This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.341772 (41 seq.)
>C171127310
CP021987
Mycoplasmatota
Ureaplasma parvum hebnu3h04 [CP021987]
83702
83628
-
Lys
TTT
-
¡û
>C171127319
CP021988
Mycoplasmatota
Ureaplasma parvum hebnu3h05 [CP021988]
644326
644400
+
Lys
TTT
-
¡û
>C171127363
CP021989
Mycoplasmatota
Ureaplasma parvum hebnu3h07 [CP021989]
196592
196518
-
Lys
TTT
-
¡û
>C171127372
CP021990
Mycoplasmatota
Ureaplasma parvum hebnu1229 [CP021990]
696906
696980
+
Lys
TTT
-
¡û
>C171127398
CP021991
Mycoplasmatota
Ureaplasma parvum hebnu uu3 [CP021991]
436575
436649
+
Lys
TTT
-
¡û
>C026063
AF222894
Mycoplasmatota
Ureaplasma parvum [AF222894]
349705
349779
+
Lys
TTT
[Ensembl]
¡û
>w025455
AAZT01000002
Mycoplasmatota
Ureaplasma urealyticum serovar 12 [AAZT]
84110
84186
+
Lys
TTT
[ENA]
¡û
>w025427
AAZS01000003
Mycoplasmatota
Ureaplasma urealyticum serovar 11 [AAZS]
96462
96386
-
Lys
TTT
[ENA]
¡û
>w025401
AAZR01000010
Mycoplasmatota
Ureaplasma urealyticum serovar 5 [AAZR]
5829
5905
+
Lys
TTT
[ENA]
¡û
>w025370
AAZQ01000001
Mycoplasmatota
Ureaplasma parvum serovar 6 [AAZQ]
577358
577282
-
Lys
TTT
[ENA]
¡û
>w024363
AAYQ01000055
Mycoplasmatota
Ureaplasma urealyticum serovar 9 [AAYQ]
181
105
-
Lys
TTT
[ENA]
¡û
>w024338
AAYQ01000010
Mycoplasmatota
Ureaplasma urealyticum serovar 9 [AAYQ]
36993
36917
-
Lys
TTT
[ENA]
¡û
>w024328
AAYP01000002
Mycoplasmatota
Ureaplasma urealyticum serovar 7 [AAYP]
203332
203408
+
Lys
TTT
[ENA]
¡û
>w024302
AAYO01000008
Mycoplasmatota
Ureaplasma urealyticum serovar 4 [AAYO]
38631
38707
+
Lys
TTT
[ENA]
¡û
>w024269
AAYN01000002
Mycoplasmatota
Ureaplasma urealyticum serovar 8 [AAYN]
109543
109467
-
Lys
TTT
[ENA]
¡û
>w024245
AAYM01000004
Mycoplasmatota
Ureaplasma parvum serovar 3 [AAYM]
47345
47421
+
Lys
TTT
[ENA]
¡û
>WENV180225689
OBBO01000018
[OBBO] human gut metagenome; Infant 2 DOL 5 gut
88017
87943
-
Lys
TTT
[ENA]
¢þ
>WENV180554062
OCJL01005547
[OCJL] human gut metagenome; Infant 2 DOL 7 gut
196
122
-
Lys
TTT
[ENA]
¢þ
>WENV180554103
OCJM01000079
[OCJM] human gut metagenome; Infant 2 DOL 6 gut
351
277
-
Lys
TTT
[ENA]
¢þ
>WENV180822786
ODJV01002847
[ODJV] human metagenome; G_DNA_Posterior fornix
282
208
-
Lys
TTT
[ENA]
¢þ
>W08002243
ABER01000002
Mycoplasmatota
Ureaplasma parvum serovar 14 str. ATCC 33697 [ABER]
203919
203993
+
Lys
TTT
[ENA]
¡û
>W08002252
ABES01000001
Mycoplasmatota
Ureaplasma parvum serovar 1 str. ATCC 27813 [ABES]
650700
650774
+
Lys
TTT
[ENA]
¡û
>W08002297
ABET01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 10 [ABET]
96882
96811
-
Lys
TTT
[ENA]
¡û
>W08002324
ABEV01000003
Mycoplasmatota
Ureaplasma urealyticum serovar 13 str. ATCC 33698 [ABEV]
37374
37303
-
Lys
TTT
[ENA]
¡û
>W08002827
ABFL01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 2 [ABFL]
86429
86358
-
Lys
TTT
[ENA]
¡û
>C08011088
CP000942
Mycoplasmatota
Ureaplasma parvum serovar 3 str. ATCC 27815 [CP000942]
349744
349818
+
Lys
TTT
[Ensembl]
¡û
>W141455539
JFDP01000023
Mycoplasmatota
Ureaplasma diversum NCTC 246 [JFDP]
10492
10418
-
Lys
TTT
[ENA]
¡û
>C191003507
AP018561
Mycoplasmatota
Ureaplasma parvum serovar 3 OMC-P162 [AP018561]
168715
168789
+
Lys
TTT
-
¡û
>C09110773
CP001184
Mycoplasmatota
Ureaplasma urealyticum serovar 10 str. ATCC 33699 [CP001184]
347714
347788
+
Lys
TTT
[Ensembl]
¡û
>W1911824656
QZWO01000036
Mycoplasmatota
Ureaplasma urealyticum 445 [QZWO]
2174
2100
-
Lys
TTT
[ENA]
¡û
>W1810735660
QOKT01000006
Mycoplasmatota
Ureaplasma urealyticum 1000 [QOKT]
174313
174387
+
Lys
TTT
[ENA]
¡û
>W1810735686
QOKU01000055
Mycoplasmatota
Ureaplasma urealyticum 1051 [QOKU]
6153
6227
+
Lys
TTT
[ENA]
¡û
>W1810757236
QPHI01000041
Mycoplasmatota
Ureaplasma parvum 445a [QPHI]
9871
9945
+
Lys
TTT
[ENA]
¡û
>W1810757262
QPHJ01000049
Mycoplasmatota
Ureaplasma urealyticum 1000a [QPHJ]
9965
10039
+
Lys
TTT
[ENA]
¡û
>W1810757288
QPHK01000073
Mycoplasmatota
Ureaplasma parvum 1051a [QPHK]
9893
9967
+
Lys
TTT
[ENA]
¡û
>C151002397
AP014584
Mycoplasmatota
Ureaplasma parvum serovar 3 SV3F4 [AP014584]
576714
576640
-
Lys
TTT
[Ensembl]
¡û
>C161022161
CP009770
Mycoplasmatota
Ureaplasma diversum ATCC 49782 [CP009770]
81439
81513
+
Lys
TTT
-
¡û
>W121060669
AJFX01000013
Mycoplasmatota
Ureaplasma urealyticum 2033 [AJFX]
66139
66065
-
Lys
TTT
[ENA]
¡û
>W121060674
AJFY01000003
Mycoplasmatota
Ureaplasma urealyticum 2608 [AJFY]
96702
96628
-
Lys
TTT
[ENA]
¡û
>W121060722
AJFZ01000009
Mycoplasmatota
Ureaplasma urealyticum 4155 [AJFZ]
106043
105969
-
Lys
TTT
[ENA]
¡û
>W121060749
AJGA01000012
Mycoplasmatota
Ureaplasma urealyticum 4318 [AJGA]
66138
66064
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK