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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.341777 (137 seq.)
>W1710797364
LJSZ01000045
Bacillota
Clostridium sporogenes [LJSZ]
99686
99612
-
Glu
TTC
[ENA]
¡û
>W1710797371
LJSZ01000045
Bacillota
Clostridium sporogenes [LJSZ]
99037
98963
-
Glu
TTC
[ENA]
¡û
>W1711066900
LSDI01000060
Bacillota
Peptostreptococcus anaerobius [LSDI]
182
254
+
Glu
TTC
[ENA]
¡û
>W131231040
AUID01000037
Bacillota
Proteocatella sphenisci DSM 23131 [AUID]
947
873
-
Glu
TTC
[ENA]
¡û
>W131231051
AUID01000042
Bacillota
Proteocatella sphenisci DSM 23131 [AUID]
3698
3624
-
Glu
TTC
[ENA]
¡û
>C000799
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
1842736
1842810
+
Glu
TTC
[Ensembl]
¡û
>C000812
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4894664
4894590
-
Glu
TTC
[Ensembl]
¡û
>C000813
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4453403
4453329
-
Glu
TTC
[Ensembl]
¡û
>C000826
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4446810
4446736
-
Glu
TTC
[Ensembl]
¡û
>C000846
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4438099
4438025
-
Glu
TTC
[Ensembl]
¡û
>C000870
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4430358
4430284
-
Glu
TTC
[Ensembl]
¡û
>w017066
AAQV01000074
Bacillota
Alkaliphilus oremlandii OhILAs [AAQV]
1879
1803
-
Glu
TTC
[ENA]
¡û
>w017040
AAQV01000071
Bacillota
Alkaliphilus oremlandii OhILAs [AAQV]
3075
2999
-
Glu
TTC
[ENA]
¡û
>w017030
AAQV01000054
Bacillota
Alkaliphilus oremlandii OhILAs [AAQV]
7261
7185
-
Glu
TTC
[ENA]
¡û
>w017000
AAQV01000003
Bacillota
Alkaliphilus oremlandii OhILAs [AAQV]
106403
106327
-
Glu
TTC
[ENA]
¡û
>w010470
AAKU01000254
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
1220
1149
-
Glu
TTC
[ENA]
¡û
>w010440
AAKU01000209
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
892
968
+
Glu
TTC
[ENA]
¡û
>w010420
AAKU01000148
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
4684
4758
+
Glu
TTC
[ENA]
¡û
>w010397
AAKU01000026
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
1242
1316
+
Glu
TTC
[ENA]
¡û
>w010381
AAKU01000002
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
1283
1357
+
Glu
TTC
[ENA]
¡û
>WENV180150826
OAUN01046418
[OAUN] human gut metagenome; faeces
50
124
+
Glu
TTC
[ENA]
¢þ
>WENV180193834
OAZW01018584
[OAZW] human gut metagenome; faeces
195
267
+
Glu
TTC
[ENA]
¢þ
>WENV180205884
OBAH01180004
[OBAH] human gut metagenome; human gut
92
166
+
Glu
TTC
[ENA]
¢þ
>WENV180290461
OBIU01024270
[OBIU] human gut metagenome; human gut
637
563
-
Glu
TTC
[ENA]
¢þ
>WENV180337885
OBLG01173372
[OBLG] human gut metagenome; human gut
60
134
+
Glu
TTC
[ENA]
¢þ
>WENV180491735
OBZV01068953
[OBZV] human gut metagenome; faeces
75
1
-
Glu
TTC
[ENA]
¢þ
>WENV180613431
OCPX01101267
[OCPX] human gut metagenome; human gut
265
191
-
Glu
TTC
[ENA]
¢þ
>WENV180783479
ODIQ01007859
[ODIQ] human metagenome; G_DNA_Tongue dorsum
2343
2416
+
Glu
TTC
[ENA]
¢þ
>WENV180783911
ODIQ01046713
[ODIQ] human metagenome; G_DNA_Tongue dorsum
342
415
+
Glu
TTC
[ENA]
¢þ
>WENV180826902
ODJZ01078806
[ODJZ] human metagenome; G_DNA_Stool
190
264
+
Glu
TTC
[ENA]
¢þ
>WENV180830008
ODKB01000178
[ODKB] human metagenome; G_DNA_Tongue dorsum
43798
43871
+
Glu
TTC
[ENA]
¢þ
>WENV180987730
ODVK01096624
[ODVK] human metagenome; G_DNA_Supragingival plaque
237
311
+
Glu
TTC
[ENA]
¢þ
>WENV181075048
OEAO01059571
[OEAO] human metagenome; G_DNA_Tongue dorsum
241
168
-
Glu
TTC
[ENA]
¢þ
>WENV181075122
OEAO01072897
[OEAO] human metagenome; G_DNA_Tongue dorsum
299
371
+
Glu
TTC
[ENA]
¢þ
>WENV181075139
OEAO01075225
[OEAO] human metagenome; G_DNA_Tongue dorsum
286
358
+
Glu
TTC
[ENA]
¢þ
>WENV181075292
OEAO01114884
[OEAO] human metagenome; G_DNA_Tongue dorsum
144
217
+
Glu
TTC
[ENA]
¢þ
>WENV181085623
OEAX01025791
[OEAX] human metagenome; G_DNA_Tongue dorsum
543
469
-
Glu
TTC
[ENA]
¢þ
>WENV181158832
OEIH01012561
[OEIH] human metagenome; G_DNA_Supragingival plaque
406
480
+
Glu
TTC
[ENA]
¢þ
>WENV181159208
OEIH01097092
[OEIH] human metagenome; G_DNA_Supragingival plaque
258
184
-
Glu
TTC
[ENA]
¢þ
>WENV181171834
OEIV010374719
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
313
239
-
Glu
TTC
[ENA]
¢þ
>WENV181274072
OFGH01043381
[OFGH] mouse gut metagenome; faeces
399
325
-
Glu
TTC
[ENA]
¢þ
>WENV181467693
OGER01025748
[OGER] metagenome; Human gut stool
900
974
+
Glu
TTC
[ENA]
¢þ
>WENV181610797
OGLQ01005501
[OGLQ] metagenome; Human gut stool
820
746
-
Glu
TTC
[ENA]
¢þ
>WENV181789137
OGRO01007958
[OGRO] human gut metagenome; faeces
136
62
-
Glu
TTC
[ENA]
¢þ
>WENV181810755
OGSV01004205
[OGSV] human gut metagenome; fecal sample 4 from infant 3
370
296
-
Glu
TTC
[ENA]
¢þ
>W141212234
AZQP01000009
Bacillota
Fervidicella metallireducens AeB [AZQP]
42544
42618
+
Glu
TTC
[ENA]
¡û
>W141212258
AZQP01000035
Bacillota
Fervidicella metallireducens AeB [AZQP]
29732
29658
-
Glu
TTC
[ENA]
¡û
>W141212273
AZQP01000055
Bacillota
Fervidicella metallireducens AeB [AZQP]
13406
13480
+
Glu
TTC
[ENA]
¡û
>W141212290
AZQP01000135
Bacillota
Fervidicella metallireducens AeB [AZQP]
153
227
+
Glu
TTC
[ENA]
¡û
>W141231558
BAUF01000002
Bacillota
Clostridium botulinum B str. Osaka05 [BAUF]
3527
3453
-
Glu
TTC
[ENA]
¡û
>C08000735
CP000853
Bacillota
Alkaliphilus oremlandii OhILAs [CP000853]
2612427
2612356
-
Glu
TTC
[Ensembl]
¡û
>C08000762
CP000853
Bacillota
Alkaliphilus oremlandii OhILAs [CP000853]
2604633
2604562
-
Glu
TTC
[Ensembl]
¡û
>C08000775
CP000853
Bacillota
Alkaliphilus oremlandii OhILAs [CP000853]
2598054
2597983
-
Glu
TTC
[Ensembl]
¡û
>C08000784
CP000853
Bacillota
Alkaliphilus oremlandii OhILAs [CP000853]
1924056
1923985
-
Glu
TTC
[Ensembl]
¡û
>WENV182892041
OKSH01012776
[OKSH] human gut metagenome; faeces
214
141
-
Glu
TTC
[ENA]
¢þ
>WENV183103390
OLNJ01000367
[OLNJ] human gut metagenome; faeces
40399
40473
+
Glu
TTC
[ENA]
¢þ
>WENV183172593
OLPC01024812
[OLPC] human gut metagenome; faeces
820
894
+
Glu
TTC
[ENA]
¢þ
>WENV183237626
OLQY01000894
[OLQY] human gut metagenome; faeces
21416
21342
-
Glu
TTC
[ENA]
¢þ
>WENV183554584
OOBM01044546
[OOBM] human gut metagenome; human gut
235
309
+
Glu
TTC
[ENA]
¢þ
>W141451945
JFBQ01000002
Bacillota
Clostridium sporogenes [JFBQ]
44482
44556
+
Glu
TTC
[ENA]
¡û
>W141451953
JFBQ01000003
Bacillota
Clostridium sporogenes [JFBQ]
459
533
+
Glu
TTC
[ENA]
¡û
>W141460519
JFGA01000366
Bacillota
Clostridium botulinum [JFGA]
1388
1462
+
Glu
TTC
[ENA]
¡û
>W141460541
JFGA01000531
Bacillota
Clostridium botulinum [JFGA]
567
641
+
Glu
TTC
[ENA]
¡û
>WENV170967980
MTKW01004816
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
13127
13053
-
Glu
TTC
[ENA]
¢þ
>WENV170968160
MTKW01006844
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
44223
44297
+
Glu
TTC
[ENA]
¢þ
>WENV170968255
MTKW01007508
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
9853
9927
+
Glu
TTC
[ENA]
¢þ
>WENV170970346
MTKW01064187
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1248
1174
-
Glu
TTC
[ENA]
¢þ
>C181012858
CP013242
Bacillota
Clostridium sporogenes CDC_67071 [CP013242]
3459303
3459377
+
Glu
TTC
-
¡û
>C181012865
CP013242
Bacillota
Clostridium sporogenes CDC_67071 [CP013242]
3459952
3460026
+
Glu
TTC
-
¡û
>C181013934
CP013850
Bacillota
Clostridium botulinum B305 [CP013850]
4018456
4018382
-
Glu
TTC
-
¡û
>C181013941
CP013850
Bacillota
Clostridium botulinum B305 [CP013850]
4017806
4017732
-
Glu
TTC
-
¡û
>C181195247
CP031097
Bacillota
Clostridium botulinum CFSAN034200 [CP031097]
2503558
2503632
+
Glu
TTC
-
¡û
>C181195254
CP031097
Bacillota
Clostridium botulinum CFSAN034200 [CP031097]
2504207
2504281
+
Glu
TTC
-
¡û
>W09103496
AAJG01000046
Bacillota
Syntrophomonas wolfei subsp. wolfei str. Goettingen [AAJG]
12588
12514
-
Glu
TTC
[ENA]
¡û
>W1910548220
FZOJ01000008
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
186647
186573
-
Glu
TTC
[ENA]
¡û
>W1910548245
FZOJ01000012
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
86905
86831
-
Glu
TTC
[ENA]
¡û
>W1910548257
FZOJ01000036
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
99
173
+
Glu
TTC
[ENA]
¡û
>W1910548268
FZOJ01000089
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
186
260
+
Glu
TTC
[ENA]
¡û
>W1911613742
POTG01000024
Bacillota
Clostridium botulinum CDC69068 [POTG]
97136
97062
-
Glu
TTC
[ENA]
¡û
>W1911613749
POTG01000024
Bacillota
Clostridium botulinum CDC69068 [POTG]
96487
96413
-
Glu
TTC
[ENA]
¡û
>W1911718403
QQWI01000012
Bacillota
Fusibacter sp. A1 [QQWI]
6295
6369
+
Glu
TTC
[ENA]
¡û
>W1911718416
QQWI01000014
Bacillota
Fusibacter sp. A1 [QQWI]
60357
60431
+
Glu
TTC
[ENA]
¡û
>W1911718433
QQWI01000014
Bacillota
Fusibacter sp. A1 [QQWI]
68419
68493
+
Glu
TTC
[ENA]
¡û
>W1911718445
QQWI01000031
Bacillota
Fusibacter sp. A1 [QQWI]
917
843
-
Glu
TTC
[ENA]
¡û
>W1911721886
QRAB01000006
Bacillota
Clostridium botulinum ATCC 17841 [QRAB]
43401
43475
+
Glu
TTC
[ENA]
¡û
>W1911721893
QRAB01000006
Bacillota
Clostridium botulinum ATCC 17841 [QRAB]
44050
44124
+
Glu
TTC
[ENA]
¡û
>C11106368
FP565809
Bacillota
Acetoanaerobium sticklandii DSM 519 [FP565809]
574724
574798
+
Glu
TTC
[Ensembl]
¡û
>C11106379
FP565809
Bacillota
Acetoanaerobium sticklandii DSM 519 [FP565809]
2691283
2691209
-
Glu
TTC
[Ensembl]
¡û
>C11106386
FP565809
Bacillota
Acetoanaerobium sticklandii DSM 519 [FP565809]
2510263
2510189
-
Glu
TTC
[Ensembl]
¡û
>W1511578382
LARB01000084
Bacillota
Ruminococcus sp. A254.MGS-254 [LARB]
2060
1986
-
Glu
TTC
[ENA]
¡û
>W1511699280
LGIK01000030
Bacillota
Clostridium botulinum ATCC 17862 [LGIK]
43368
43442
+
Glu
TTC
[ENA]
¡û
>W1511699287
LGIK01000030
Bacillota
Clostridium botulinum ATCC 17862 [LGIK]
44017
44091
+
Glu
TTC
[ENA]
¡û
>W1511699389
LGIL01000034
Bacillota
Clostridium botulinum ATCC 7949 [LGIL]
97544
97470
-
Glu
TTC
[ENA]
¡û
>W1511699396
LGIL01000034
Bacillota
Clostridium botulinum ATCC 7949 [LGIL]
96895
96821
-
Glu
TTC
[ENA]
¡û
>W1610026333
AUYY01000010
Bacillota
Clostridium botulinum B2 267 [AUYY]
97466
97392
-
Glu
TTC
[ENA]
¡û
>W1610026337
AUYY01000010
Bacillota
Clostridium botulinum B2 267 [AUYY]
97129
97055
-
Glu
TTC
[ENA]
¡û
>W1610026340
AUYY01000010
Bacillota
Clostridium botulinum B2 267 [AUYY]
96819
96745
-
Glu
TTC
[ENA]
¡û
>W1610026396
AUYZ01000010
Bacillota
Clostridium botulinum B2 433 [AUYZ]
97077
97003
-
Glu
TTC
[ENA]
¡û
>W1610026403
AUYZ01000010
Bacillota
Clostridium botulinum B2 433 [AUYZ]
96426
96352
-
Glu
TTC
[ENA]
¡û
>W1610026539
AUZC01000014
Bacillota
Clostridium botulinum F 357 [AUZC]
96025
95951
-
Glu
TTC
[ENA]
¡û
>W1610026542
AUZC01000014
Bacillota
Clostridium botulinum F 357 [AUZC]
95714
95640
-
Glu
TTC
[ENA]
¡û
>W1610601596
LFOR01000015
Bacillota
Clostridium botulinum [LFOR]
96452
96378
-
Glu
TTC
[ENA]
¡û
>W1610601616
LFOR01000018
Bacillota
Clostridium botulinum [LFOR]
11196
11122
-
Glu
TTC
[ENA]
¡û
>W1610601885
LFOW01000007
Bacillota
Clostridium botulinum [LFOW]
139
213
+
Glu
TTC
[ENA]
¡û
>W1610601976
LFOY01000002
Bacillota
Clostridium botulinum [LFOY]
51202
51276
+
Glu
TTC
[ENA]
¡û
>W1610602562
LFPI01000009
Bacillota
Clostridium botulinum [LFPI]
96944
96870
-
Glu
TTC
[ENA]
¡û
>W1610602589
LFPI01000019
Bacillota
Clostridium botulinum [LFPI]
42991
43065
+
Glu
TTC
[ENA]
¡û
>W1610604605
LFRB01000014
Bacillota
Clostridium botulinum [LFRB]
97454
97380
-
Glu
TTC
[ENA]
¡û
>W1610604612
LFRB01000014
Bacillota
Clostridium botulinum [LFRB]
96805
96731
-
Glu
TTC
[ENA]
¡û
>W1610661321
LJSZ01000045
Bacillota
Clostridium sporogenes [LJSZ]
99686
99612
-
Glu
TTC
[ENA]
¡û
>W1610661328
LJSZ01000045
Bacillota
Clostridium sporogenes [LJSZ]
99037
98963
-
Glu
TTC
[ENA]
¡û
>W1610907470
LSDI01000060
Bacillota
Peptostreptococcus anaerobius [LSDI]
182
254
+
Glu
TTC
[ENA]
¡û
>W1730012756
LFPY01000011
Bacillota
Clostridium botulinum [LFPY]
97261
97187
-
Glu
TTC
[ENA]
¡û
>W1710022382
AUYY01000010
Bacillota
Clostridium botulinum B2 267 [AUYY]
97466
97392
-
Glu
TTC
[ENA]
¡û
>W1710022386
AUYY01000010
Bacillota
Clostridium botulinum B2 267 [AUYY]
97129
97055
-
Glu
TTC
[ENA]
¡û
>W1710022389
AUYY01000010
Bacillota
Clostridium botulinum B2 267 [AUYY]
96819
96745
-
Glu
TTC
[ENA]
¡û
>W1710022445
AUYZ01000010
Bacillota
Clostridium botulinum B2 433 [AUYZ]
97077
97003
-
Glu
TTC
[ENA]
¡û
>W1710022452
AUYZ01000010
Bacillota
Clostridium botulinum B2 433 [AUYZ]
96426
96352
-
Glu
TTC
[ENA]
¡û
>W1710022588
AUZC01000014
Bacillota
Clostridium botulinum F 357 [AUZC]
96025
95951
-
Glu
TTC
[ENA]
¡û
>W1710022591
AUZC01000014
Bacillota
Clostridium botulinum F 357 [AUZC]
95714
95640
-
Glu
TTC
[ENA]
¡û
>W1710082568
BDHH01000006
Bacillota
Fusibacter sp. 3D3 [BDHH]
1730
1804
+
Glu
TTC
[ENA]
¡û
>W1710082578
BDHH01000007
Bacillota
Fusibacter sp. 3D3 [BDHH]
1177
1251
+
Glu
TTC
[ENA]
¡û
>W1710082600
BDHH01000020
Bacillota
Fusibacter sp. 3D3 [BDHH]
1686
1760
+
Glu
TTC
[ENA]
¡û
>W1710508829
FMWL01000018
Bacillota
Acidaminobacter hydrogenoformans DSM 2784 [FMWL]
1185
1259
+
Glu
TTC
[ENA]
¡û
>W1710508842
FMWL01000021
Bacillota
Acidaminobacter hydrogenoformans DSM 2784 [FMWL]
105
179
+
Glu
TTC
[ENA]
¡û
>W1710508848
FMWL01000021
Bacillota
Acidaminobacter hydrogenoformans DSM 2784 [FMWL]
3229
3303
+
Glu
TTC
[ENA]
¡û
>W1710508860
FMWL01000034
Bacillota
Acidaminobacter hydrogenoformans DSM 2784 [FMWL]
13036
12962
-
Glu
TTC
[ENA]
¡û
>W1710530528
FNOU01000016
Bacillota
Eubacterium barkeri [FNOU]
39957
40031
+
Glu
TTC
[ENA]
¡û
>W1710602776
FUYN01000006
Bacillota
Acetoanaerobium noterae [FUYN]
170262
170188
-
Glu
TTC
[ENA]
¡û
>W1710723112
LFOR01000015
Bacillota
Clostridium botulinum [LFOR]
96452
96378
-
Glu
TTC
[ENA]
¡û
>W1710723132
LFOR01000018
Bacillota
Clostridium botulinum [LFOR]
11196
11122
-
Glu
TTC
[ENA]
¡û
>W1710723401
LFOW01000007
Bacillota
Clostridium botulinum [LFOW]
139
213
+
Glu
TTC
[ENA]
¡û
>W1710723492
LFOY01000002
Bacillota
Clostridium botulinum [LFOY]
51202
51276
+
Glu
TTC
[ENA]
¡û
>W1710724078
LFPI01000009
Bacillota
Clostridium botulinum [LFPI]
96944
96870
-
Glu
TTC
[ENA]
¡û
>W1710724105
LFPI01000019
Bacillota
Clostridium botulinum [LFPI]
42991
43065
+
Glu
TTC
[ENA]
¡û
>W1710726121
LFRB01000014
Bacillota
Clostridium botulinum [LFRB]
97454
97380
-
Glu
TTC
[ENA]
¡û
>W1710726128
LFRB01000014
Bacillota
Clostridium botulinum [LFRB]
96805
96731
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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