282
-
Gly
TCC
[ENA]
¢þ
>WENV170655538
JTFN01042465
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
231
305
+
Gly
TCC
[ENA]
¢þ
>WENV170655974
JTFN01105461
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
374
300
-
Gly
TCC
[ENA]
¢þ
>WENV170656306
JTFO01009464
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
369
295
-
Gly
TCC
[ENA]
¢þ
>WENV170657396
JTFO01140437
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
27
101
+
Gly
TCC
[ENA]
¢þ
>WENV170688398
LFRM01242971
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
285
211
-
Gly
TCC
[ENA]
¢þ
>WENV170779299
LZQN01000246
[LZQN] oil field metagenome; sample BH-FW-7 from oil reservoir
557
631
+
Gly
TCC
[ENA]
¢þ
>WENV170781599
MAAB01038511
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
14378
14452
+
Gly
TCC
[ENA]
¢þ
>C191039807
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
3751338
3751264
-
Gly
TCC
-
¡û
>W141557735
JHVJ01000017
Gammaproteobacteria
Marinobacterium jannaschii DSM 6295 [JHVJ]
103638
103564
-
Gly
TCC
[ENA]
¡û
>W09106479
AAVH01000032
Gammaproteobacteria
Marinomonas sp. MWYL1 [AAVH]
2262
2336
+
Gly
TCC
[ENA]
¡û
>W141702967
JMLW01000001
Gammaproteobacteria
Marinospirillum insulare DSM 21763 [JMLW]
2386
2460
+
Gly
TCC
[ENA]
¡û
>W141712332
JMQN01000036
Gammaproteobacteria
Marinobacterium lacunae AK27 [JMQN]
466
392
-
Gly
TCC
[ENA]
¡û
>W141713646
JMSZ01000010
Gammaproteobacteria
Nitrincola lacisaponensis [JMSZ]
83137
83211
+
Gly
TCC
[ENA]
¡û
>W1910584846
JYBL01000026
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
20593
20667
+
Gly
TCC
[ENA]
¡û
>W1910914900
NHTT01000018
Gammaproteobacteria
Marinomonas sp. ef1 [NHTT]
57614
57540
-
Gly
TCC
[ENA]
¡û
>W1810400705
PYGI01000008
Gammaproteobacteria
Marinobacterium halophilum DSM 17586 [PYGI]
71087
71013
-
Gly
TCC
[ENA]
¡û
>W1810606251
QGOK01000024
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
19003
19077
+
Gly
TCC
[ENA]
¡û
>W1810625272
QHJF01000032
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
13186
13260
+
Gly
TCC
[ENA]
¡û
>W1810676284
QKLW01000013
Gammaproteobacteria
Marinomonas alcarazii CECT 7730 [QKLW]
11397
11471
+
Gly
TCC
[ENA]
¡û
>W1810679679
QKRA01000012
Gammaproteobacteria
Marinomonas piezotolerans YLB-05 [QKRA]
60416
60342
-
Gly
TCC
[ENA]
¡û
>W1810680817
QKRX01000015
Gammaproteobacteria
Nitrincola tibetensis xg18 [QKRX]
687
613
-
Gly
TCC
[ENA]
¡û
>W1810720360
QNRF01000011
Gammaproteobacteria
Marinomonas aquiplantarum CECT 7732 [QNRF]
63009
62935
-
Gly
TCC
[ENA]
¡û
>W1810721721
QNSE01000017
Gammaproteobacteria
Marinomonas rhizomae CECT 7377 [QNSE]
11528
11602
+
Gly
TCC
[ENA]
¡û
>W1810759723
QPJQ01000025
Gammaproteobacteria
Marinomonas foliarum CECT 7731 [QPJQ]
57419
57345
-
Gly
TCC
[ENA]
¡û
>W1810885380
QUNG01000016
Gammaproteobacteria
Marinomonas pollencensis CECT 7375 [QUNG]
7941
8015
+
Gly
TCC
[ENA]
¡û
>C11114637
CP002583
Gammaproteobacteria
Marinomonas mediterranea MMB-1 [CP002583]
234379
234453
+
Gly
TCC
[Ensembl]
¡û
>C11115031
CP002771
Gammaproteobacteria
Marinomonas posidonica IVIA-Po-181 [CP002771]
3700527
3700453
-
Gly
TCC
[Ensembl]
¡û
>W1510741320
CYHG01000004
Gammaproteobacteria
Marinomonas fungiae JCM 18476 [CYHG]
299983
300057
+
Gly
TCC
[ENA]
¡û
>W1511349200
JRLB01000110
Gammaproteobacteria
Nitrincola sp. A-D6 [JRLB]
16927
16853
-
Gly
TCC
[ENA]
¡û
>W11170384
AFPL01000004
Gammaproteobacteria
Marinobacterium stanieri S30 [AFPL]
86739
86813
+
Gly
TCC
[ENA]
¡û
>C161091180
CP015839
Gammaproteobacteria
Marinobacterium aestuarii ST58-10 [CP015839]
4901168
4901094
-
Gly
TCC
[Ensembl]
¡û
>W1610062699
BCNS01000100
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
103618
103544
-
Gly
TCC
[ENA]
¡û
>W1610503740
FLOB01000016
Gammaproteobacteria
Marinomonas spartinae [FLOB]
71463
71389
-
Gly
TCC
[ENA]
¡û
>W1610503777
FLOC01000006
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
123924
123998
+
Gly
TCC
[ENA]
¡û
>W1610504004
FLOE01000007
Gammaproteobacteria
Marinomonas spartinae CECT 8887 [FLOE]
10482
10556
+
Gly
TCC
[ENA]
¡û
>W1610506647
FLRA01000019
Gammaproteobacteria
Marinomonas gallaica CECT 5115 [FLRA]
6399
6473
+
Gly
TCC
[ENA]
¡û
>W1610506714
FLRB01000003
Gammaproteobacteria
Marinomonas gallaica CECT 5116 [FLRB]
6399
6473
+
Gly
TCC
[ENA]
¡û
>W1610540070
JSEE01000019
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
60380
60306
-
Gly
TCC
[ENA]
¡û
>W1610632885
LIQF01000004
Gammaproteobacteria
Marinomonas fungiae [LIQF]
299983
300057
+
Gly
TCC
[ENA]
¡û
>W1610660649
LJSI01000023
Gammaproteobacteria
Neptunomonas antarctica [LJSI]
159913
159987
+
Gly
TCC
[ENA]
¡û
>W1610924805
LTAV01000007
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
57357
57283
-
Gly
TCC
[ENA]
¡û
>W1610924915
LTAW01000012
Gammaproteobacteria
Marinomonas atlantica [LTAW]
6576
6650
+
Gly
TCC
[ENA]
¡û
>W1610924986
LTAX01000028
Gammaproteobacteria
Marinomonas gallaica [LTAX]
30779
30705
-
Gly
TCC
[ENA]
¡û
>W1610940032
LUTR01000002
Gammaproteobacteria
Neptuniibacter marinus ATR 1.1 [LUTR]
234262
234188
-
Gly
TCC
[ENA]
¡û
>W1610940108
LUTS01000003
Gammaproteobacteria
Neptuniibacter pectenicola LFT 1.8 [LUTS]
112035
112109
+
Gly
TCC
[ENA]
¡û
>W1710060175
BCNS01000100
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
103618
103544
-
Gly
TCC
[ENA]
¡û
>W1710496569
FLOB01000016
Gammaproteobacteria
Marinomonas spartinae [FLOB]
71463
71389
-
Gly
TCC
[ENA]
¡û
>W1710496606
FLOC01000006
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
123924
123998
+
Gly
TCC
[ENA]
¡û
>W1710533760
FNRJ01000007
Gammaproteobacteria
Marinobacterium iners DSM 11526 [FNRJ]
93507
93581
+
Gly
TCC
[ENA]
¡û
>W1710539750
FNVQ01000004
Gammaproteobacteria
Marinobacterium lutimaris [FNVQ]
303960
303886
-
Gly
TCC
[ENA]
¡û
>W1710583993
FQVF01000025
Gammaproteobacteria
Marinomonas polaris DSM 16579 [FQVF]
57737
57663
-
Gly
TCC
[ENA]
¡û
>W1710596405
FTMN01000009
Gammaproteobacteria
Marinobacterium stanieri [FTMN]
131860
131786
-
Gly
TCC
[ENA]
¡û
>W1710643091
JSEE01000019
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
60380
60306
-
Gly
TCC
[ENA]
¡û
>W1710767317
LIQF01000004
Gammaproteobacteria
Marinomonas fungiae [LIQF]
299983
300057
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK