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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.341785 (28 seq.)
>W131086621
AOBT01000010
Myxococcota
Myxococcus xanthus DZF1 [AOBT]
138542
138470
-
Val
CAC
[ENA]
¡û
>C014490
CP000113
Myxococcota
Myxococcus xanthus DK 1622 [CP000113]
4057336
4057407
+
Val
CAC
[Ensembl]
¡û
>w012163
AAMD01000138
Myxococcota
Stigmatella aurantiaca DW4/3-1 [AAMD]
5802
5876
+
Val
CAC
[ENA]
¡û
>WENV180019690
FTCH01000155
[FTCH] metagenome; soil
2147
2221
+
Val
CAC
[ENA]
¢þ
>WENV181184969
OEKZ01000410
[OEKZ] metagenome; 1998
4757
4828
+
Val
CAC
[ENA]
¢þ
>WENV183697203
OUNJ010070217
[OUNJ] metagenome; soil
63
137
+
Val
CAC
[ENA]
¢þ
>C181060631
CP022203
Myxococcota
Corallococcus macrosporus DSM 14697 [CP022203]
4091337
4091409
+
Val
CAC
-
¡û
>C191013126
CP017169
Myxococcota
Myxococcus xanthus GH3.5.6c2 [CP017169]
4169790
4169862
+
Val
CAC
-
¡û
>C191013191
CP017170
Myxococcota
Myxococcus xanthus GH5.1.9c20 [CP017170]
4054172
4054244
+
Val
CAC
-
¡û
>C191013257
CP017171
Myxococcota
Myxococcus xanthus KF3.2.8c11 [CP017171]
3896735
3896807
+
Val
CAC
-
¡û
>C191013322
CP017172
Myxococcota
Myxococcus xanthus KF4.3.9c1 [CP017172]
4146105
4146177
+
Val
CAC
-
¡û
>C191013387
CP017173
Myxococcota
Myxococcus xanthus MC3.3.5c16 [CP017173]
4096448
4096520
+
Val
CAC
-
¡û
>C191013452
CP017174
Myxococcota
Myxococcus xanthus MC3.5.9c15 [CP017174]
4096448
4096520
+
Val
CAC
-
¡û
>W141695162
JMCB01000003
Myxococcota
Hyalangium minutum [JMCB]
687639
687567
-
Val
CAC
[ENA]
¡û
>W141695264
JMCC01000068
Myxococcota
Enhygromyxa salina [JMCC]
77216
77144
-
Val
CAC
[ENA]
¡û
>W1911701627
QNUN01000020
Myxococcota
Corallococcus sp. H22C18031201 [QNUN]
21744
21673
-
Val
CAC
[ENA]
¡û
>C151008196
CP006003
Myxococcota
Myxococcus fulvus 124B02 [CP006003]
6276320
6276246
-
Val
CAC
[Ensembl]
¡û
>C151091045
CP012109
Myxococcota
Myxococcus hansupus mixupus [CP012109]
4380593
4380521
-
Val
CAC
[Ensembl]
¡û
>C11114319
CP002830
Myxococcota
Corallococcus macrosporus HW-1 [CP002830]
5964480
5964552
+
Val
CAC
[Ensembl]
¡û
>C11119110
CP002271
Myxococcota
Stigmatella aurantiaca DW4/3-1 [CP002271]
4817656
4817728
+
Val
CAC
[Ensembl]
¡û
>W121102899
AKXT01000065
Myxococcota
Myxococcus hansupus DSM 436 [AKXT]
11150
11222
+
Val
CAC
[ENA]
¡û
>W121103101
AKYI01000122
Myxococcota
Myxococcus xanthus DZ2 [AKYI]
4720
4648
-
Val
CAC
[ENA]
¡û
>C131011685
CP004025
Myxococcota
Myxococcus stipitatus DSM 14675 [CP004025]
5810340
5810266
-
Val
CAC
[Ensembl]
¡û
>W1710513708
FNAJ01000007
Myxococcota
Myxococcus virescens [FNAJ]
196261
196333
+
Val
CAC
[ENA]
¡û
>W1710529798
FNOH01000010
Myxococcota
Myxococcus xanthus [FNOH]
203116
203188
+
Val
CAC
[ENA]
¡û
>W1710544122
FOAP01000012
Myxococcota
Stigmatella aurantiaca [FOAP]
312
240
-
Val
CAC
[ENA]
¡û
>W1710553976
FOIB01000003
Myxococcota
Myxococcus fulvus [FOIB]
222714
222788
+
Val
CAC
[ENA]
¡û
>W1710554329
FOIJ01000001
Myxococcota
Stigmatella erecta [FOIJ]
1005180
1005108
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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