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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.342241 (20 seq.)
>W1711502915
MKTD01000041
Bacteroidota
Bacteroidia bacterium 43-41 [MKTD]
3637
3561
-
Asn
GTT
[ENA]
¡û
>W1711502916
MKTD01000041
Bacteroidota
Bacteroidia bacterium 43-41 [MKTD]
3530
3454
-
Asn
GTT
[ENA]
¡û
>C171129289
LT608328
Bacteroidota
Petrimonas mucosa ING2-E5A [LT608328]
1441775
1441849
+
Asn
GTT
-
¡û
>C171129290
LT608328
Bacteroidota
Petrimonas mucosa ING2-E5A [LT608328]
1441879
1441953
+
Asn
GTT
-
¡û
>WENV181230703
OFEK01002462
[OFEK] activated sludge metagenome; Anaerobic digester
1346
1272
-
Asn
GTT
[ENA]
¡û
>WENV181230704
OFEK01002462
[OFEK] activated sludge metagenome; Anaerobic digester
1239
1165
-
Asn
GTT
[ENA]
¡û
>WENV170643676
JMBV01000087
[JMBV] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
13810
13736
-
Asn
GTT
[ENA]
¡û
>WENV170643677
JMBV01000087
[JMBV] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
13704
13628
-
Asn
GTT
[ENA]
¡û
>WENV170644369
JMBW01008405
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
939
863
-
Asn
GTT
[ENA]
¡û
>WENV170644960
JMBX01000406
[JMBX] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
80
6
-
Asn
GTT
[ENA]
¡û
>WENV170645013
JMBX01001012
[JMBX] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
1
77
+
Asn
GTT
[ENA]
¡û
>WENV170685112
LFRM01073316
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1758
1682
-
Asn
GTT
[ENA]
¡û
>WENV170967125
MTKW01000319
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
4103
4029
-
Asn
GTT
[ENA]
¡û
>WENV170967126
MTKW01000319
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
3999
3925
-
Asn
GTT
[ENA]
¡û
>C181004294
AP018040
Bacteroidota
Petrimonas sp. IBARAKI [AP018040]
1343950
1344024
+
Asn
GTT
-
¡û
>C181004295
AP018040
Bacteroidota
Petrimonas sp. IBARAKI [AP018040]
1344057
1344131
+
Asn
GTT
-
¡û
>C231131275
CP073586
Bacteroidota
Proteiniphilum propionicum JNU-WLY501 [CP073586]
3337103
3337029
-
Asn
GTT
-
¡û
>C231131276
CP073586
Bacteroidota
Proteiniphilum propionicum JNU-WLY501 [CP073586]
3336997
3336923
-
Asn
GTT
-
¡û
>W1710578555
FPBR01000004
Bacteroidota
Porphyromonadaceae bacterium KHP3R9 [FPBR]
15708
15782
+
Asn
GTT
[ENA]
¡û
>W1710578556
FPBR01000004
Bacteroidota
Porphyromonadaceae bacterium KHP3R9 [FPBR]
15812
15886
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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