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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.342616 (96 seq.)
>W141000219
ACIF01000010
Fusobacteriota
Fusobacterium periodonticum D10 [ACIF]
7715
7641
-
Glu
TTC
[ENA]
¡û
>WENV180551649
OCJG01007034
[OCJG] human oral metagenome; human oral
335
409
+
Glu
TTC
[ENA]
¢þ
>WENV180696547
ODCT01011805
[ODCT] human metagenome; G_DNA_Buccal mucosa
327
253
-
Glu
TTC
[ENA]
¢þ
>WENV180746163
ODHM01011281
[ODHM] human metagenome; G_DNA_Buccal mucosa
326
400
+
Glu
TTC
[ENA]
¢þ
>WENV180759782
ODHY01159064
[ODHY] human metagenome; G_DNA_Buccal mucosa
76
2
-
Glu
TTC
[ENA]
¢þ
>WENV180766013
ODID01016451
[ODID] human metagenome; G_DNA_Attached/Keratinized gingiva
195
121
-
Glu
TTC
[ENA]
¢þ
>WENV180770049
ODIG01338912
[ODIG] human metagenome; G_DNA_Tongue dorsum
76
2
-
Glu
TTC
[ENA]
¢þ
>WENV180773779
ODIJ01002151
[ODIJ] human metagenome; G_DNA_Tongue dorsum
60
134
+
Glu
TTC
[ENA]
¢þ
>WENV180775161
ODIJ01249166
[ODIJ] human metagenome; G_DNA_Tongue dorsum
6
80
+
Glu
TTC
[ENA]
¢þ
>WENV180776984
ODIK01275397
[ODIK] human metagenome; G_DNA_Tongue dorsum
76
2
-
Glu
TTC
[ENA]
¢þ
>WENV180783026
ODIQ01001015
[ODIQ] human metagenome; G_DNA_Tongue dorsum
5639
5713
+
Glu
TTC
[ENA]
¢þ
>WENV180791144
ODIT01123861
[ODIT] human metagenome; G_DNA_Tongue dorsum
6
80
+
Glu
TTC
[ENA]
¢þ
>WENV180802460
ODJE01002189
[ODJE] human metagenome; G_DNA_Tongue dorsum
328
254
-
Glu
TTC
[ENA]
¢þ
>WENV180806162
ODJH01003181
[ODJH] human metagenome; G_DNA_Tongue dorsum
436
510
+
Glu
TTC
[ENA]
¢þ
>WENV180807234
ODJI01000947
[ODJI] human metagenome; G_DNA_Tongue dorsum
7795
7869
+
Glu
TTC
[ENA]
¢þ
>WENV180810265
ODJK01191615
[ODJK] human metagenome; G_DNA_Subgingival plaque
60
134
+
Glu
TTC
[ENA]
¢þ
>WENV180815940
ODJP01002816
[ODJP] human metagenome; G_DNA_Tongue dorsum
328
254
-
Glu
TTC
[ENA]
¢þ
>WENV180830806
ODKB01013901
[ODKB] human metagenome; G_DNA_Tongue dorsum
327
253
-
Glu
TTC
[ENA]
¢þ
>WENV180853599
ODKW01211872
[ODKW] human metagenome; G_DNA_Tongue dorsum
76
2
-
Glu
TTC
[ENA]
¢þ
>WENV180855950
ODKZ01000584
[ODKZ] human metagenome; G_DNA_Tongue dorsum
3202
3276
+
Glu
TTC
[ENA]
¢þ
>WENV180859025
ODLC01135414
[ODLC] human metagenome; G_DNA_Tongue dorsum
116
42
-
Glu
TTC
[ENA]
¢þ
>WENV180863586
ODLH01000637
[ODLH] human metagenome; G_DNA_Tongue dorsum
8853
8779
-
Glu
TTC
[ENA]
¢þ
>WENV180866507
ODLJ01027991
[ODLJ] human metagenome; G_DNA_Tongue dorsum
327
253
-
Glu
TTC
[ENA]
¢þ
>WENV180877733
ODLV01001721
[ODLV] human metagenome; G_DNA_Tongue dorsum
7710
7784
+
Glu
TTC
[ENA]
¢þ
>WENV180879900
ODLZ01003674
[ODLZ] human metagenome; G_DNA_Tongue dorsum
652
726
+
Glu
TTC
[ENA]
¢þ
>WENV180883852
ODMC01018714
[ODMC] human metagenome; G_DNA_Tongue dorsum
1529
1603
+
Glu
TTC
[ENA]
¢þ
>WENV180902485
ODOK01064760
[ODOK] human metagenome; G_DNA_Tongue dorsum
239
313
+
Glu
TTC
[ENA]
¢þ
>WENV180920074
ODTH01001166
[ODTH] human metagenome; G_DNA_Tongue dorsum
5777
5851
+
Glu
TTC
[ENA]
¢þ
>WENV180932794
ODTP01216246
[ODTP] human metagenome; G_DNA_Tongue dorsum
76
2
-
Glu
TTC
[ENA]
¢þ
>WENV180936896
ODTV01000953
[ODTV] human metagenome; G_DNA_Buccal mucosa
1161
1235
+
Glu
TTC
[ENA]
¢þ
>WENV180937252
ODTV01039230
[ODTV] human metagenome; G_DNA_Buccal mucosa
6
80
+
Glu
TTC
[ENA]
¢þ
>WENV180945914
ODUD01000665
[ODUD] human metagenome; G_DNA_Tongue dorsum
9453
9527
+
Glu
TTC
[ENA]
¢þ
>WENV180950433
ODUG01226820
[ODUG] human metagenome; G_DNA_Tongue dorsum
76
2
-
Glu
TTC
[ENA]
¢þ
>WENV180968505
ODUT01031511
[ODUT] human metagenome; G_DNA_Tongue dorsum
327
253
-
Glu
TTC
[ENA]
¢þ
>WENV180977576
ODUZ01001984
[ODUZ] human metagenome; G_DNA_Tongue dorsum
7807
7881
+
Glu
TTC
[ENA]
¢þ
>WENV180986409
ODVJ01174853
[ODVJ] human metagenome; G_DNA_Tongue dorsum
76
2
-
Glu
TTC
[ENA]
¢þ
>WENV180989255
ODVL01079613
[ODVL] human metagenome; G_DNA_Tongue dorsum
61
135
+
Glu
TTC
[ENA]
¢þ
>WENV181011258
ODWI01015442
[ODWI] human metagenome; G_DNA_Tongue dorsum
631
705
+
Glu
TTC
[ENA]
¢þ
>WENV181034318
ODXN01184862
[ODXN] human metagenome; G_DNA_Tongue dorsum
76
2
-
Glu
TTC
[ENA]
¢þ
>WENV181038724
ODXQ01003892
[ODXQ] human metagenome; G_DNA_Tongue dorsum
8002
7928
-
Glu
TTC
[ENA]
¢þ
>WENV181044041
ODXV01002366
[ODXV] human metagenome; G_DNA_Tongue dorsum
5623
5549
-
Glu
TTC
[ENA]
¢þ
>WENV181044648
ODXV01021470
[ODXV] human metagenome; G_DNA_Tongue dorsum
956
1030
+
Glu
TTC
[ENA]
¢þ
>WENV181046370
ODXW01025816
[ODXW] human metagenome; G_DNA_Tongue dorsum
32
106
+
Glu
TTC
[ENA]
¢þ
>WENV181052655
ODYG01008653
[ODYG] human metagenome; G_DNA_Tongue dorsum
537
611
+
Glu
TTC
[ENA]
¢þ
>WENV181057892
ODYL01001667
[ODYL] human metagenome; G_DNA_Tongue dorsum
4984
5058
+
Glu
TTC
[ENA]
¢þ
>WENV181059466
ODYM01001261
[ODYM] human metagenome; G_DNA_Tongue dorsum
7808
7882
+
Glu
TTC
[ENA]
¢þ
>WENV181074312
OEAO01005650
[OEAO] human metagenome; G_DNA_Tongue dorsum
4906
4980
+
Glu
TTC
[ENA]
¢þ
>WENV181085141
OEAX01001887
[OEAX] human metagenome; G_DNA_Tongue dorsum
7861
7935
+
Glu
TTC
[ENA]
¢þ
>WENV181098294
OECA01187788
[OECA] human metagenome; G_DNA_Tongue dorsum
76
2
-
Glu
TTC
[ENA]
¢þ
>WENV181108832
OEEJ01000486
[OEEJ] human metagenome; G_DNA_Tongue dorsum
9453
9527
+
Glu
TTC
[ENA]
¢þ
>WENV181129562
OEFX01043223
[OEFX] human metagenome; G_DNA_Tongue dorsum
372
298
-
Glu
TTC
[ENA]
¢þ
>WENV181176502
OEJR01008355
[OEJR] human metagenome; G_DNA_Saliva
936
1010
+
Glu
TTC
[ENA]
¢þ
>WENV181501983
OGGI01003180
[OGGI] metagenome; Human gut stool
314
240
-
Glu
TTC
[ENA]
¢þ
>WENV181581621
OGKA01027346
[OGKA] metagenome; Human gut stool
1112
1038
-
Glu
TTC
[ENA]
¢þ
>WENV182858312
OKOC01006701
[OKOC] human gut metagenome; human gut
542
616
+
Glu
TTC
[ENA]
¢þ
>WENV183025154
OLFT01004900
[OLFT] human gut metagenome; faeces
7789
7863
+
Glu
TTC
[ENA]
¢þ
>C183001072
CP022124
Fusobacteriota
Fusobacterium animalis ChDC F332 [CP022124]
509047
509121
+
Glu
TTC
-
¡û
>C181104029
CP024699
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 1261 [CP024699]
1414214
1414140
-
Glu
TTC
-
¡û
>C181104093
CP024700
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 1263 [CP024700]
65029
64955
-
Glu
TTC
-
¡û
>C181104120
CP024701
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 1277 [CP024701]
2058403
2058329
-
Glu
TTC
-
¡û
>C181104166
CP024702
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 1282 [CP024702]
2012008
2012082
+
Glu
TTC
-
¡û
>C181104276
CP024704
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 2555 [CP024704]
78292
78218
-
Glu
TTC
-
¡û
>C181104290
CP024705
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 2653 [CP024705]
1375122
1375196
+
Glu
TTC
-
¡û
>C181104853
CP024731
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 1262 [CP024731]
2287327
2287401
+
Glu
TTC
-
¡û
>C181161231
CP028108
Fusobacteriota
Fusobacterium periodonticum 2_1_31 [CP028108]
1823392
1823318
-
Glu
TTC
-
¡û
>W09118572
ACDC01000157
Fusobacteriota
Fusobacterium periodonticum 2_1_31 [ACDC]
5562
5636
+
Glu
TTC
[ENA]
¡û
>W09126681
ACJY01000081
Fusobacteriota
Fusobacterium periodonticum ATCC 33693 [ACJY]
737
663
-
Glu
TTC
[ENA]
¡û
>W09300414
ACDF01000048
Fusobacteriota
Fusobacterium animalis 7_1 [ACDF]
20088
20014
-
Glu
TTC
[ENA]
¡û
>W09300435
ACDS01000209
Fusobacteriota
Fusobacterium animalis D11 [ACDS]
1174
1100
-
Glu
TTC
[ENA]
¡û
>W143001591
ATKD01000019
Fusobacteriota
Fusobacterium animalis subsp. animalis ChDC F324 [ATKD]
7427
7501
+
Glu
TTC
[ENA]
¡û
>W143003267
AXNW01000006
Fusobacteriota
Fusobacterium nucleatum CTI-5 [AXNW]
35385
35459
+
Glu
TTC
[ENA]
¡û
>W143003269
AXNX01000005
Fusobacteriota
Fusobacterium nucleatum CTI-3 [AXNX]
30837
30911
+
Glu
TTC
[ENA]
¡û
>W143003270
AXNZ01000005
Fusobacteriota
Fusobacterium nucleatum CTI-1 [AXNZ]
166375
166449
+
Glu
TTC
[ENA]
¡û
>W143006475
JANB01000019
Fusobacteriota
Fusobacterium sp. CM1 [JANB]
14910
14836
-
Glu
TTC
[ENA]
¡û
>W1930021826
NJGJ01000001
Fusobacteriota
Fusobacterium animalis [NJGJ]
26827
26753
-
Glu
TTC
[ENA]
¡û
>W1930029358
NPNC01000004
Fusobacteriota
Fusobacterium animalis subsp. animalis P2_LM [NPNC]
29900
29826
-
Glu
TTC
[ENA]
¡û
>W1930029359
NPND01000006
Fusobacteriota
Fusobacterium animalis subsp. animalis P2_CP [NPND]
29900
29826
-
Glu
TTC
[ENA]
¡û
>W1930035917
PNHC01000011
Fusobacteriota
Fusobacterium nucleatum UMB0249 [PNHC]
58211
58285
+
Glu
TTC
[ENA]
¡û
>C153000285
CP007062
Fusobacteriota
Fusobacterium animalis 7_1 [CP007062]
2386819
2386893
+
Glu
TTC
[Ensembl]
¡û
>C153001360
CP012713
Fusobacteriota
Fusobacterium animalis KCOM 1279 [CP012713]
218612
218538
-
Glu
TTC
-
¡û
>C153001361
CP012715
Fusobacteriota
Fusobacterium animalis KCOM 1325 [CP012715]
20085
20011
-
Glu
TTC
-
¡û
>W10113573
ADGG01000004
Fusobacteriota
Fusobacterium periodonticum 1_1_41FAA [ADGG]
41093
41019
-
Glu
TTC
[ENA]
¡û
>W10113587
ADGG01000051
Fusobacteriota
Fusobacterium periodonticum 1_1_41FAA [ADGG]
52765
52839
+
Glu
TTC
[ENA]
¡û
>W10300097
ACQE01000149
Fusobacteriota
Fusobacterium animalis 3_1_33 [ACQE]
1065
991
-
Glu
TTC
[ENA]
¡û
>W11300103
ACQE01000149
Fusobacteriota
Fusobacterium animalis 3_1_33 [ACQE]
1065
991
-
Glu
TTC
[ENA]
¡û
>W11300196
ACUO01000048
Fusobacteriota
Fusobacterium animalis 11_3_2 [ACUO]
66198
66272
+
Glu
TTC
[ENA]
¡û
>W11300436
ADEE01000007
Fusobacteriota
Fusobacterium animalis 21_1A [ADEE]
1287
1213
-
Glu
TTC
[ENA]
¡û
>W11301679
AFQD01000487
Fusobacteriota
Fusobacterium animalis subsp. animalis ATCC 51191 [AFQD]
1051
1125
+
Glu
TTC
[ENA]
¡û
>W11115175
ADEE01000012
Fusobacteriota
Fusobacterium animalis 21_1A [ADEE]
8127
8201
+
Glu
TTC
[ENA]
¡û
>W11116862
ADGG01000004
Fusobacteriota
Fusobacterium periodonticum 1_1_41FAA [ADGG]
41093
41019
-
Glu
TTC
[ENA]
¡û
>W11116876
ADGG01000051
Fusobacteriota
Fusobacterium periodonticum 1_1_41FAA [ADGG]
52765
52839
+
Glu
TTC
[ENA]
¡û
>W123000294
AGEH01000019
Fusobacteriota
Fusobacterium animalis subsp. animalis F0419 [AGEH]
41581
41655
+
Glu
TTC
[ENA]
¡û
>W123001760
AKBT01000001
Fusobacteriota
Fusobacterium animalis 7_1 [AKBT]
2200920
2200994
+
Glu
TTC
[ENA]
¡û
>W123001790
AKCE01000001
Fusobacteriota
Fusobacterium animalis subsp. animalis F0419 [AKCE]
775585
775511
-
Glu
TTC
[ENA]
¡û
>C133000164
CP003723
Fusobacteriota
Fusobacterium animalis 4_8 [CP003723]
122481
122407
-
Glu
TTC
[Ensembl]
¡û
>W1730021079
LTWB01000097
Fusobacteriota
Fusobacterium sp. HMSC065F01 [LTWB]
3653
3727
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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