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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.341876 (54 seq.)
>W1710862697
LMEO01000045
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
1397155
1397084
-
Gln
TTG
[ENA]
¡û
>W1710879844
LMRY01000011
Bacillota
Paenibacillus sp. Soil724D2 [LMRY]
272
343
+
Gln
TTG
[ENA]
¡û
>W1710880102
LMSD01000003
Bacillota
Paenibacillus sp. Soil750 [LMSD]
323
394
+
Gln
TTG
[ENA]
¡û
>W1710880510
LMSJ01000044
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
357
428
+
Gln
TTG
[ENA]
¡û
>W1711252673
LYPC01000021
Bacillota
Paenibacillus pectinilyticus [LYPC]
229
300
+
Gln
TTG
[ENA]
¡û
>W131229686
AUGY01000222
Bacillota
Paenibacillus alginolyticus DSM 5050 [AUGY]
210
281
+
Gln
TTG
[ENA]
¡û
>W1711338665
MBTG01000041
Bacillota
Paenibacillus ferrarius [MBTG]
46840
46769
-
Gln
TTG
[ENA]
¡û
>W1711677152
MRTH01000047
Bacillota
Paenibacillus sp. FSL H7-0331 [MRTH]
57391
57320
-
Gln
TTG
[ENA]
¡û
>W1711677162
MRTH01000171
Bacillota
Paenibacillus sp. FSL H7-0331 [MRTH]
86
12
-
Gln
TTG
[ENA]
¡û
>W131176701
ARKG01000037
Bacillota
Cohnella laeviribosi DSM 21336 [ARKG]
7668
7594
-
Gln
TTG
[ENA]
¡û
>W131176710
ARKG01000055
Bacillota
Cohnella laeviribosi DSM 21336 [ARKG]
20836
20762
-
Gln
TTG
[ENA]
¡û
>W141251556
CBQR020000058
Bacillota
Gorillibacterium massiliense G5 [CBQR]
508
582
+
Gln
TTG
[ENA]
¡û
>W141251610
CBQR020000167
Bacillota
Gorillibacterium massiliense G5 [CBQR]
1142
1216
+
Gln
TTG
[ENA]
¡û
>WENV170706301
LNAP01001925
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
278
351
+
Gln
TTG
[ENA]
¢þ
>C191106156
CP033433
Bacillota
Cohnella candidum 18JY8-7 [CP033433]
3605524
3605450
-
Gln
TTG
-
¡û
>C191125225
CP034437
Bacillota
Paenibacillus albus 18JY67-1 [CP034437]
3676064
3676138
+
Gln
TTG
-
¡û
>C191125242
CP034437
Bacillota
Paenibacillus albus 18JY67-1 [CP034437]
6297036
6296962
-
Gln
TTG
-
¡û
>W141564716
JIAZ01000023
Bacillota
Paenibacillus sp. URHA0014 [JIAZ]
90723
90652
-
Gln
TTG
[ENA]
¡û
>W1910154535
BILU01000277
Bacillota
Paenibacillus alginolyticus DSM 5050 = NBRC 15375 [BILU]
116
187
+
Gln
TTG
[ENA]
¡û
>W1910505756
FYEP01000043
Bacillota
Paenibacillus tyrfis B69 [FYEP]
37626
37553
-
Gln
TTG
[ENA]
¡û
>W1810697154
QLUW01000001
Bacillota
Paenibacillus montanisoli RA17 [QLUW]
1310
1384
+
Gln
TTG
[ENA]
¡û
>W1810697164
QLUW01000001
Bacillota
Paenibacillus montanisoli RA17 [QLUW]
2024413
2024339
-
Gln
TTG
[ENA]
¡û
>W1810697208
QLUW01000006
Bacillota
Paenibacillus montanisoli RA17 [QLUW]
497
571
+
Gln
TTG
[ENA]
¡û
>W1511433043
JUGY01000009
Bacillota
Paenibacillus chondroitinus OK414 [JUGY]
572
643
+
Gln
TTG
[ENA]
¡û
>W1511499696
JXAK01000083
Bacillota
Paenibacillus sp. VKM B-2647 [JXAK]
22054
21983
-
Gln
TTG
[ENA]
¡û
>W1511499728
JXAL01000010
Bacillota
Cohnella kolymensis VKM B-2846 [JXAL]
16981
16907
-
Gln
TTG
[ENA]
¡û
>W1511499746
JXAL01000013
Bacillota
Cohnella kolymensis VKM B-2846 [JXAL]
1385
1459
+
Gln
TTG
[ENA]
¡û
>C121009350
CP003235
Bacillota
Paenibacillus mucilaginosus 3016 [CP003235]
1214321
1214395
+
Gln
TTG
[Ensembl]
¡û
>C121009365
CP003235
Bacillota
Paenibacillus mucilaginosus 3016 [CP003235]
1601190
1601264
+
Gln
TTG
[Ensembl]
¡û
>C121009386
CP003235
Bacillota
Paenibacillus mucilaginosus 3016 [CP003235]
8258449
8258375
-
Gln
TTG
[Ensembl]
¡û
>C121009414
CP003235
Bacillota
Paenibacillus mucilaginosus 3016 [CP003235]
7356656
7356582
-
Gln
TTG
[Ensembl]
¡û
>C161058312
CP013653
Bacillota
Paenibacillus sp. 32O-W [CP013653]
842360
842434
+
Gln
TTG
[Ensembl]
¡û
>C161058345
CP013653
Bacillota
Paenibacillus sp. 32O-W [CP013653]
4664594
4664520
-
Gln
TTG
[Ensembl]
¡û
>W1610048266
BBEA01000012
Bacillota
Paenibacillus sp. JCM 9795 [BBEA]
773
846
+
Gln
TTG
[ENA]
¡û
>W1610048314
BBEA01000083
Bacillota
Paenibacillus sp. JCM 9795 [BBEA]
19539
19465
-
Gln
TTG
[ENA]
¡û
>W1610048321
BBEA01000089
Bacillota
Paenibacillus sp. JCM 9795 [BBEA]
75
149
+
Gln
TTG
[ENA]
¡û
>W1610048420
BBEC01000031
Bacillota
Paenibacillus sp. YK5 [BBEC]
518
591
+
Gln
TTG
[ENA]
¡û
>W1610048467
BBEC01000163
Bacillota
Paenibacillus sp. YK5 [BBEC]
282
355
+
Gln
TTG
[ENA]
¡û
>C131002434
CP003255
Bacillota
Thermobacillus composti KWC4 [CP003255]
342766
342840
+
Gln
TTG
[Ensembl]
¡û
>C131002476
CP003255
Bacillota
Thermobacillus composti KWC4 [CP003255]
3033296
3033222
-
Gln
TTG
[Ensembl]
¡û
>W1610725043
LMEO01000045
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
1397155
1397084
-
Gln
TTG
[ENA]
¡û
>W1610742190
LMRY01000011
Bacillota
Paenibacillus sp. Soil724D2 [LMRY]
272
343
+
Gln
TTG
[ENA]
¡û
>W1610742448
LMSD01000003
Bacillota
Paenibacillus sp. Soil750 [LMSD]
323
394
+
Gln
TTG
[ENA]
¡û
>W1610742856
LMSJ01000044
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
357
428
+
Gln
TTG
[ENA]
¡û
>W1611017461
LYPC01000021
Bacillota
Paenibacillus pectinilyticus [LYPC]
229
300
+
Gln
TTG
[ENA]
¡û
>W1710044776
BBEA01000012
Bacillota
Paenibacillus sp. JCM 9795 [BBEA]
773
846
+
Gln
TTG
[ENA]
¡û
>W1710044824
BBEA01000083
Bacillota
Paenibacillus sp. JCM 9795 [BBEA]
19539
19465
-
Gln
TTG
[ENA]
¡û
>W1710044831
BBEA01000089
Bacillota
Paenibacillus sp. JCM 9795 [BBEA]
75
149
+
Gln
TTG
[ENA]
¡û
>W1710044930
BBEC01000031
Bacillota
Paenibacillus sp. YK5 [BBEC]
518
591
+
Gln
TTG
[ENA]
¡û
>W1710044977
BBEC01000163
Bacillota
Paenibacillus sp. YK5 [BBEC]
282
355
+
Gln
TTG
[ENA]
¡û
>W1710523803
FNIF01000050
Bacillota
Paenibacillus sp. yr247 [FNIF]
463
534
+
Gln
TTG
[ENA]
¡û
>W1710546666
FOCJ01000005
Bacillota
Paenibacillus sp. OV219 [FOCJ]
416267
416193
-
Gln
TTG
[ENA]
¡û
>W1710546686
FOCJ01000007
Bacillota
Paenibacillus sp. OV219 [FOCJ]
1370
1444
+
Gln
TTG
[ENA]
¡û
>W1710546730
FOCJ01000012
Bacillota
Paenibacillus sp. OV219 [FOCJ]
182755
182681
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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