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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.34264 (44 seq.)
>W1711378233
MDZM01000011
Gammaproteobacteria
Yersinia ruckeri [MDZM]
435149
435238
+
Ser
GGA
[ENA]
¡û
>W1711378447
MDZP01000011
Gammaproteobacteria
Yersinia ruckeri [MDZP]
324113
324202
+
Ser
GGA
[ENA]
¡û
>W1711378512
MDZQ01000011
Gammaproteobacteria
Yersinia ruckeri [MDZQ]
324207
324296
+
Ser
GGA
[ENA]
¡û
>W1711378750
MDZT01000025
Gammaproteobacteria
Yersinia ruckeri [MDZT]
435113
435202
+
Ser
GGA
[ENA]
¡û
>W1711378963
MDZW01000013
Gammaproteobacteria
Yersinia ruckeri [MDZW]
435104
435193
+
Ser
GGA
[ENA]
¡û
>W1711379547
MEAD01000076
Gammaproteobacteria
Yersinia ruckeri [MEAD]
98690
98779
+
Ser
GGA
[ENA]
¡û
>W1711379698
MEAF01000075
Gammaproteobacteria
Yersinia ruckeri [MEAF]
98519
98608
+
Ser
GGA
[ENA]
¡û
>W1711379764
MEAG01000066
Gammaproteobacteria
Yersinia ruckeri [MEAG]
98350
98439
+
Ser
GGA
[ENA]
¡û
>W1711379919
MEAI01000067
Gammaproteobacteria
Yersinia ruckeri [MEAI]
98350
98439
+
Ser
GGA
[ENA]
¡û
>W1711380000
MEAJ01000077
Gammaproteobacteria
Yersinia ruckeri [MEAJ]
98350
98439
+
Ser
GGA
[ENA]
¡û
>W1711380406
MEAO01000073
Gammaproteobacteria
Yersinia ruckeri [MEAO]
98350
98439
+
Ser
GGA
[ENA]
¡û
>W1711380481
MEAP01000066
Gammaproteobacteria
Yersinia ruckeri [MEAP]
98519
98608
+
Ser
GGA
[ENA]
¡û
>W1711382349
MEBV01000011
Gammaproteobacteria
Yersinia ruckeri [MEBV]
49606
49695
+
Ser
GGA
[ENA]
¡û
>W1711382475
MEBW01000065
Gammaproteobacteria
Yersinia ruckeri [MEBW]
98471
98560
+
Ser
GGA
[ENA]
¡û
>W1711382703
MEBZ01000068
Gammaproteobacteria
Yersinia ruckeri [MEBZ]
98521
98610
+
Ser
GGA
[ENA]
¡û
>W1711383408
MECI01000075
Gammaproteobacteria
Yersinia ruckeri [MECI]
98352
98441
+
Ser
GGA
[ENA]
¡û
>W1711658154
MQML01000192
Gammaproteobacteria
Serratia plymuthica [MQML]
11543
11632
+
Ser
GGA
[ENA]
¡û
>W1711659047
MQRG01000001
Gammaproteobacteria
Serratia liquefaciens [MQRG]
830602
830513
-
Ser
GGA
[ENA]
¡û
>W1711797567
MWTM01000015
Gammaproteobacteria
Yersinia entomophaga [MWTM]
81645
81734
+
Ser
GGA
[ENA]
¡û
>W131047087
AMSV01000033
Gammaproteobacteria
Serratia plymuthica A30 [AMSV]
90124
90035
-
Ser
GGA
[ENA]
¡û
>W141092403
AUZV01000046
Gammaproteobacteria
Serratia fonticola UTAD54 [AUZV]
32394
32305
-
Ser
GGA
[ENA]
¡û
>C08010498
CP000826
Gammaproteobacteria
Serratia proteamaculans [CP000826]
2115801
2115715
-
Ser
GGA
[Ensembl]
¡û
>W141236258
BAZB01000006
Gammaproteobacteria
Serratia liquefaciens FK01 [BAZB]
223277
223188
-
Ser
GGA
[ENA]
¡û
>W141282930
JAJC01000006
Gammaproteobacteria
Chania multitudinisentens RB-25 [JAJC]
304947
305036
+
Ser
GGA
[ENA]
¡û
>WENV183636192
OOJR01001198
[OOJR] human gut metagenome; Lung tissue
1024
1113
+
Ser
GGA
[ENA]
¢þ
>C181077036
CP023184
Gammaproteobacteria
Yersinia ruckeri NHV_3758 [CP023184]
1749394
1749305
-
Ser
GGA
-
¡û
>C181123240
CP025800
Gammaproteobacteria
Yersinia ruckeri SC09 [CP025800]
3418636
3418725
+
Ser
GGA
-
¡û
>C191160201
CP038467
Gammaproteobacteria
Serratia quinivorans PKL:12 [CP038467]
1409951
1410040
+
Ser
GGA
-
¡û
>W1911653344
QCZL01000016
Gammaproteobacteria
Yersinia sp. IP36721 [QCZL]
17714
17625
-
Ser
GGA
[ENA]
¡û
>W1911809364
QYYG01000001
Gammaproteobacteria
Serratia inhibens S40 [QYYG]
1000603
1000692
+
Ser
GGA
[ENA]
¡û
>C151016601
CP007044
Gammaproteobacteria
Chania multitudinisentens RB-25 [CP007044]
3388562
3388473
-
Ser
GGA
[Ensembl]
¡û
>C151053527
CP009539
Gammaproteobacteria
Yersinia ruckeri YRB [CP009539]
170837
170748
-
Ser
GGA
[Ensembl]
¡û
>C151076447
CP011078
Gammaproteobacteria
Yersinia ruckeri Big Creek 74 [CP011078]
200108
200019
-
Ser
GGA
[Ensembl]
¡û
>C151078658
CP011254
Gammaproteobacteria
Serratia fonticola DSM 4576 [CP011254]
5140029
5140118
+
Ser
GGA
[Ensembl]
¡û
>C151079284
CP011303
Gammaproteobacteria
Serratia liquefaciens HUMV-21 [CP011303]
3047329
3047418
+
Ser
GGA
[Ensembl]
¡û
>W1510061769
CCYO01000033
Gammaproteobacteria
Yersinia ruckeri CSF007-82 [CCYO]
26595
26506
-
Ser
GGA
[ENA]
¡û
>C11120304
CP002774
Gammaproteobacteria
Serratia sp. AS12 [CP002774]
2033741
2033652
-
Ser
GGA
[Ensembl]
¡û
>W1511464867
JVQG01000025
Gammaproteobacteria
Serratia liquefaciens 20_SPLY [JVQG]
692738
692649
-
Ser
GGA
[ENA]
¡û
>C161023109
CP010029
Gammaproteobacteria
Yersinia entomophaga MH96 [CP010029]
955924
955835
-
Ser
GGA
-
¡û
>C161064580
CP014017
Gammaproteobacteria
Serratia liquefaciens FDAARGOS_125 [CP014017]
573932
574021
+
Ser
GGA
[Ensembl]
¡û
>W1610186137
FBSD01000008
Gammaproteobacteria
Serratia grimesii Serratia [FBSD]
1168681
1168592
-
Ser
GGA
[ENA]
¡û
>C131017553
CP006566
Gammaproteobacteria
Serratia plymuthica S13 [CP006566]
2031803
2031714
-
Ser
GGA
[Ensembl]
¡û
>C131017354
CP006252
Gammaproteobacteria
Serratia liquefaciens ATCC 27592 [CP006252]
1970747
1970658
-
Ser
GGA
[Ensembl]
¡û
>W1710187753
FBSD01000008
Gammaproteobacteria
Serratia grimesii Serratia [FBSD]
1168681
1168592
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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