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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.341855 (37 seq.)
>W1710891844
LNDC01000014
Cyanobacteriota
Geitlerinema sp. PCC 9228 [LNDC]
537
463
-
Gln
TTG
[ENA]
¡û
>W1710891845
LNDC01000014
Cyanobacteriota
Geitlerinema sp. PCC 9228 [LNDC]
413
342
-
Gln
TTG
[ENA]
¡û
>W1711088504
LSYZ01000004
Cyanobacteriota
Leptolyngbya valderiana BDU 20041 [LSYZ]
30918
30990
+
Gln
TTG
[ENA]
¡û
>W1711190055
LWRO01000049
Cyanobacteriota
Geitlerinema sp. BBD BBD 1991-9 [LWRO]
17495
17567
+
Gln
TTG
[ENA]
¡û
>C025518
BA000039
Cyanobacteriota
Thermosynechococcus vestitus BP-1 [BA000039]
1773740
1773811
+
Gln
TTG
[Ensembl]
¡û
>w021611
AAVU01000003
Cyanobacteriota
Lyngbya sp. PCC 8106 [AAVU]
182044
182118
+
Gln
TTG
[ENA]
¡û
>WENV180012545
FMSI01005875
[FMSI] soil metagenome; Soil
72
1
-
Gln
TTG
[ENA]
¢þ
>WENV180027373
FTIX01306874
[FTIX] metagenome; soil
137
63
-
Gln
TTG
[ENA]
¢þ
>W141004297
AFXD01000037
Cyanobacteriota
Arthrospira platensis C1 [AFXD]
25087
25014
-
Gln
TTG
[ENA]
¡û
>WENV181414519
OGCL01000553
[OGCL] hot springs metagenome; Hot spring water
16708
16779
+
Gln
TTG
[ENA]
¢þ
>W141240130
CAFN01000124
Cyanobacteriota
Limnospira indica PCC 8005 [CAFN]
42526
42599
+
Gln
TTG
[ENA]
¡û
>WENV170973763
MTKY01050905
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
96
170
+
Gln
TTG
[ENA]
¢þ
>CHL1810009675
KF176554
Viridiplantae
Berberis bealei (KF176554)
6694
6623
-
Gln
TTG
[ENA]
¡û
>CHL1810013893
KM057374
Viridiplantae
Berberis amurensis (KM057374)
6695
6624
-
Gln
TTG
[ENA]
¡û
>CHL1810013921
KM057375
Viridiplantae
Berberis koreana (KM057375)
6689
6618
-
Gln
TTG
[ENA]
¡û
>CHL1810040751
KY407658
Viridiplantae
Pseudocharacium americanum (KY407658)
103414
103341
-
Gln
TTG
[ENA]
¡û
>CHL1810040779
KY407659
Viridiplantae
Ignatius tetrasporus (KY407659)
103372
103299
-
Gln
TTG
[ENA]
¡û
>CHL1810049723
MF067398
Viridiplantae
Cressa cretica (MF067398)
5961
5890
-
Gln
TTG
[ENA]
¡û
>CHL1810058909
MG677935
Viridiplantae
Haematococcus lacustris UTEX 2505 (MG677935)
320256
320329
+
Gln
TTG
[ENA]
¡û
>C181030471
CP018092
Cyanobacteriota
Thermostichus lividus PCC 6715 [CP018092]
1984614
1984685
+
Gln
TTG
-
¡û
>C191001206
AP018202
Cyanobacteriota
Thermostichus vulcanus NIES-2134 [AP018202]
1648497
1648568
+
Gln
TTG
-
¡û
>C191085213
CP032152
Cyanobacteriota
Thermosynechococcus vestitus E542 [CP032152]
661642
661713
+
Gln
TTG
-
¡û
>W09113151
ABYK01000008
Cyanobacteriota
Limnospira maxima CS-328 [ABYK]
7063
6990
-
Gln
TTG
[ENA]
¡û
>W09134552
ACSK01000391
Cyanobacteriota
Arthrospira platensis str. Paraca [ACSK]
975
1048
+
Gln
TTG
[ENA]
¡û
>W1910194303
CZDF01000132
Cyanobacteriota
Planktothrix tepida PCC 9214 [CZDF]
431317
431388
+
Gln
TTG
[ENA]
¡û
>W1910339384
FSSI01000062
Cyanobacteriota
Phormidium lacuna HE10JO [FSSI]
13214
13287
+
Gln
TTG
[ENA]
¡û
>W1910339431
FSSI02000062
Cyanobacteriota
Phormidium lacuna HE10JO [FSSI]
13214
13287
+
Gln
TTG
[ENA]
¡û
>C141007931
CP006735
Cyanobacteriota
Thermosynechococcus sp. NK55a [CP006735]
1089105
1089176
+
Gln
TTG
-
¡û
>W1911204856
NRIU01000998
Cyanobacteriota
Geitlerinema sp. FC II [NRIU]
2690
2618
-
Gln
TTG
[ENA]
¡û
>W10111326
ADDH01000018
Cyanobacteriota
Limnospira indica PCC 8005 [ADDH]
4347
4274
-
Gln
TTG
[ENA]
¡û
>W11114269
ADDH01000018
Cyanobacteriota
Limnospira indica PCC 8005 [ADDH]
4347
4274
-
Gln
TTG
[ENA]
¡û
>W1511582891
LATL02000045
Cyanobacteriota
Limnoraphis robusta CS-951 [LATL]
36366
36437
+
Gln
TTG
[ENA]
¡û
>C161049400
CP013008
Cyanobacteriota
Arthrospira platensis YZ [CP013008]
4960251
4960178
-
Gln
TTG
-
¡û
>C161103151
FO818640
Cyanobacteriota
Limnospira indica PCC 8005 [FO818640]
4210794
4210867
+
Gln
TTG
-
¡û
>C131004335
CP003558
Cyanobacteriota
Synechococcus sp. PCC 6312 [CP003558]
44337
44262
-
Gln
TTG
[Ensembl]
¡û
>W1610923043
LSYZ01000004
Cyanobacteriota
Leptolyngbya valderiana BDU 20041 [LSYZ]
30918
30990
+
Gln
TTG
[ENA]
¡û
>W1610992174
LWRO01000049
Cyanobacteriota
Geitlerinema sp. BBD BBD 1991-9 [LWRO]
17495
17567
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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