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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.341996 (26 seq.)
>W131218766
ATXZ01000014
Bacillota
Caldanaerobius polysaccharolyticus DSM 13641 [ATXZ]
289789
289715
-
Gly
CCC
[ENA]
¡û
>W141276492
JADV01000023
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [JADV]
199
273
+
Gly
CCC
[ENA]
¡û
>WENV170560706
CZCA01000104
[CZCA] anaerobic digester metagenome; anaerobic digester
15677
15751
+
Gly
CCC
[ENA]
¢þ
>WENV170562356
CZCB01002273
[CZCB] anaerobic digester metagenome; anaerobic digester
12220
12146
-
Gly
CCC
[ENA]
¢þ
>WENV170685845
LFRM01112042
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
12152
12078
-
Gly
CCC
[ENA]
¢þ
>WENV170717814
LSQX01050593
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
13134
13060
-
Gly
CCC
[ENA]
¢þ
>WENV170967765
MTKW01003261
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
9105
9179
+
Gly
CCC
[ENA]
¢þ
>C181021897
CP016893
Bacillota
Thermoanaerobacterium thermosaccharolyticum TG57 [CP016893]
1232994
1233068
+
Gly
CCC
-
¡û
>W09135017
ACVG01000054
Bacillota
Thermoanaerobacterium thermosaccharolyticum DSM 571 [ACVG]
12079
12005
-
Gly
CCC
[ENA]
¡û
>W09135058
ACVH01000030
Bacillota
Thermoanaerobacter italicus Ab9 [ACVH]
26952
26878
-
Gly
CCC
[ENA]
¡û
>W09135178
ACVK01000041
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [ACVK]
17494
17420
-
Gly
CCC
[ENA]
¡û
>W1910747739
MINB01000041
Bacillota
Thermoanaerobacterium thermosaccharolyticum GSU5 [MINB]
27
101
+
Gly
CCC
[ENA]
¡û
>W1910976743
NKHD01000052
Bacillota
Thermoanaerobacterium thermosaccharolyticum M5 [NKHD]
12220
12146
-
Gly
CCC
[ENA]
¡û
>C10113371
CP001936
Bacillota
Thermoanaerobacter italicus Ab9 [CP001936]
51393
51467
+
Gly
CCC
[Ensembl]
¡û
>C10113425
CP002032
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [CP002032]
109631
109705
+
Gly
CCC
[Ensembl]
¡û
>C10113814
CP002171
Bacillota
Thermoanaerobacterium thermosaccharolyticum DSM 571 [CP002171]
66864
66938
+
Gly
CCC
[Ensembl]
¡û
>C11123280
CP002739
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [CP002739]
65759
65833
+
Gly
CCC
[Ensembl]
¡û
>W11150437
AEVQ01000004
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [AEVQ]
269841
269915
+
Gly
CCC
[ENA]
¡û
>C161001956
AP014924
Bacillota
Limnochorda pilosa HC45 [AP014924]
3352997
3353071
+
Gly
CCC
[Ensembl]
¡û
>W1610043674
BAZY01000028
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
30381
30307
-
Gly
CCC
[ENA]
¡û
>C131001901
CP003066
Bacillota
Thermoanaerobacterium thermosaccharolyticum M0795 [CP003066]
52753
52827
+
Gly
CCC
[Ensembl]
¡û
>W1710040834
BAZY01000028
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
30381
30307
-
Gly
CCC
[ENA]
¡û
>W1710515317
FNBS01000033
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
413
487
+
Gly
CCC
[ENA]
¡û
>W1710560388
FONI01000052
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FONI]
411
485
+
Gly
CCC
[ENA]
¡û
>W1710584112
FQVH01000052
Bacillota
Caldanaerobius fijiensis DSM 17918 [FQVH]
9492
9418
-
Gly
CCC
[ENA]
¡û
>W1710584113
FQVH01000052
Bacillota
Caldanaerobius fijiensis DSM 17918 [FQVH]
1452
1378
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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