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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.342548 (46 seq.)
>W1711283080
LZOF01000053
Spirochaetota
Brachyspira hampsonii [LZOF]
12735
12663
-
Gln
TTG
[ENA]
¡û
>W1711283112
LZOG01000165
Spirochaetota
Brachyspira hampsonii [LZOG]
11503
11432
-
Gln
TTG
[ENA]
¡û
>W1711307488
MAOX01000015
Spirochaetota
Brachyspira hyodysenteriae [MAOX]
52940
52868
-
Gln
TTG
[ENA]
¡û
>W1711307531
MAOY01000025
Spirochaetota
Brachyspira hyodysenteriae [MAOY]
14207
14279
+
Gln
TTG
[ENA]
¡û
>W1711351558
MDCO01000009
Spirochaetota
Brachyspira hampsonii [MDCO]
391509
391437
-
Gln
TTG
[ENA]
¡û
>W1711507042
MKXF01000006
Spirochaetota
Brachyspira hyodysenteriae [MKXF]
83303
83375
+
Gln
TTG
[ENA]
¡û
>W131093648
AOMM01000318
Spirochaetota
Brachyspira hampsonii 30599 [AOMM]
757
829
+
Gln
TTG
[ENA]
¡û
>W131182398
ARQI01000120
Spirochaetota
Brachyspira innocens ATCC 29796 [ARQI]
23554
23626
+
Gln
TTG
[ENA]
¡û
>W131184509
ARSY01000046
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 [ARSY]
36822
36750
-
Gln
TTG
[ENA]
¡û
>WENV180229818
OBCI01061324
[OBCI] human gut metagenome; human gut
149
78
-
Gln
TTG
[ENA]
¢þ
>W141037633
ALNZ01000021
Spirochaetota
Brachyspira hampsonii 30446 [ALNZ]
14930
15001
+
Gln
TTG
[ENA]
¡û
>WENV182221931
OHQT01029047
[OHQT] human gut metagenome; feces
90
163
+
Gln
TTG
[ENA]
¢þ
>W141275729
JADF01000012
Spirochaetota
Brachyspira alvinipulli ATCC 51933 [JADF]
122222
122150
-
Gln
TTG
[ENA]
¡û
>WENV182955320
OKWC01011863
[OKWC] human gut metagenome; human gut
186
257
+
Gln
TTG
[ENA]
¢þ
>WENV183447153
OMCS01001981
[OMCS] human gut metagenome; feces
7187
7116
-
Gln
TTG
[ENA]
¢þ
>WENV183653458
OQVZ01030643
[OQVZ] human gut metagenome; human gut
715
786
+
Gln
TTG
[ENA]
¢þ
>C181038072
CP019600
Spirochaetota
Brachyspira hyodysenteriae BH718 [CP019600]
2567490
2567562
+
Gln
TTG
-
¡û
>C191016986
CP019914
Spirochaetota
Brachyspira hampsonii NSH-16 [CP019914]
2452461
2452533
+
Gln
TTG
-
¡û
>W09108423
ABTG01000002
Spirochaetota
Brachyspira murdochii DSM 12563 [ABTG]
259288
259216
-
Gln
TTG
[ENA]
¡û
>C09102343
CP001357
Spirochaetota
Brachyspira hyodysenteriae WA1 WA1; ATCC 49526 [CP001357]
2808930
2809002
+
Gln
TTG
[Ensembl]
¡û
>W1910569139
JJMJ01000090
Spirochaetota
Brachyspira murdochii D13-03603F2 [JJMJ]
391
463
+
Gln
TTG
[ENA]
¡û
>W1910569209
JJMV01000006
Spirochaetota
Brachyspira hampsonii bv. II KL-180 [JJMV]
2530455
2530384
-
Gln
TTG
[ENA]
¡û
>W1910574873
JQIU01000007
Spirochaetota
Brachyspira sp. G79 [JQIU]
20685
20757
+
Gln
TTG
[ENA]
¡û
>C10101960
CP001959
Spirochaetota
Brachyspira murdochii DSM 12563 [CP001959]
921701
921629
-
Gln
TTG
[Ensembl]
¡û
>C11103105
CP002874
Spirochaetota
Brachyspira intermedia PWS/A [CP002874]
802891
802963
+
Gln
TTG
[Ensembl]
¡û
>W1510641495
CVLB01000001
Spirochaetota
Brachyspira suanatina AN4859/03 [CVLB]
598394
598466
+
Gln
TTG
[ENA]
¡û
>W1511506942
JXNA01000042
Spirochaetota
Brachyspira hyodysenteriae 865 [JXNA]
289231
289303
+
Gln
TTG
[ENA]
¡û
>W1511506980
JXNB01000064
Spirochaetota
Brachyspira hyodysenteriae FMV89.3323 [JXNB]
25329
25257
-
Gln
TTG
[ENA]
¡û
>W1511506997
JXNC01000015
Spirochaetota
Brachyspira hyodysenteriae NX [JXNC]
168711
168783
+
Gln
TTG
[ENA]
¡û
>W1511507029
JXND01000015
Spirochaetota
Brachyspira hyodysenteriae B204 [JXND]
214850
214922
+
Gln
TTG
[ENA]
¡û
>W1511507057
JXNE01000008
Spirochaetota
Brachyspira hyodysenteriae B6933 [JXNE]
12815
12743
-
Gln
TTG
[ENA]
¡û
>W1511507108
JXNF01000061
Spirochaetota
Brachyspira hyodysenteriae B78 [JXNF]
285338
285410
+
Gln
TTG
[ENA]
¡û
>W1511507128
JXNG01000019
Spirochaetota
Brachyspira hyodysenteriae B8044 [JXNG]
171829
171901
+
Gln
TTG
[ENA]
¡û
>W1511507175
JXNH01000076
Spirochaetota
Brachyspira hyodysenteriae G21 [JXNH]
32859
32787
-
Gln
TTG
[ENA]
¡û
>W1511507188
JXNI01000021
Spirochaetota
Brachyspira hyodysenteriae G44 [JXNI]
66723
66795
+
Gln
TTG
[ENA]
¡û
>W1511507220
JXNJ01000010
Spirochaetota
Brachyspira hyodysenteriae FM88.90 [JXNJ]
290648
290720
+
Gln
TTG
[ENA]
¡û
>W1511507263
JXNK01000038
Spirochaetota
Brachyspira hyodysenteriae NSW15 [JXNK]
27228
27156
-
Gln
TTG
[ENA]
¡û
>W1511507298
JXNL01000115
Spirochaetota
Brachyspira hyodysenteriae NSW5 [JXNL]
97551
97623
+
Gln
TTG
[ENA]
¡û
>W1511507328
JXNM01000088
Spirochaetota
Brachyspira hyodysenteriae Q17 [JXNM]
32875
32803
-
Gln
TTG
[ENA]
¡û
>W1511507368
JXNN01000054
Spirochaetota
Brachyspira hyodysenteriae ST190 [JXNN]
288618
288690
+
Gln
TTG
[ENA]
¡û
>W1511507397
JXNO01000061
Spirochaetota
Brachyspira hyodysenteriae ST195 [JXNO]
288349
288421
+
Gln
TTG
[ENA]
¡û
>W1511507415
JXNP01000018
Spirochaetota
Brachyspira hyodysenteriae ST210 [JXNP]
12150
12222
+
Gln
TTG
[ENA]
¡û
>W1511507447
JXNQ01000005
Spirochaetota
Brachyspira hyodysenteriae ST265 [JXNQ]
287890
287962
+
Gln
TTG
[ENA]
¡û
>W1511507478
JXNR01000021
Spirochaetota
Brachyspira hyodysenteriae Vic2 [JXNR]
32940
32868
-
Gln
TTG
[ENA]
¡û
>W1511507533
JXNS01000170
Spirochaetota
Brachyspira hyodysenteriae WA100 [JXNS]
24991
24919
-
Gln
TTG
[ENA]
¡û
>C161092147
CP015910
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 B-78 [CP015910]
916551
916479
-
Gln
TTG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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