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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.342080 (79 seq.)
>W1711137580
LVBO01000648
Synergistota
Synergistales bacterium Syner_01 [LVBO]
1696
1770
+
Gly
GCC
[ENA]
¡û
>W1711629539
MPPC01000004
Synergistota
Aminobacterium sp. EBM-42 [MPPC]
80580
80506
-
Gly
GCC
[ENA]
¡û
>W1711744481
MUHX01000001
Synergistota
Pyramidobacter sp. C12-8 [MUHX]
44556
44482
-
Gly
GCC
[ENA]
¡û
>W1711744511
MUHX01000030
Synergistota
Pyramidobacter sp. C12-8 [MUHX]
5075
5149
+
Gly
GCC
[ENA]
¡û
>W1712039356
NFJQ01000002
Synergistota
Cloacibacillus sp. An23 [NFJQ]
128406
128480
+
Gly
GCC
[ENA]
¡û
>W1712039358
NFJQ01000002
Synergistota
Cloacibacillus sp. An23 [NFJQ]
128616
128690
+
Gly
GCC
[ENA]
¡û
>C171050542
CP016757
Synergistota
Cloacibacillus porcorum CL-84 [CP016757]
1584626
1584700
+
Gly
GCC
-
¡û
>C173000808
CP016757
Synergistota
Cloacibacillus porcorum CL-84 [CP016757]
1584310
1584384
+
Gly
GCC
-
¡û
>W131157318
AQRZ01000027
Synergistota
Synergistetes bacterium JGI 0000079-D21 [AQRZ]
1022
948
-
Gly
GCC
[ENA]
¡û
>WENV180001138
FLNX01000065
[FLNX] bioreactor metagenome; Moose rumen
68257
68183
-
Gly
GCC
[ENA]
¢þ
>WENV180098189
MTBK01232328
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
5099
5173
+
Gly
GCC
[ENA]
¢þ
>WENV180224021
OBBI01024341
[OBBI] human gut metagenome; human gut
283
357
+
Gly
GCC
[ENA]
¢þ
>WENV180332719
OBLD01110850
[OBLD] metagenome; water
67
141
+
Gly
GCC
[ENA]
¢þ
>WENV180623448
OCQE01046809
[OCQE] human gut metagenome; human gut
63
137
+
Gly
GCC
[ENA]
¢þ
>WENV180798267
ODJB01395610
[ODJB] human metagenome; G_DNA_Supragingival plaque
65
139
+
Gly
GCC
[ENA]
¢þ
>WENV180944646
ODUC01027292
[ODUC] human metagenome; G_DNA_Supragingival plaque
399
473
+
Gly
GCC
[ENA]
¢þ
>WENV180982200
ODVE01207816
[ODVE] human metagenome; G_DNA_Supragingival plaque
105
31
-
Gly
GCC
[ENA]
¢þ
>WENV181050712
ODYD01045969
[ODYD] human metagenome; G_DNA_Supragingival plaque
417
491
+
Gly
GCC
[ENA]
¢þ
>WENV181077626
OEAP01093315
[OEAP] human metagenome; G_DNA_Supragingival plaque
266
340
+
Gly
GCC
[ENA]
¢þ
>WENV181230277
OFEK01000582
[OFEK] activated sludge metagenome; Anaerobic digester
25362
25436
+
Gly
GCC
[ENA]
¢þ
>WENV181409530
OGCI01000259
[OGCI] hot springs metagenome; Hot spring water
56889
56815
-
Gly
GCC
[ENA]
¢þ
>WENV181989406
OHAO01008638
[OHAO] human gut metagenome; faeces
3759
3833
+
Gly
GCC
[ENA]
¢þ
>WENV182031201
OHCS01005330
[OHCS] human gut metagenome; feces
3099
3025
-
Gly
GCC
[ENA]
¢þ
>WENV182180633
OHNO01004625
[OHNO] human gut metagenome; feces
3498
3424
-
Gly
GCC
[ENA]
¢þ
>WENV182212623
OHQG01002449
[OHQG] human gut metagenome; feces
3041
3115
+
Gly
GCC
[ENA]
¢þ
>WENV182216035
OHQM01013743
[OHQM] human gut metagenome; feces
930
856
-
Gly
GCC
[ENA]
¢þ
>W141279029
JAFZ01000004
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
84775
84701
-
Gly
GCC
[ENA]
¡û
>WENV182886081
OKSC01094251
[OKSC] human gut metagenome; faeces
564
490
-
Gly
GCC
[ENA]
¢þ
>WENV183484451
OMFO01054262
[OMFO] human gut metagenome; feces
338
412
+
Gly
GCC
[ENA]
¢þ
>WENV183514100
OMKS01011869
[OMKS] sediment metagenome; hot spring sediment
4309
4235
-
Gly
GCC
[ENA]
¢þ
>WENV183712691
PDWI01110266
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
21
95
+
Gly
GCC
[ENA]
¢þ
>WENV183712738
PDWI01111976
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
79
5
-
Gly
GCC
[ENA]
¢þ
>WENV183716813
PDWJ01000207
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
8181
8255
+
Gly
GCC
[ENA]
¢þ
>WENV183717328
PDWJ01000740
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
23475
23549
+
Gly
GCC
[ENA]
¢þ
>WENV183763914
PPYE01311215
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
85
159
+
Gly
GCC
[ENA]
¢þ
>WENV183763930
PPYE01311245
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
165
239
+
Gly
GCC
[ENA]
¢þ
>WENV170008229
AMZC01005281
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
1445
1519
+
Gly
GCC
[ENA]
¢þ
>WENV170563777
CZCB01028987
[CZCB] anaerobic digester metagenome; anaerobic digester
7013
6939
-
Gly
GCC
[ENA]
¢þ
>WENV170655930
JTFN01097194
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
264
190
-
Gly
GCC
[ENA]
¢þ
>WENV170656588
JTFO01026602
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
95
169
+
Gly
GCC
[ENA]
¢þ
>WENV170656687
JTFO01033476
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
462
388
-
Gly
GCC
[ENA]
¢þ
>WENV170657432
JTFO01149364
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
71
145
+
Gly
GCC
[ENA]
¢þ
>WENV170676942
LDZS01003283
[LDZS] terrestrial metagenome; oil reservoir sample K3
4447
4521
+
Gly
GCC
[ENA]
¢þ
>WENV170684593
LFRM01047651
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2780
2706
-
Gly
GCC
[ENA]
¢þ
>WENV170968678
MTKW01012995
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
293
219
-
Gly
GCC
[ENA]
¢þ
>WENV170972402
MTKX01029124
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
21262
21336
+
Gly
GCC
[ENA]
¢þ
>WENV170974161
MTKY01054733
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
19428
19502
+
Gly
GCC
[ENA]
¢þ
>WENV170974273
MTKY01056430
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
5030
5104
+
Gly
GCC
[ENA]
¢þ
>WENV170976295
MTKZ01006422
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
135643
135717
+
Gly
GCC
[ENA]
¢þ
>W09108894
ABTR01000001
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
416779
416705
-
Gly
GCC
[ENA]
¡û
>W09108933
ABTR01000024
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
9794
9720
-
Gly
GCC
[ENA]
¡û
>W09110116
ABUW01000002
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [ABUW]
10888
10962
+
Gly
GCC
[ENA]
¡û
>W09126630
ACJX01000176
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
14907
14833
-
Gly
GCC
[ENA]
¡û
>W141701186
JMKI01000002
Synergistota
Synergistes jonesii [JMKI]
14794
14868
+
Gly
GCC
[ENA]
¡û
>W143011530
JFBR01000002
Synergistota
Cloacibacillus evryensis DSM 19522 [JFBR]
209336
209410
+
Gly
GCC
[ENA]
¡û
>W10113031
ADFP01000082
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
28321
28247
-
Gly
GCC
[ENA]
¡û
>W10113035
ADFP01000084
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
5029
5103
+
Gly
GCC
[ENA]
¡û
>C10100299
CP001997
Synergistota
Aminobacterium colombiense DSM 12261 [CP001997]
337322
337396
+
Gly
GCC
[Ensembl]
¡û
>C10113000
CP001818
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [CP001818]
1573147
1573073
-
Gly
GCC
[Ensembl]
¡û
>W11116258
ADFP01000082
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
28321
28247
-
Gly
GCC
[ENA]
¡û
>W11116262
ADFP01000084
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
5029
5103
+
Gly
GCC
[ENA]
¡û
>W11138620
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
707291
707217
-
Gly
GCC
[ENA]
¡û
>C121008049
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
217026
217100
+
Gly
GCC
[Ensembl]
¡û
>C161104050
FP929056
Synergistota
Fretibacterium fastidiosum SGP1 [FP929056]
945246
945172
-
Gly
GCC
-
¡û
>W121031613
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
297327
297401
+
Gly
GCC
[ENA]
¡û
>W123000011
ACUH01000050
Synergistota
Synergistes sp. 3_1_syn1 [ACUH]
10400
10474
+
Gly
GCC
[ENA]
¡û
>W123000012
ACUH01000050
Synergistota
Synergistes sp. 3_1_syn1 [ACUH]
10719
10793
+
Gly
GCC
[ENA]
¡û
>W1610613310
LGFQ01000103
Synergistota
Synergistales bacterium 54_24 [LGFQ]
4447
4521
+
Gly
GCC
[ENA]
¡û
>W1610948700
LVBO01000648
Synergistota
Synergistales bacterium Syner_01 [LVBO]
1696
1770
+
Gly
GCC
[ENA]
¡û
>W1710530852
FNPD01000014
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
32478
32404
-
Gly
GCC
[ENA]
¡û
>W1710594078
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
854704
854630
-
Gly
GCC
[ENA]
¡û
>W1710608686
FXBB01000002
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
123339
123265
-
Gly
GCC
[ENA]
¡û
>W1710608705
FXBB01000019
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
5621
5695
+
Gly
GCC
[ENA]
¡û
>W1710629229
JPZQ01000001
Synergistota
Synergistes jonesii [JPZQ]
12751
12825
+
Gly
GCC
[ENA]
¡û
>W1710629272
JPZR01000001
Synergistota
Synergistes jonesii [JPZR]
12751
12825
+
Gly
GCC
[ENA]
¡û
>W1710629315
JPZS01000001
Synergistota
Synergistes jonesii [JPZS]
12751
12825
+
Gly
GCC
[ENA]
¡û
>W1710631855
JQEK01000047
Synergistota
Synergistes jonesii [JQEK]
172074
172000
-
Gly
GCC
[ENA]
¡û
>W1710631863
JQEL01000001
Synergistota
Synergistes jonesii [JQEL]
12751
12825
+
Gly
GCC
[ENA]
¡û
>W1710734517
LGFQ01000103
Synergistota
Synergistales bacterium 54_24 [LGFQ]
4447
4521
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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