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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.342487 (119 seq.)
>W1712109145
NJFC01000001
Campylobacterota
Helicobacter pylori [NJFC]
1017880
1017955
+
Ala
GGC
[ENA]
¡û
>W131105848
APEE01000065
Campylobacterota
Helicobacter pylori GAM83Bi [APEE]
69526
69601
+
Ala
GGC
[ENA]
¡û
>W131105882
APEF01000075
Campylobacterota
Helicobacter pylori GAM83T [APEF]
25855
25780
-
Ala
GGC
[ENA]
¡û
>C010882
AE000511
Campylobacterota
Helicobacter pylori 26695 [AE000511]
261560
261485
-
Ala
GGC
-
¡û
>WENV180233381
OBCP01000421
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
5571
5646
+
Ala
GGC
[ENA]
¢þ
>WENV180569817
OCLR01000508
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
5571
5646
+
Ala
GGC
[ENA]
¢þ
>WENV180570764
OCLS01000513
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
5571
5646
+
Ala
GGC
[ENA]
¢þ
>WENV180571756
OCLT01000410
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
5571
5646
+
Ala
GGC
[ENA]
¢þ
>WENV180574005
OCLW01000424
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
5571
5646
+
Ala
GGC
[ENA]
¢þ
>WENV180639887
OCRL01000198
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
69456
69531
+
Ala
GGC
[ENA]
¢þ
>WENV180640813
OCRM01000206
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
69456
69531
+
Ala
GGC
[ENA]
¢þ
>W141103000
AVNI01000002
Campylobacterota
Helicobacter pylori SouthAfrica50 [AVNI]
883850
883925
+
Ala
GGC
[ENA]
¡û
>W141248676
CBNK010000006
Campylobacterota
Helicobacter pylori SA194A [CBNK]
68326
68401
+
Ala
GGC
[ENA]
¡û
>W141249152
CBNY010000006
Campylobacterota
Helicobacter pylori SA34C [CBNY]
8119
8194
+
Ala
GGC
[ENA]
¡û
>W141249316
CBOD010000001
Campylobacterota
Helicobacter pylori SA46C [CBOD]
202770
202845
+
Ala
GGC
[ENA]
¡û
>W141249486
CBOI010000001
Campylobacterota
Helicobacter pylori SA175C [CBOI]
320651
320576
-
Ala
GGC
[ENA]
¡û
>W141249555
CBOK010000001
Campylobacterota
Helicobacter pylori SA169C [CBOK]
48191
48116
-
Ala
GGC
[ENA]
¡û
>W141249806
CBOR010000006
Campylobacterota
Helicobacter pylori SA253C [CBOR]
70302
70377
+
Ala
GGC
[ENA]
¡û
>W141249862
CBOT010000002
Campylobacterota
Helicobacter pylori SA47A [CBOT]
198655
198580
-
Ala
GGC
[ENA]
¡û
>W141250313
CBPG010000006
Campylobacterota
Helicobacter pylori SA172C [CBPG]
69985
70060
+
Ala
GGC
[ENA]
¡û
>W141250574
CBPO010000001
Campylobacterota
Helicobacter pylori SA175A [CBPO]
69964
70039
+
Ala
GGC
[ENA]
¡û
>W141250713
CBPS010000003
Campylobacterota
Helicobacter pylori SA174A [CBPS]
36884
36959
+
Ala
GGC
[ENA]
¡û
>W141250866
CBPW010000005
Campylobacterota
Helicobacter pylori SA194A [CBPW]
68069
68144
+
Ala
GGC
[ENA]
¡û
>W141251249
CBQH010000049
Campylobacterota
Helicobacter pylori SA169A [CBQH]
8960
9035
+
Ala
GGC
[ENA]
¡û
>W141251437
CBQN010000007
Campylobacterota
Helicobacter pylori SA160A [CBQN]
69790
69865
+
Ala
GGC
[ENA]
¡û
>C181130599
CP026323
Campylobacterota
Helicobacter pylori 26695-dRdM1dM2 [CP026323]
261602
261527
-
Ala
GGC
-
¡û
>C181130633
CP026324
Campylobacterota
Helicobacter pylori 26695-dRdM2 [CP026324]
261603
261528
-
Ala
GGC
-
¡û
>C181130701
CP026326
Campylobacterota
Helicobacter pylori 26695-dR [CP026326]
261608
261533
-
Ala
GGC
-
¡û
>C181134271
CP026515
Campylobacterota
Helicobacter pylori dRdM2addM2 [CP026515]
261621
261546
-
Ala
GGC
-
¡û
>C191090254
CP032471
Campylobacterota
Helicobacter pylori 479-C2-EK2 [CP032471]
1268510
1268585
+
Ala
GGC
-
¡û
>C191097002
CP032898
Campylobacterota
Helicobacter pylori 479-C-EK2 [CP032898]
1268181
1268256
+
Ala
GGC
-
¡û
>C141006938
CP006691
Campylobacterota
Helicobacter pylori SouthAfrica20 [CP006691]
260209
260134
-
Ala
GGC
[Ensembl]
¡û
>W1910549682
FZPM01000025
Campylobacterota
Helicobacter aurati [FZPM]
68404
68479
+
Ala
GGC
[ENA]
¡û
>W1910660780
MBJB01000035
Campylobacterota
Helicobacter pylori 2036 [MBJB]
24822
24747
-
Ala
GGC
[ENA]
¡û
>W1910756303
MLAT01000007
Campylobacterota
Helicobacter sp. 13S00482-2 [MLAT]
5367
5292
-
Ala
GGC
[ENA]
¡û
>W1910819813
MVWF01000007
Campylobacterota
Helicobacter pylori HP13005 [MVWF]
70847
70922
+
Ala
GGC
[ENA]
¡û
>W1910820156
MVWP01000004
Campylobacterota
Helicobacter pylori HP12054 [MVWP]
69625
69700
+
Ala
GGC
[ENA]
¡û
>W1910820595
MVXC01000007
Campylobacterota
Helicobacter pylori HP11042 [MVXC]
25920
25845
-
Ala
GGC
[ENA]
¡û
>W1810046763
NXLW01000006
Campylobacterota
Helicobacter aurati MIT 97-5075 [NXLW]
63953
64028
+
Ala
GGC
[ENA]
¡û
>C151001478
AP013354
Campylobacterota
Helicobacter pylori 26695-1 [AP013354]
261512
261437
-
Ala
GGC
-
¡û
>C151001546
AP013356
Campylobacterota
Helicobacter pylori 26695-1CL [AP013356]
261514
261439
-
Ala
GGC
-
¡û
>C151068954
CP010436
Campylobacterota
Helicobacter pylori 26695-1MET [CP010436]
261513
261438
-
Ala
GGC
[Ensembl]
¡û
>W1511390430
JSXX01000005
Campylobacterota
Helicobacter pylori 173/00 [JSXX]
21284
21209
-
Ala
GGC
[ENA]
¡û
>C131009626
CP003905
Campylobacterota
Helicobacter pylori Rif1 [CP003905]
261562
261487
-
Ala
GGC
[Ensembl]
¡û
>W1610501739
FLKK01000019
Campylobacterota
Helicobacter pylori [FLKK]
69665
69740
+
Ala
GGC
[ENA]
¡û
>W1610504126
FLOJ01000006
Campylobacterota
Helicobacter pylori [FLOJ]
69652
69727
+
Ala
GGC
[ENA]
¡û
>W1610504158
FLOK01000005
Campylobacterota
Helicobacter pylori [FLOK]
69648
69723
+
Ala
GGC
[ENA]
¡û
>W1610504256
FLON01000004
Campylobacterota
Helicobacter pylori [FLON]
69392
69467
+
Ala
GGC
[ENA]
¡û
>W1610504295
FLOO01000005
Campylobacterota
Helicobacter pylori [FLOO]
69679
69754
+
Ala
GGC
[ENA]
¡û
>W1610504375
FLOQ01000015
Campylobacterota
Helicobacter pylori [FLOQ]
71499
71574
+
Ala
GGC
[ENA]
¡û
>W1610504404
FLOR01000014
Campylobacterota
Helicobacter pylori [FLOR]
24504
24429
-
Ala
GGC
[ENA]
¡û
>W1610504459
FLOT01000005
Campylobacterota
Helicobacter pylori [FLOT]
69938
70013
+
Ala
GGC
[ENA]
¡û
>W1610504509
FLOU01000013
Campylobacterota
Helicobacter pylori [FLOU]
24504
24429
-
Ala
GGC
[ENA]
¡û
>W1610504634
FLOY01000012
Campylobacterota
Helicobacter pylori [FLOY]
69661
69736
+
Ala
GGC
[ENA]
¡û
>W1610504737
FLPB01000007
Campylobacterota
Helicobacter pylori [FLPB]
69915
69990
+
Ala
GGC
[ENA]
¡û
>W1610504776
FLPC01000012
Campylobacterota
Helicobacter pylori [FLPC]
69663
69738
+
Ala
GGC
[ENA]
¡û
>W1610504813
FLPD01000012
Campylobacterota
Helicobacter pylori [FLPD]
129999
129924
-
Ala
GGC
[ENA]
¡û
>W1610504869
FLPF01000004
Campylobacterota
Helicobacter pylori [FLPF]
24503
24428
-
Ala
GGC
[ENA]
¡û
>W1610504951
FLPH01000009
Campylobacterota
Helicobacter pylori [FLPH]
69664
69739
+
Ala
GGC
[ENA]
¡û
>W1610505029
FLPJ01000027
Campylobacterota
Helicobacter pylori [FLPJ]
69664
69739
+
Ala
GGC
[ENA]
¡û
>W1610505048
FLPK01000007
Campylobacterota
Helicobacter pylori [FLPK]
69663
69738
+
Ala
GGC
[ENA]
¡û
>W1610505082
FLPL01000017
Campylobacterota
Helicobacter pylori [FLPL]
69980
70055
+
Ala
GGC
[ENA]
¡û
>W1610505104
FLPM01000002
Campylobacterota
Helicobacter pylori [FLPM]
69664
69739
+
Ala
GGC
[ENA]
¡û
>W1610505143
FLPN01000006
Campylobacterota
Helicobacter pylori [FLPN]
69654
69729
+
Ala
GGC
[ENA]
¡û
>W1610505175
FLPO01000005
Campylobacterota
Helicobacter pylori [FLPO]
69664
69739
+
Ala
GGC
[ENA]
¡û
>W1610505214
FLPP01000010
Campylobacterota
Helicobacter pylori [FLPP]
69640
69715
+
Ala
GGC
[ENA]
¡û
>W1610505252
FLPQ01000008
Campylobacterota
Helicobacter pylori [FLPQ]
69639
69714
+
Ala
GGC
[ENA]
¡û
>W1610505276
FLPR01000004
Campylobacterota
Helicobacter pylori [FLPR]
24510
24435
-
Ala
GGC
[ENA]
¡û
>W1610505321
FLPS01000012
Campylobacterota
Helicobacter pylori [FLPS]
69664
69739
+
Ala
GGC
[ENA]
¡û
>W1610505445
FLPW01000003
Campylobacterota
Helicobacter pylori [FLPW]
69664
69739
+
Ala
GGC
[ENA]
¡û
>W1610505572
FLPZ01000019
Campylobacterota
Helicobacter pylori [FLPZ]
69665
69740
+
Ala
GGC
[ENA]
¡û
>W1610505605
FLQA01000013
Campylobacterota
Helicobacter pylori [FLQA]
24505
24430
-
Ala
GGC
[ENA]
¡û
>W1610505645
FLQB01000025
Campylobacterota
Helicobacter pylori [FLQB]
69665
69740
+
Ala
GGC
[ENA]
¡û
>W1610505670
FLQC01000023
Campylobacterota
Helicobacter pylori [FLQC]
24504
24429
-
Ala
GGC
[ENA]
¡û
>W1610505707
FLQD01000017
Campylobacterota
Helicobacter pylori [FLQD]
69956
70031
+
Ala
GGC
[ENA]
¡û
>W1610505733
FLQE01000012
Campylobacterota
Helicobacter pylori [FLQE]
24504
24429
-
Ala
GGC
[ENA]
¡û
>W1610505768
FLQF01000021
Campylobacterota
Helicobacter pylori [FLQF]
24504
24429
-
Ala
GGC
[ENA]
¡û
>W1610505815
FLQG01000023
Campylobacterota
Helicobacter pylori [FLQG]
69664
69739
+
Ala
GGC
[ENA]
¡û
>W1610505869
FLQI01000002
Campylobacterota
Helicobacter pylori [FLQI]
24504
24429
-
Ala
GGC
[ENA]
¡û
>W1610506066
FLQN01000017
Campylobacterota
Helicobacter pylori [FLQN]
69665
69740
+
Ala
GGC
[ENA]
¡û
>W1610506094
FLQO01000019
Campylobacterota
Helicobacter pylori [FLQO]
24506
24431
-
Ala
GGC
[ENA]
¡û
>W1710029483
AZBP01000036
Campylobacterota
Helicobacter pylori SS1 [AZBP]
70439
70514
+
Ala
GGC
[ENA]
¡û
>W1710495209
FLKK01000019
Campylobacterota
Helicobacter pylori [FLKK]
69665
69740
+
Ala
GGC
[ENA]
¡û
>W1710496875
FLOJ01000006
Campylobacterota
Helicobacter pylori [FLOJ]
69652
69727
+
Ala
GGC
[ENA]
¡û
>W1710496907
FLOK01000005
Campylobacterota
Helicobacter pylori [FLOK]
69648
69723
+
Ala
GGC
[ENA]
¡û
>W1710497005
FLON01000004
Campylobacterota
Helicobacter pylori [FLON]
69392
69467
+
Ala
GGC
[ENA]
¡û
>W1710497044
FLOO01000005
Campylobacterota
Helicobacter pylori [FLOO]
69679
69754
+
Ala
GGC
[ENA]
¡û
>W1710497124
FLOQ01000015
Campylobacterota
Helicobacter pylori [FLOQ]
71499
71574
+
Ala
GGC
[ENA]
¡û
>W1710497153
FLOR01000014
Campylobacterota
Helicobacter pylori [FLOR]
24504
24429
-
Ala
GGC
[ENA]
¡û
>W1710497208
FLOT01000005
Campylobacterota
Helicobacter pylori [FLOT]
69938
70013
+
Ala
GGC
[ENA]
¡û
>W1710497258
FLOU01000013
Campylobacterota
Helicobacter pylori [FLOU]
24504
24429
-
Ala
GGC
[ENA]
¡û
>W1710497383
FLOY01000012
Campylobacterota
Helicobacter pylori [FLOY]
69661
69736
+
Ala
GGC
[ENA]
¡û
>W1710497486
FLPB01000007
Campylobacterota
Helicobacter pylori [FLPB]
69915
69990
+
Ala
GGC
[ENA]
¡û
>W1710497525
FLPC01000012
Campylobacterota
Helicobacter pylori [FLPC]
69663
69738
+
Ala
GGC
[ENA]
¡û
>W1710497562
FLPD01000012
Campylobacterota
Helicobacter pylori [FLPD]
129999
129924
-
Ala
GGC
[ENA]
¡û
>W1710497618
FLPF01000004
Campylobacterota
Helicobacter pylori [FLPF]
24503
24428
-
Ala
GGC
[ENA]
¡û
>W1710497700
FLPH01000009
Campylobacterota
Helicobacter pylori [FLPH]
69664
69739
+
Ala
GGC
[ENA]
¡û
>W1710497778
FLPJ01000027
Campylobacterota
Helicobacter pylori [FLPJ]
69664
69739
+
Ala
GGC
[ENA]
¡û
>W1710497797
FLPK01000007
Campylobacterota
Helicobacter pylori [FLPK]
69663
69738
+
Ala
GGC
[ENA]
¡û
>W1710497831
FLPL01000017
Campylobacterota
Helicobacter pylori [FLPL]
69980
70055
+
Ala
GGC
[ENA]
¡û
>W1710497853
FLPM01000002
Campylobacterota
Helicobacter pylori [FLPM]
69664
69739
+
Ala
GGC
[ENA]
¡û
>W1710497892
FLPN01000006
Campylobacterota
Helicobacter pylori [FLPN]
69654
69729
+
Ala
GGC
[ENA]
¡û
>W1710497924
FLPO01000005
Campylobacterota
Helicobacter pylori [FLPO]
69664
69739
+
Ala
GGC
[ENA]
¡û
>W1710497963
FLPP01000010
Campylobacterota
Helicobacter pylori [FLPP]
69640
69715
+
Ala
GGC
[ENA]
¡û
>W1710498001
FLPQ01000008
Campylobacterota
Helicobacter pylori [FLPQ]
69639
69714
+
Ala
GGC
[ENA]
¡û
>W1710498025
FLPR01000004
Campylobacterota
Helicobacter pylori [FLPR]
24510
24435
-
Ala
GGC
[ENA]
¡û
>W1710498070
FLPS01000012
Campylobacterota
Helicobacter pylori [FLPS]
69664
69739
+
Ala
GGC
[ENA]
¡û
>W1710498194
FLPW01000003
Campylobacterota
Helicobacter pylori [FLPW]
69664
69739
+
Ala
GGC
[ENA]
¡û
>W1710498321
FLPZ01000019
Campylobacterota
Helicobacter pylori [FLPZ]
69665
69740
+
Ala
GGC
[ENA]
¡û
>W1710498354
FLQA01000013
Campylobacterota
Helicobacter pylori [FLQA]
24505
24430
-
Ala
GGC
[ENA]
¡û
>W1710498394
FLQB01000025
Campylobacterota
Helicobacter pylori [FLQB]
69665
69740
+
Ala
GGC
[ENA]
¡û
>W1710498419
FLQC01000023
Campylobacterota
Helicobacter pylori [FLQC]
24504
24429
-
Ala
GGC
[ENA]
¡û
>W1710498456
FLQD01000017
Campylobacterota
Helicobacter pylori [FLQD]
69956
70031
+
Ala
GGC
[ENA]
¡û
>W1710498482
FLQE01000012
Campylobacterota
Helicobacter pylori [FLQE]
24504
24429
-
Ala
GGC
[ENA]
¡û
>W1710498517
FLQF01000021
Campylobacterota
Helicobacter pylori [FLQF]
24504
24429
-
Ala
GGC
[ENA]
¡û
>W1710498564
FLQG01000023
Campylobacterota
Helicobacter pylori [FLQG]
69664
69739
+
Ala
GGC
[ENA]
¡û
>W1710498618
FLQI01000002
Campylobacterota
Helicobacter pylori [FLQI]
24504
24429
-
Ala
GGC
[ENA]
¡û
>W1710498815
FLQN01000017
Campylobacterota
Helicobacter pylori [FLQN]
69665
69740
+
Ala
GGC
[ENA]
¡û
>W1710498843
FLQO01000019
Campylobacterota
Helicobacter pylori [FLQO]
24506
24431
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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