This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.341804 (124 seq.)
>W1711228154
LXWI01000050
Campylobacterota
Helicobacter pullorum [LXWI]
1809
1735
-
Gly
GCC
[ENA]
¡û
>W1711302771
MAJF01000018
Campylobacterota
Helicobacter pullorum [MAJF]
9101
9027
-
Gly
GCC
[ENA]
¡û
>W1711302821
MAJG01000098
Campylobacterota
Helicobacter pullorum [MAJG]
1807
1733
-
Gly
GCC
[ENA]
¡û
>W1711306351
MANJ01000078
Campylobacterota
Helicobacter pullorum [MANJ]
3080
3154
+
Gly
GCC
[ENA]
¡û
>W1711306357
MANK01000001
Campylobacterota
Helicobacter pullorum [MANK]
1822
1748
-
Gly
GCC
[ENA]
¡û
>W1711307556
MAOZ01000022
Campylobacterota
Helicobacter pullorum [MAOZ]
3014
3088
+
Gly
GCC
[ENA]
¡û
>W1711307596
MAPA01000067
Campylobacterota
Helicobacter pullorum [MAPA]
1712
1638
-
Gly
GCC
[ENA]
¡û
>W1711307613
MAPB01000013
Campylobacterota
Helicobacter pullorum [MAPB]
7235
7161
-
Gly
GCC
[ENA]
¡û
>W1711307669
MAPC01000057
Campylobacterota
Helicobacter pullorum [MAPC]
3111
3185
+
Gly
GCC
[ENA]
¡û
>W1711307696
MAPD01000030
Campylobacterota
Helicobacter pullorum [MAPD]
3008
3082
+
Gly
GCC
[ENA]
¡û
>W1711307705
MAPD01000069
Campylobacterota
Helicobacter pullorum [MAPD]
1704
1630
-
Gly
GCC
[ENA]
¡û
>W1711307742
MAPE01000068
Campylobacterota
Helicobacter pullorum [MAPE]
3052
3126
+
Gly
GCC
[ENA]
¡û
>W131145075
AQFW01000004
Campylobacterota
Helicobacter bilis WiWa [AQFW]
212382
212308
-
Gly
GCC
[ENA]
¡û
>C010577
AE017125
Campylobacterota
Helicobacter hepaticus ATCC 51449 [AE017125]
362963
362889
-
Gly
GCC
[Ensembl]
¡û
>WENV180277244
OBHV01140964
[OBHV] metagenome; water
80
8
-
Gly
GCC
[ENA]
¢þ
>WENV181197042
OEQZ01013674
[OEQZ] metagenome; Caecal content
491
417
-
Gly
GCC
[ENA]
¢þ
>WENV181199268
OERG01010038
[OERG] metagenome; Caecal content
26
100
+
Gly
GCC
[ENA]
¢þ
>WENV181203557
OERW01001584
[OERW] metagenome; Caecal content
383
457
+
Gly
GCC
[ENA]
¢þ
>WENV181208037
OFBA01011105
[OFBA] metagenome; hydrothermal vent
200
126
-
Gly
GCC
[ENA]
¢þ
>WENV181209263
OFBD01020130
[OFBD] metagenome; hydrothermal vent
328
402
+
Gly
GCC
[ENA]
¢þ
>W08010299
ABQS01000088
Campylobacterota
Helicobacter canadensis MIT 98-5491 [ABQS]
8823
8897
+
Gly
GCC
[ENA]
¡û
>W08010311
ABQT01000004
Campylobacterota
Helicobacter cinaedi CCUG 18818 [ABQT]
18664
18593
-
Gly
GCC
[ENA]
¡û
>W08010345
ABQU01000004
Campylobacterota
Helicobacter pullorum MIT 98-5489 [ABQU]
23764
23693
-
Gly
GCC
[ENA]
¡û
>WENV183074059
OLIU01006681
[OLIU] human gut metagenome; stool sample
2946
3020
+
Gly
GCC
[ENA]
¢þ
>WENV170575484
FPHB01000020
[FPHB] hydrothermal vent metagenome genome assembly, contig: NODE_29.; water
37085
37159
+
Gly
GCC
[ENA]
¢þ
>WENV170636941
JFBN01307248
[JFBN] chicken gut metagenome; ceca of Broiler chicken
43415
43341
-
Gly
GCC
[ENA]
¢þ
>C181054467
CP021886
Campylobacterota
Helicobacter apodemus SCJK1 [CP021886]
1782
1856
+
Gly
GCC
-
¡û
>C181213876
LS483446
Campylobacterota
Helicobacter mustelae NCTC12198 [LS483446]
1243815
1243741
-
Gly
GCC
-
¡û
>C191000211
AP017374
Campylobacterota
Helicobacter cinaedi MRY08-1234 [AP017374]
1626620
1626546
-
Gly
GCC
-
¡û
>C191002286
AP018446
Campylobacterota
Helicobacter cinaedi P03D0629 [AP018446]
1648557
1648483
-
Gly
GCC
-
¡û
>C191002322
AP018447
Campylobacterota
Helicobacter cinaedi P06D0798 [AP018447]
1610011
1609937
-
Gly
GCC
-
¡û
>C191003915
AP018676
Campylobacterota
Helicobacter cinaedi P01D0000 [AP018676]
1595596
1595522
-
Gly
GCC
-
¡û
>C191209104
LR134366
Campylobacterota
Wolinella succinogenes NCTC11488 [LR134366]
1159589
1159515
-
Gly
GCC
-
¡û
>C191213243
LR134509
Campylobacterota
Helicobacter pullorum NCTC13154 [LR134509]
1313063
1313137
+
Gly
GCC
-
¡û
>W141558685
JHWC01000010
Campylobacterota
Helicobacter rodentium ATCC 700285 [JHWC]
7263
7337
+
Gly
GCC
[ENA]
¡û
>W09119160
ACDO01000006
Campylobacterota
Helicobacter winghamensis ATCC BAA-430 [ACDO]
43829
43903
+
Gly
GCC
[ENA]
¡û
>W09134351
ACSF01000003
Campylobacterota
Helicobacter canadensis MIT 98-5491(ACSF) [ACSF]
149526
149600
+
Gly
GCC
[ENA]
¡û
>W1910546128
FZMI01000024
Campylobacterota
Helicobacter cinaedi [FZMI]
56176
56102
-
Gly
GCC
[ENA]
¡û
>W1910546157
FZMJ01000010
Campylobacterota
Helicobacter cinaedi [FZMJ]
35417
35343
-
Gly
GCC
[ENA]
¡û
>W1910546266
FZMM01000012
Campylobacterota
Helicobacter muridarum [FZMM]
81722
81796
+
Gly
GCC
[ENA]
¡û
>W1910546580
FZMV01000003
Campylobacterota
Helicobacter pullorum [FZMV]
6214
6288
+
Gly
GCC
[ENA]
¡û
>W1910546684
FZMX01000025
Campylobacterota
Helicobacter pullorum [FZMX]
42238
42164
-
Gly
GCC
[ENA]
¡û
>W1910546871
FZNF01000034
Campylobacterota
Helicobacter trogontum [FZNF]
36231
36157
-
Gly
GCC
[ENA]
¡û
>W1910549576
FZPJ01000009
Campylobacterota
Helicobacter mesocricetorum [FZPJ]
89142
89216
+
Gly
GCC
[ENA]
¡û
>W1910549699
FZPN01000002
Campylobacterota
Helicobacter canadensis [FZPN]
176822
176896
+
Gly
GCC
[ENA]
¡û
>W1910549777
FZPP01000004
Campylobacterota
Helicobacter marmotae [FZPP]
12049
12123
+
Gly
GCC
[ENA]
¡û
>W1910584312
JXTX01000001
Campylobacterota
Helicobacter pullorum 2013BJHL [JXTX]
250405
250479
+
Gly
GCC
[ENA]
¡û
>W1910663817
MBPH01000035
Campylobacterota
Helicobacter winghamensis 196_13 [MBPH]
95281
95207
-
Gly
GCC
[ENA]
¡û
>W1910663853
MBPI01000033
Campylobacterota
Helicobacter winghamensis 228_13 [MBPI]
95305
95231
-
Gly
GCC
[ENA]
¡û
>W1910663890
MBPJ01000041
Campylobacterota
Helicobacter winghamensis 294_13 [MBPJ]
91198
91124
-
Gly
GCC
[ENA]
¡û
>W1910663926
MBPK01000042
Campylobacterota
Helicobacter winghamensis 295_13 [MBPK]
91201
91127
-
Gly
GCC
[ENA]
¡û
>W1910663960
MBPL01000044
Campylobacterota
Helicobacter winghamensis 296_13 [MBPL]
91201
91127
-
Gly
GCC
[ENA]
¡û
>W1910756153
MLAP01000001
Campylobacterota
Helicobacter sp. 12S02634-8 [MLAP]
41641
41715
+
Gly
GCC
[ENA]
¡û
>W1910756262
MLAS01000002
Campylobacterota
Helicobacter sp. 13S00477-4 [MLAS]
115932
115858
-
Gly
GCC
[ENA]
¡û
>W1910852896
NBIU01000005
Campylobacterota
Helicobacter valdiviensis WBE14 [NBIU]
66903
66829
-
Gly
GCC
[ENA]
¡û
>W1910914965
NHYL01000003
Campylobacterota
Helicobacter sp. 11-8110 [NHYL]
21290
21364
+
Gly
GCC
[ENA]
¡û
>W1910915048
NHYN01000015
Campylobacterota
Helicobacter sp. 15-1451 [NHYN]
876
802
-
Gly
GCC
[ENA]
¡û
>W1911770799
QXJF01000005
Campylobacterota
Helicobacter labetoulli 48519 [QXJF]
6675
6749
+
Gly
GCC
[ENA]
¡û
>W1911770856
QXJG01000018
Campylobacterota
Helicobacter burdigaliensis CNRCH 2005/566H [QXJG]
21328
21254
-
Gly
GCC
[ENA]
¡û
>W1810002656
BEYY01000086
Campylobacterota
Helicobacter cinaedi P04D0736 [BEYY]
85320
85246
-
Gly
GCC
[ENA]
¡û
>W1810002703
BEYZ01000169
Campylobacterota
Helicobacter cinaedi P05D0741 [BEYZ]
6696
6770
+
Gly
GCC
[ENA]
¡û
>W1810002745
BEZB01000228
Campylobacterota
Helicobacter cinaedi P07D0876 [BEZB]
30535
30461
-
Gly
GCC
[ENA]
¡û
>W1810002775
BEZC01000191
Campylobacterota
Helicobacter cinaedi P08D0905 [BEZC]
6699
6773
+
Gly
GCC
[ENA]
¡û
>W1810002803
BEZD01000069
Campylobacterota
Helicobacter cinaedi P09D0927 [BEZD]
85315
85241
-
Gly
GCC
[ENA]
¡û
>W1810002845
BEZE01000189
Campylobacterota
Helicobacter cinaedi P10D0937 [BEZE]
6697
6771
+
Gly
GCC
[ENA]
¡û
>W1810002882
BEZF01000157
Campylobacterota
Helicobacter cinaedi P11D0946 [BEZF]
6709
6783
+
Gly
GCC
[ENA]
¡û
>W1810002909
BEZG01000061
Campylobacterota
Helicobacter cinaedi P13D0979 [BEZG]
85298
85224
-
Gly
GCC
[ENA]
¡û
>W1810002949
BEZH01000046
Campylobacterota
Helicobacter cinaedi P14D1067 [BEZH]
6683
6757
+
Gly
GCC
[ENA]
¡û
>W1810002988
BEZI01000155
Campylobacterota
Helicobacter cinaedi P17D1144 [BEZI]
6677
6751
+
Gly
GCC
[ENA]
¡û
>W1810003035
BEZJ01000135
Campylobacterota
Helicobacter cinaedi P18D1268 [BEZJ]
6682
6756
+
Gly
GCC
[ENA]
¡û
>W1810003072
BEZK01000127
Campylobacterota
Helicobacter cinaedi P19D1315 [BEZK]
6681
6755
+
Gly
GCC
[ENA]
¡û
>W1810003086
BEZL01000051
Campylobacterota
Helicobacter cinaedi P20D1835 [BEZL]
85281
85207
-
Gly
GCC
[ENA]
¡û
>W1810003124
BEZM01000053
Campylobacterota
Helicobacter cinaedi CCUG18818 [BEZM]
12848
12774
-
Gly
GCC
[ENA]
¡û
>W1810003162
BEZN01000058
Campylobacterota
Helicobacter cinaedi P21D1863 [BEZN]
85307
85233
-
Gly
GCC
[ENA]
¡û
>W1810003216
BEZO01000202
Campylobacterota
Helicobacter cinaedi P02D0213 [BEZO]
6704
6778
+
Gly
GCC
[ENA]
¡û
>W1810003246
BEZP01000186
Campylobacterota
Helicobacter cinaedi P15D1072 [BEZP]
6691
6765
+
Gly
GCC
[ENA]
¡û
>W1810003275
BEZQ01000140
Campylobacterota
Helicobacter cinaedi P16D1106 [BEZQ]
23845
23771
-
Gly
GCC
[ENA]
¡û
>W1810003322
BEZR01000169
Campylobacterota
Helicobacter cinaedi P12D0946 [BEZR]
6727
6801
+
Gly
GCC
[ENA]
¡û
>W1810003348
BEZS01000063
Campylobacterota
Helicobacter cinaedi P11D1015 [BEZS]
85350
85276
-
Gly
GCC
[ENA]
¡û
>W1810010682
BGKD01000059
Campylobacterota
Helicobacter cinaedi CCUG19503 [BGKD]
6692
6766
+
Gly
GCC
[ENA]
¡û
>W1810010713
BGKE01000052
Campylobacterota
Helicobacter cinaedi CCUG19504 [BGKE]
6705
6779
+
Gly
GCC
[ENA]
¡û
>W1810010756
BGKF01000039
Campylobacterota
Helicobacter cinaedi PAGU617 [BGKF]
56285
56211
-
Gly
GCC
[ENA]
¡û
>W1810010785
BGKG01000029
Campylobacterota
Helicobacter cinaedi PAGU1382 [BGKG]
22335
22261
-
Gly
GCC
[ENA]
¡û
>W1810010831
BGKH01000051
Campylobacterota
Helicobacter cinaedi PAGU628 [BGKH]
6720
6794
+
Gly
GCC
[ENA]
¡û
>W1810046587
NXLR01000003
Campylobacterota
Helicobacter marmotae MIT 98-6070 [NXLR]
137349
137275
-
Gly
GCC
[ENA]
¡û
>W1810046622
NXLS01000002
Campylobacterota
Helicobacter ganmani MIT 99-5101 [NXLS]
67169
67095
-
Gly
GCC
[ENA]
¡û
>W1511350741
JRMP01000178
Campylobacterota
Helicobacter saguini MIT 97-6194 [JRMP]
1803083
1803157
+
Gly
GCC
[ENA]
¡û
>W1511350772
JRMQ01000001
Campylobacterota
Helicobacter japonicus MIT 01-6451 [JRMQ]
112072
111998
-
Gly
GCC
[ENA]
¡û
>W1511350863
JRMS01000080
Campylobacterota
Helicobacter sp. MIT 03-1614 [JRMS]
2709
2783
+
Gly
GCC
[ENA]
¡û
>W1511353097
JROY01000011
Campylobacterota
Helicobacter sp. MIT 03-1616 [JROY]
21633
21559
-
Gly
GCC
[ENA]
¡û
>W1511353196
JRPA01003082
Campylobacterota
Helicobacter sp. MIT 05-5294 [JRPA]
43
117
+
Gly
GCC
[ENA]
¡û
>W1511353228
JRPB01000010
Campylobacterota
Helicobacter sp. MIT 11-5569 [JRPB]
15845
15771
-
Gly
GCC
[ENA]
¡û
>W1511353248
JRPC01000042
Campylobacterota
Helicobacter apodemus MIT-03-7007 [JRPC]
11524
11450
-
Gly
GCC
[ENA]
¡û
>W1511353327
JRPE01000052
Campylobacterota
Helicobacter magdeburgensis MIT 96-1001 [JRPE]
6760
6834
+
Gly
GCC
[ENA]
¡û
>W1511353363
JRPF01000002
Campylobacterota
Helicobacter typhlonius MIT 98-6810 [JRPF]
81301
81375
+
Gly
GCC
[ENA]
¡û
>W1511353423
JRPH01000001
Campylobacterota
Helicobacter bilis Missouri [JRPH]
35620
35694
+
Gly
GCC
[ENA]
¡û
>W1511353483
JRPI01000002
Campylobacterota
Helicobacter bilis ATCC 49314 [JRPI]
604909
604835
-
Gly
GCC
[ENA]
¡û
>W1511353850
JRPR01000039
Campylobacterota
Helicobacter jaachi MIT 09-6949 [JRPR]
540
466
-
Gly
GCC
[ENA]
¡û
>C121001360
AP012344
Campylobacterota
Helicobacter cinaedi PAGU611 [AP012344]
1511550
1511476
-
Gly
GCC
[Ensembl]
¡û
>C161081201
CP014991
Campylobacterota
Helicobacter himalayensis YS1 [CP014991]
633224
633150
-
Gly
GCC
-
¡û
>C161108054
LN907858
Campylobacterota
Helicobacter typhlonius [LN907858]
1198794
1198720
-
Gly
GCC
[Ensembl]
¡û
>C131000547
AP012492
Campylobacterota
Helicobacter cinaedi CCUG 18818 = ATCC BAA-847 [AP012492]
1648152
1648078
-
Gly
GCC
[Ensembl]
¡û
>W1610522052
JNOA01000004
Campylobacterota
Helicobacter pullorum [JNOA]
24639
24565
-
Gly
GCC
[ENA]
¡û
>W1610522087
JNOB01000001
Campylobacterota
Helicobacter pullorum [JNOB]
1723
1649
-
Gly
GCC
[ENA]
¡û
>W1610522124
JNOC01000015
Campylobacterota
Helicobacter pullorum [JNOC]
56792
56718
-
Gly
GCC
[ENA]
¡û
>W1610522208
JNUR01000004
Campylobacterota
Helicobacter pullorum [JNUR]
23830
23756
-
Gly
GCC
[ENA]
¡û
>W1611012071
LXWI01000050
Campylobacterota
Helicobacter pullorum [LXWI]
1809
1735
-
Gly
GCC
[ENA]
¡û
>W1611053096
MAJF01000018
Campylobacterota
Helicobacter pullorum [MAJF]
9101
9027
-
Gly
GCC
[ENA]
¡û
>W1611053146
MAJG01000098
Campylobacterota
Helicobacter pullorum [MAJG]
1807
1733
-
Gly
GCC
[ENA]
¡û
>W1611055705
MANJ01000078
Campylobacterota
Helicobacter pullorum [MANJ]
3080
3154
+
Gly
GCC
[ENA]
¡û
>W1611055711
MANK01000001
Campylobacterota
Helicobacter pullorum [MANK]
1822
1748
-
Gly
GCC
[ENA]
¡û
>W1611055839
MAOZ01000022
Campylobacterota
Helicobacter pullorum [MAOZ]
3014
3088
+
Gly
GCC
[ENA]
¡û
>W1611055879
MAPA01000067
Campylobacterota
Helicobacter pullorum [MAPA]
1712
1638
-
Gly
GCC
[ENA]
¡û
>W1611055896
MAPB01000013
Campylobacterota
Helicobacter pullorum [MAPB]
7235
7161
-
Gly
GCC
[ENA]
¡û
>W1611055952
MAPC01000057
Campylobacterota
Helicobacter pullorum [MAPC]
3111
3185
+
Gly
GCC
[ENA]
¡û
>W1611055979
MAPD01000030
Campylobacterota
Helicobacter pullorum [MAPD]
3008
3082
+
Gly
GCC
[ENA]
¡û
>W1611055988
MAPD01000069
Campylobacterota
Helicobacter pullorum [MAPD]
1704
1630
-
Gly
GCC
[ENA]
¡û
>W1611056025
MAPE01000068
Campylobacterota
Helicobacter pullorum [MAPE]
3052
3126
+
Gly
GCC
[ENA]
¡û
>W1710572927
FOXB01000002
Campylobacterota
Hydrogenimonas thermophila [FOXB]
107784
107858
+
Gly
GCC
[ENA]
¡û
>W1710572951
FOXB01000017
Campylobacterota
Hydrogenimonas thermophila [FOXB]
36300
36374
+
Gly
GCC
[ENA]
¡û
>W1710621978
JNOA01000004
Campylobacterota
Helicobacter pullorum [JNOA]
24639
24565
-
Gly
GCC
[ENA]
¡û
>W1710622013
JNOB01000001
Campylobacterota
Helicobacter pullorum [JNOB]
1723
1649
-
Gly
GCC
[ENA]
¡û
>W1710622050
JNOC01000015
Campylobacterota
Helicobacter pullorum [JNOC]
56792
56718
-
Gly
GCC
[ENA]
¡û
>W1710622134
JNUR01000004
Campylobacterota
Helicobacter pullorum [JNUR]
23830
23756
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK