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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.342515 (59 seq.)
>W1711666563
MRCB01000052
Cyanobacteriota
Hydrococcus rivularis NIES-593 [MRCB]
13844
13915
+
Asn
GTT
[ENA]
¡û
>w021643
AAVU01000044
Cyanobacteriota
Lyngbya sp. PCC 8106 [AAVU]
2067
2141
+
Asn
GTT
[ENA]
¡û
>W141004281
AFXD01000004
Cyanobacteriota
Arthrospira platensis C1 [AFXD]
28614
28541
-
Asn
GTT
[ENA]
¡û
>W141051290
AMZV01000002
Cyanobacteriota
Synechocystis sp. PCC 6714 [AMZV]
55556
55485
-
Asn
GTT
[ENA]
¡û
>W141091968
AUZM01000108
Cyanobacteriota
Lyngbya aestuarii BL J [AUZM]
2499
2570
+
Asn
GTT
[ENA]
¡û
>WENV170333240
CESY01020361
[CESY] marine metagenome genome assembly TARA_098_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
420
494
+
Asn
GTT
[ENA]
¢þ
>CHL1810001778
FJ556581
Viridiplantae
Alsophila spinulosa (FJ556581)
132746
132819
+
Asn
GTT
[ENA]
¡û
>CHL1810001782
FJ556581
Viridiplantae
Alsophila spinulosa (FJ556581)
110224
110151
-
Asn
GTT
[ENA]
¡û
>CHL1810021480
KT599100
Viridiplantae
Cyrtomium devexiscapulae (KT599100)
128395
128468
+
Asn
GTT
[ENA]
¡û
>CHL1810021484
KT599100
Viridiplantae
Cyrtomium devexiscapulae (KT599100)
105743
105670
-
Asn
GTT
[ENA]
¡û
>CHL1810021503
KT599101
Viridiplantae
Woodwardia unigemmata (KT599101)
129322
129395
+
Asn
GTT
[ENA]
¡û
>CHL1810021507
KT599101
Viridiplantae
Woodwardia unigemmata (KT599101)
106783
106710
-
Asn
GTT
[ENA]
¡û
>CHL1810041196
KY427331
Viridiplantae
Asplenium pekinense (KY427331)
128196
128269
+
Asn
GTT
[ENA]
¡û
>CHL1810041200
KY427331
Viridiplantae
Asplenium pekinense (KY427331)
105708
105635
-
Asn
GTT
[ENA]
¡û
>CHL1810041219
KY427332
Viridiplantae
Asplenium prolongatum (KY427332)
127628
127701
+
Asn
GTT
[ENA]
¡û
>CHL1810041223
KY427332
Viridiplantae
Asplenium prolongatum (KY427332)
105134
105061
-
Asn
GTT
[ENA]
¡û
>CHL1810041242
KY427333
Viridiplantae
Athyrium sinense (KY427333)
128230
128303
+
Asn
GTT
[ENA]
¡û
>CHL1810041246
KY427333
Viridiplantae
Athyrium sinense (KY427333)
105540
105467
-
Asn
GTT
[ENA]
¡û
>CHL1810041265
KY427334
Viridiplantae
Austroblechnum melanocaulon (KY427334)
127646
127719
+
Asn
GTT
[ENA]
¡û
>CHL1810041269
KY427334
Viridiplantae
Austroblechnum melanocaulon (KY427334)
105123
105050
-
Asn
GTT
[ENA]
¡û
>CHL1810041288
KY427335
Viridiplantae
Athyrium opacum (KY427335)
128001
128074
+
Asn
GTT
[ENA]
¡û
>CHL1810041292
KY427335
Viridiplantae
Athyrium opacum (KY427335)
105322
105249
-
Asn
GTT
[ENA]
¡û
>CHL1810041333
KY427337
Viridiplantae
Cystopteris chinensis (KY427337)
128216
128289
+
Asn
GTT
[ENA]
¡û
>CHL1810041337
KY427337
Viridiplantae
Cystopteris chinensis (KY427337)
105682
105609
-
Asn
GTT
[ENA]
¡û
>CHL1810041379
KY427339
Viridiplantae
Deparia pycnosora (KY427339)
128183
128256
+
Asn
GTT
[ENA]
¡û
>CHL1810041383
KY427339
Viridiplantae
Deparia pycnosora (KY427339)
105503
105430
-
Asn
GTT
[ENA]
¡û
>CHL1810041471
KY427343
Viridiplantae
Diplazium bellum (KY427343)
128419
128492
+
Asn
GTT
[ENA]
¡û
>CHL1810041475
KY427343
Viridiplantae
Diplazium bellum (KY427343)
105666
105593
-
Asn
GTT
[ENA]
¡û
>CHL1810041494
KY427344
Viridiplantae
Diplazium dilatatum (KY427344)
128127
128200
+
Asn
GTT
[ENA]
¡û
>CHL1810041498
KY427344
Viridiplantae
Diplazium dilatatum (KY427344)
105399
105326
-
Asn
GTT
[ENA]
¡û
>CHL1810041517
KY427345
Viridiplantae
Diplazium dushanense (KY427345)
127614
127687
+
Asn
GTT
[ENA]
¡û
>CHL1810041521
KY427345
Viridiplantae
Diplazium dushanense (KY427345)
104978
104905
-
Asn
GTT
[ENA]
¡û
>CHL1810041540
KY427346
Viridiplantae
Diplazium striatum (KY427346)
127756
127829
+
Asn
GTT
[ENA]
¡û
>CHL1810041544
KY427346
Viridiplantae
Diplazium striatum (KY427346)
105008
104935
-
Asn
GTT
[ENA]
¡û
>CHL1810041583
KY427348
Viridiplantae
Dryopteris decipiens (KY427348)
128044
128117
+
Asn
GTT
[ENA]
¡û
>CHL1810041587
KY427348
Viridiplantae
Dryopteris decipiens (KY427348)
105406
105333
-
Asn
GTT
[ENA]
¡û
>CHL1810041698
KY427353
Viridiplantae
Matteuccia struthiopteris (KY427353)
127814
127887
+
Asn
GTT
[ENA]
¡û
>CHL1810041702
KY427353
Viridiplantae
Matteuccia struthiopteris (KY427353)
105154
105081
-
Asn
GTT
[ENA]
¡û
>CHL1810041744
KY427355
Viridiplantae
Pseudophegopteris aurita (KY427355)
127178
127251
+
Asn
GTT
[ENA]
¡û
>CHL1810041748
KY427355
Viridiplantae
Pseudophegopteris aurita (KY427355)
104802
104729
-
Asn
GTT
[ENA]
¡û
>CHL1810041767
KY427356
Viridiplantae
Rhachidosorus consimilis (KY427356)
129286
129359
+
Asn
GTT
[ENA]
¡û
>CHL1810041771
KY427356
Viridiplantae
Rhachidosorus consimilis (KY427356)
106635
106562
-
Asn
GTT
[ENA]
¡û
>CHL1810041835
KY427359
Viridiplantae
Woodsia polystichoides (KY427359)
127695
127768
+
Asn
GTT
[ENA]
¡û
>CHL1810041839
KY427359
Viridiplantae
Woodsia polystichoides (KY427359)
105136
105063
-
Asn
GTT
[ENA]
¡û
>CHL1810057587
MG432483
Viridiplantae
Adiantum shastense (MG432483)
127539
127612
+
Asn
GTT
[ENA]
¡û
>CHL1810057591
MG432483
Viridiplantae
Adiantum shastense (MG432483)
104989
104916
-
Asn
GTT
[ENA]
¡û
>CHL1810060147
MG913607
Viridiplantae
Cyrtomium fortunei (MG913607)
128338
128411
+
Asn
GTT
[ENA]
¡û
>CHL1810060151
MG913607
Viridiplantae
Cyrtomium fortunei (MG913607)
105686
105613
-
Asn
GTT
[ENA]
¡û
>C181160838
CP028094
Cyanobacteriota
Synechocystis sp. IPPAS B-1465 [CP028094]
2093241
2093312
+
Asn
GTT
-
¡û
>C181169682
CP028914
Cyanobacteriota
Arthrospira sp. TJSD092 [CP028914]
4319898
4319825
-
Asn
GTT
-
¡û
>CHL090101354
AY178864
Viridiplantae
Adiantum capillus-veneris
127608
127681
+
Asn
GTT
[ENA]
¡û
>CHL090101358
AY178864
Viridiplantae
Adiantum capillus-veneris
105243
105170
-
Asn
GTT
[ENA]
¡û
>CHL090102362
DQ821119
Viridiplantae
Angiopteris evecta
133245
133318
+
Asn
GTT
[ENA]
¡û
>CHL090102368
DQ821119
Viridiplantae
Angiopteris evecta
110366
110293
-
Asn
GTT
[ENA]
¡û
>W1810185576
PKGD01000162
Cyanobacteriota
Arthrospira sp. O9.13F [PKGD]
6641
6714
+
Asn
GTT
[ENA]
¡û
>C11122291
AP012205
Cyanobacteriota
Synechocystis sp. PCC 6803 GT-S [AP012205]
2091217
2091288
+
Asn
GTT
[Ensembl]
¡û
>W1511582902
LATL02000140
Cyanobacteriota
Limnoraphis robusta CS-951 [LATL]
1950
2021
+
Asn
GTT
[ENA]
¡û
>C121000601
AP012276
Cyanobacteriota
Synechocystis sp. PCC 6803 substr. GT-I [AP012276]
2090118
2090189
+
Asn
GTT
[Ensembl]
¡û
>C161046050
CP012832
Cyanobacteriota
Synechocystis sp. PCC 6803 [CP012832]
2090291
2090362
+
Asn
GTT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK