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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.341598 (84 seq.)
>W131066913
ANPJ01000004
Bacteroidota
Dokdonia sp. PRO95 [ANPJ]
5786
5860
+
Gly
GCC
[ENA]
¡û
>C171059727
CP017260
Bacteroidota
Formosa sp. Hel1_33_131 [CP017260]
1114795
1114723
-
Gly
GCC
-
¡û
>w013022
AAMZ01000002
Bacteroidota
Dokdonia sp. MED134 MED134 [AAMZ]
15262
15336
+
Gly
GCC
[ENA]
¡û
>WENV180109121
OAPJ01009863
[OAPJ] marine metagenome; ENVO 00002150
358
430
+
Gly
GCC
[ENA]
¢þ
>WENV180113227
OAPQ01012408
[OAPQ] marine metagenome; ENVO: 00002149
564
492
-
Gly
GCC
[ENA]
¢þ
>WENV180383442
OBOU01088041
[OBOU] marine metagenome; ENV:00002010
246
174
-
Gly
GCC
[ENA]
¢þ
>WENV180383987
OBOV01123505
[OBOV] marine metagenome; ENV:00002010
247
175
-
Gly
GCC
[ENA]
¢þ
>WENV180396494
OBPV01009452
[OBPV] marine metagenome; ENVO:00002010
656
728
+
Gly
GCC
[ENA]
¢þ
>WENV180397725
OBPZ01001227
[OBPZ] marine metagenome; ENVO:00002010
1261
1333
+
Gly
GCC
[ENA]
¢þ
>WENV180399417
OBQH01020103
[OBQH] marine metagenome; ENV:00002010
167
95
-
Gly
GCC
[ENA]
¢þ
>WENV180399887
OBQO01066411
[OBQO] marine metagenome; ENVO:00002010
34
106
+
Gly
GCC
[ENA]
¢þ
>WENV181322103
OFKP01006396
[OFKP] marine metagenome; sea ice
634
706
+
Gly
GCC
[ENA]
¢þ
>WENV181325458
OFLJ01000912
[OFLJ] seawater metagenome; seawater
3498
3570
+
Gly
GCC
[ENA]
¢þ
>WENV182540346
OJAH01003286
[OJAH] seawater metagenome; Sea water
585
513
-
Gly
GCC
[ENA]
¢þ
>WENV182540963
OJAQ01000878
[OJAQ] seawater metagenome; Sea water
3475
3547
+
Gly
GCC
[ENA]
¢þ
>WENV182541031
OJAQ01003254
[OJAQ] seawater metagenome; Sea water
114
42
-
Gly
GCC
[ENA]
¢þ
>WENV182541415
OJAT01007791
[OJAT] seawater metagenome; Sea water
681
753
+
Gly
GCC
[ENA]
¢þ
>WENV182545012
OJBL01002638
[OJBL] seawater metagenome; Sea water
597
669
+
Gly
GCC
[ENA]
¢þ
>WENV182546835
OJBP01007061
[OJBP] seawater metagenome; Sea water
856
784
-
Gly
GCC
[ENA]
¢þ
>WENV182548464
OJBW01000328
[OJBW] seawater metagenome; Sea water
3669
3741
+
Gly
GCC
[ENA]
¢þ
>WENV182553948
OJCR01063720
[OJCR] seawater metagenome; Sea water
115
187
+
Gly
GCC
[ENA]
¢þ
>WENV182555198
OJCY01009621
[OJCY] seawater metagenome; Sea water
99
27
-
Gly
GCC
[ENA]
¢þ
>WENV182556653
OJDG01030192
[OJDG] seawater metagenome; Sea water
297
225
-
Gly
GCC
[ENA]
¢þ
>WENV182557837
OJDL01000127
[OJDL] seawater metagenome; Sea water
13176
13104
-
Gly
GCC
[ENA]
¢þ
>WENV182558443
OJDM01002941
[OJDM] seawater metagenome; Sea water
1171
1243
+
Gly
GCC
[ENA]
¢þ
>WENV182561746
OJDX01001675
[OJDX] seawater metagenome; Sea water
333
261
-
Gly
GCC
[ENA]
¢þ
>WENV182561953
OJDY01000301
[OJDY] seawater metagenome; Sea water
467
395
-
Gly
GCC
[ENA]
¢þ
>WENV182562695
OJEA01000183
[OJEA] seawater metagenome; Sea water
6747
6675
-
Gly
GCC
[ENA]
¢þ
>WENV182563092
OJEB01000151
[OJEB] seawater metagenome; Sea water
5796
5724
-
Gly
GCC
[ENA]
¢þ
>WENV182564204
OJEE01000609
[OJEE] seawater metagenome; Sea water
2955
2883
-
Gly
GCC
[ENA]
¢þ
>WENV182564431
OJEF01000100
[OJEF] seawater metagenome; Sea water
5283
5211
-
Gly
GCC
[ENA]
¢þ
>WENV182569062
OJEY01000257
[OJEY] seawater metagenome; Sea water
7679
7751
+
Gly
GCC
[ENA]
¢þ
>WENV182569760
OJFB01000353
[OJFB] seawater metagenome; Sea water
721
793
+
Gly
GCC
[ENA]
¢þ
>WENV182573665
OJFP01010749
[OJFP] seawater metagenome; Sea water
198
126
-
Gly
GCC
[ENA]
¢þ
>WENV182574888
OJFS01005544
[OJFS] seawater metagenome; Sea water
497
425
-
Gly
GCC
[ENA]
¢þ
>WENV182575802
OJFW01002176
[OJFW] seawater metagenome; Sea water
689
617
-
Gly
GCC
[ENA]
¢þ
>WENV182576606
OJFY01000465
[OJFY] seawater metagenome; Sea water
2727
2799
+
Gly
GCC
[ENA]
¢þ
>WENV182578101
OJGM01001918
[OJGM] seawater metagenome; Sea water
1393
1321
-
Gly
GCC
[ENA]
¢þ
>WENV182582131
OJHA01000201
[OJHA] seawater metagenome; Sea water
988
916
-
Gly
GCC
[ENA]
¢þ
>WENV182582545
OJHB01001180
[OJHB] seawater metagenome; Sea water
2971
3043
+
Gly
GCC
[ENA]
¢þ
>WENV182583246
OJHD01001463
[OJHD] seawater metagenome; Sea water
1972
1900
-
Gly
GCC
[ENA]
¢þ
>WENV182587584
OJHN01000174
[OJHN] seawater metagenome; Sea water
7827
7755
-
Gly
GCC
[ENA]
¢þ
>WENV182588433
OJHT01002252
[OJHT] seawater metagenome; Sea water
720
792
+
Gly
GCC
[ENA]
¢þ
>WENV182590499
OJII01008006
[OJII] seawater metagenome; Sea water
555
627
+
Gly
GCC
[ENA]
¢þ
>WENV182590841
OJIK01001345
[OJIK] seawater metagenome; Sea water
284
212
-
Gly
GCC
[ENA]
¢þ
>WENV182592669
OJIR01009082
[OJIR] seawater metagenome; Sea water
234
162
-
Gly
GCC
[ENA]
¢þ
>WENV182594033
OJIV01000098
[OJIV] seawater metagenome; Sea water
15320
15248
-
Gly
GCC
[ENA]
¢þ
>WENV183054584
OLGU01000204
[OLGU] seawater metagenome; Sea water
15507
15435
-
Gly
GCC
[ENA]
¢þ
>WENV183058946
OLHR01042465
[OLHR] seawater metagenome; Sea water
415
487
+
Gly
GCC
[ENA]
¢þ
>WENV183059045
OLHS01001761
[OLHS] seawater metagenome; Sea water
1529
1601
+
Gly
GCC
[ENA]
¢þ
>WENV183059300
OLHU01000496
[OLHU] seawater metagenome; Sea water
1449
1521
+
Gly
GCC
[ENA]
¢þ
>WENV183060365
OLHX01005277
[OLHX] seawater metagenome; Sea water
1089
1017
-
Gly
GCC
[ENA]
¢þ
>WENV183061181
OLHZ01000672
[OLHZ] seawater metagenome; Sea water
328
400
+
Gly
GCC
[ENA]
¢þ
>WENV183616120
OOEC01080365
[OOEC] marine metagenome; sea ice
58
130
+
Gly
GCC
[ENA]
¢þ
>WENV183619316
OOFQ01001007
[OOFQ] marine metagenome; seawater
3498
3570
+
Gly
GCC
[ENA]
¢þ
>WENV183620628
OOFS01006922
[OOFS] marine metagenome; sea ice
872
800
-
Gly
GCC
[ENA]
¢þ
>WENV183625241
OOGF01006528
[OOGF] marine metagenome; seawater
275
203
-
Gly
GCC
[ENA]
¢þ
>WENV183625726
OOGG01014619
[OOGG] marine metagenome; sea ice
60
132
+
Gly
GCC
[ENA]
¢þ
>WENV183628379
OOGN01026697
[OOGN] marine metagenome; sea ice
197
269
+
Gly
GCC
[ENA]
¢þ
>WENV183628796
OOGO01026422
[OOGO] marine metagenome; sea ice
310
382
+
Gly
GCC
[ENA]
¢þ
>WENV183631348
OOGU01085861
[OOGU] marine metagenome; sea ice
116
44
-
Gly
GCC
[ENA]
¢þ
>WENV170274429
CERM01017212
[CERM] marine metagenome genome assembly TARA_067_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
185
113
-
Gly
GCC
[ENA]
¢þ
>WENV170305442
CESI01146166
[CESI] marine metagenome genome assembly TARA_082_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
885
811
-
Gly
GCC
[ENA]
¢þ
>WENV170314565
CESO01008855
[CESO] marine metagenome genome assembly TARA_093_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
144
72
-
Gly
GCC
[ENA]
¢þ
>WENV170537476
CEWR01009261
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
30794
30720
-
Gly
GCC
[ENA]
¢þ
>WENV170783406
MAAC01016649
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
12616
12542
-
Gly
GCC
[ENA]
¢þ
>WENV170816890
MDSX01039691
[MDSX] marine metagenome; seawater
6081
6153
+
Gly
GCC
[ENA]
¢þ
>WENV170826713
MDSY01115512
[MDSY] marine metagenome; seawater
31894
31966
+
Gly
GCC
[ENA]
¢þ
>WENV170949121
MEHZ011361387
[MEHZ] marine metagenome; marine surface water
458
530
+
Gly
GCC
[ENA]
¢þ
>C181113368
CP025118
Bacteroidota
Lacinutrix sp. Bg11-31 [CP025118]
3347381
3347453
+
Gly
GCC
-
¡û
>C181175195
CP029151
Bacteroidota
Dokdonia sp. Dokd-P16 [CP029151]
1777062
1776990
-
Gly
GCC
-
¡û
>W1910785737
MQVW01000027
Bacteroidota
Nonlabens xylanidelens DSM 16809 [MQVW]
19947
19875
-
Gly
GCC
[ENA]
¡û
>W1810296282
PTJE01000001
Bacteroidota
Nonlabens xylanidelens DSM 16809 [PTJE]
384033
383961
-
Gly
GCC
[ENA]
¡û
>W1810685948
QKZR01000001
Bacteroidota
Nonlabens dokdonensis DSM 17205 [QKZR]
1137861
1137789
-
Gly
GCC
[ENA]
¡û
>C151048565
CP009301
Bacteroidota
Dokdonia sp. MED134 [CP009301]
1661044
1661118
+
Gly
GCC
[Ensembl]
¡û
>C11111596
CP002528
Bacteroidota
Dokdonia sp. 4H-3-7-5 [CP002528]
907370
907444
+
Gly
GCC
[Ensembl]
¡û
>W1511360728
JSAQ01000001
Bacteroidota
Dokdonia donghaensis DSW-1 [JSAQ]
1567647
1567721
+
Gly
GCC
[ENA]
¡û
>C161083508
CP015125
Bacteroidota
Dokdonia donghaensis DSW-1 [CP015125]
320787
320861
+
Gly
GCC
-
¡û
>C131001114
CP001397
Bacteroidota
Nonlabens dokdonensis DSW-6 [CP001397]
1358497
1358423
-
Gly
GCC
[Ensembl]
¡û
>W1610632930
LIQG01000024
Bacteroidota
Lacinutrix mariniflava [LIQG]
24587
24515
-
Gly
GCC
[ENA]
¡û
>W1610632976
LIQH01000029
Bacteroidota
Lacinutrix algicola [LIQH]
39143
39215
+
Gly
GCC
[ENA]
¡û
>W1710543540
FOAB01000003
Bacteroidota
Aquimarina amphilecti [FOAB]
395429
395357
-
Gly
GCC
[ENA]
¡û
>W1710767362
LIQG01000024
Bacteroidota
Lacinutrix mariniflava [LIQG]
24587
24515
-
Gly
GCC
[ENA]
¡û
>W1710767408
LIQH01000029
Bacteroidota
Lacinutrix algicola [LIQH]
39143
39215
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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