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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.342642 (91 seq.)
>W1711111005
LTWB01000021
Fusobacteriota
Fusobacterium sp. HMSC065F01 [LTWB]
15274
15348
+
Glu
TTC
[ENA]
¡û
>W1711525246
MLQO01000002
Fusobacteriota
Fusobacterium nucleatum [MLQO]
86052
85978
-
Glu
TTC
[ENA]
¡û
>W131100349
AOUL01000061
Fusobacteriota
Fusobacterium nucleatum CC53 [AOUL]
258
184
-
Glu
TTC
[ENA]
¡û
>C009455
AE009951
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [AE009951]
755398
755324
-
Glu
TTC
[Ensembl]
¡û
>C009472
AE009951
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [AE009951]
260369
260295
-
Glu
TTC
[Ensembl]
¡û
>C009488
AE009951
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [AE009951]
85657
85583
-
Glu
TTC
[Ensembl]
¡û
>w002480
AABF01000007
Fusobacteriota
Fusobacterium vincentii subsp. vincentii ATCC 49256 [AABF]
23976
23900
-
Glu
TTC
[ENA]
¡û
>WENV180548408
OCIW01015666
[OCIW] human oral metagenome; human oral
112
38
-
Glu
TTC
[ENA]
¢þ
>WENV180550244
OCIZ01060466
[OCIZ] human oral metagenome; human oral
89
15
-
Glu
TTC
[ENA]
¢þ
>WENV180718206
ODGF01001090
[ODGF] human metagenome; G_DNA_Throat
317
243
-
Glu
TTC
[ENA]
¢þ
>WENV180721100
ODGK01006611
[ODGK] human metagenome; G_DNA_Palatine Tonsils
633
707
+
Glu
TTC
[ENA]
¢þ
>WENV180721670
ODGL01005245
[ODGL] human metagenome; G_DNA_Subgingival plaque
860
786
-
Glu
TTC
[ENA]
¢þ
>WENV180721676
ODGL01005245
[ODGL] human metagenome; G_DNA_Subgingival plaque
302
228
-
Glu
TTC
[ENA]
¢þ
>WENV180765228
ODIB01046754
[ODIB] human metagenome; G_DNA_Supragingival plaque
329
403
+
Glu
TTC
[ENA]
¢þ
>WENV180782787
ODIQ01000187
[ODIQ] human metagenome; G_DNA_Tongue dorsum
7678
7752
+
Glu
TTC
[ENA]
¢þ
>WENV180783047
ODIQ01001154
[ODIQ] human metagenome; G_DNA_Tongue dorsum
2317
2391
+
Glu
TTC
[ENA]
¢þ
>W141078880
ATKB01000006
Fusobacteriota
Fusobacterium vincentii subsp. vincentii ChDC F8 [ATKB]
808
882
+
Glu
TTC
[ENA]
¡û
>W141078945
ATKD01000011
Fusobacteriota
Fusobacterium animalis subsp. animalis ChDC F324 [ATKD]
78
4
-
Glu
TTC
[ENA]
¡û
>W141078970
ATKE01000017
Fusobacteriota
Fusobacterium hwasookii ChDC F145 [ATKE]
393
467
+
Glu
TTC
[ENA]
¡û
>W141078984
ATKE01000034
Fusobacteriota
Fusobacterium hwasookii ChDC F145 [ATKE]
51564
51638
+
Glu
TTC
[ENA]
¡û
>W141078993
ATKE01000064
Fusobacteriota
Fusobacterium hwasookii ChDC F145 [ATKE]
3397
3323
-
Glu
TTC
[ENA]
¡û
>WENV180820204
ODJR01002855
[ODJR] human metagenome; G_DNA_Tongue dorsum
6999
7073
+
Glu
TTC
[ENA]
¢þ
>WENV180820510
ODJR01010019
[ODJR] human metagenome; G_DNA_Tongue dorsum
1552
1626
+
Glu
TTC
[ENA]
¢þ
>WENV180830466
ODKB01003972
[ODKB] human metagenome; G_DNA_Tongue dorsum
1411
1485
+
Glu
TTC
[ENA]
¢þ
>WENV180831476
ODKB01227286
[ODKB] human metagenome; G_DNA_Tongue dorsum
6
80
+
Glu
TTC
[ENA]
¢þ
>WENV180842514
ODKM01044717
[ODKM] human metagenome; G_DNA_Buccal mucosa
224
298
+
Glu
TTC
[ENA]
¢þ
>WENV180875025
ODLQ01021405
[ODLQ] human metagenome; G_DNA_Tongue dorsum
611
685
+
Glu
TTC
[ENA]
¢þ
>WENV180881656
ODMA01023773
[ODMA] human metagenome; G_DNA_Supragingival plaque
273
199
-
Glu
TTC
[ENA]
¢þ
>WENV180897619
ODNI01044847
[ODNI] human metagenome; G_DNA_Tongue dorsum
437
511
+
Glu
TTC
[ENA]
¢þ
>WENV180987512
ODVK01033367
[ODVK] human metagenome; G_DNA_Supragingival plaque
550
624
+
Glu
TTC
[ENA]
¢þ
>WENV180987591
ODVK01047764
[ODVK] human metagenome; G_DNA_Supragingival plaque
133
59
-
Glu
TTC
[ENA]
¢þ
>WENV180987737
ODVK01103480
[ODVK] human metagenome; G_DNA_Supragingival plaque
89
163
+
Glu
TTC
[ENA]
¢þ
>WENV181005964
ODWA01000265
[ODWA] human metagenome; G_DNA_Buccal mucosa
16594
16520
-
Glu
TTC
[ENA]
¢þ
>WENV181006018
ODWA01000481
[ODWA] human metagenome; G_DNA_Buccal mucosa
6438
6364
-
Glu
TTC
[ENA]
¢þ
>WENV181006059
ODWA01000850
[ODWA] human metagenome; G_DNA_Buccal mucosa
132
58
-
Glu
TTC
[ENA]
¢þ
>WENV181027497
ODXD01004458
[ODXD] human metagenome; G_DNA_Buccal mucosa
1865
1791
-
Glu
TTC
[ENA]
¢þ
>WENV181074267
OEAO01005249
[OEAO] human metagenome; G_DNA_Tongue dorsum
4125
4051
-
Glu
TTC
[ENA]
¢þ
>WENV181074362
OEAO01006667
[OEAO] human metagenome; G_DNA_Tongue dorsum
758
684
-
Glu
TTC
[ENA]
¢þ
>WENV181078063
OEAQ01001896
[OEAQ] human metagenome; G_DNA_Buccal mucosa
350
276
-
Glu
TTC
[ENA]
¢þ
>WENV181085106
OEAX01001682
[OEAX] human metagenome; G_DNA_Tongue dorsum
4107
4181
+
Glu
TTC
[ENA]
¢þ
>WENV181112614
OEEL01001660
[OEEL] human metagenome; G_DNA_Tongue dorsum
9199
9273
+
Glu
TTC
[ENA]
¢þ
>WENV181113029
OEEL01009284
[OEEL] human metagenome; G_DNA_Tongue dorsum
1882
1808
-
Glu
TTC
[ENA]
¢þ
>WENV181113147
OEEL01012939
[OEEL] human metagenome; G_DNA_Tongue dorsum
649
575
-
Glu
TTC
[ENA]
¢þ
>WENV181158712
OEIH01006914
[OEIH] human metagenome; G_DNA_Supragingival plaque
1283
1357
+
Glu
TTC
[ENA]
¢þ
>WENV181158764
OEIH01008935
[OEIH] human metagenome; G_DNA_Supragingival plaque
132
58
-
Glu
TTC
[ENA]
¢þ
>WENV181158983
OEIH01025704
[OEIH] human metagenome; G_DNA_Supragingival plaque
310
236
-
Glu
TTC
[ENA]
¢þ
>WENV181427235
OGCQ01048863
[OGCQ] human gut metagenome; human gut
492
566
+
Glu
TTC
[ENA]
¢þ
>W141157847
AXNU01000004
Fusobacteriota
Fusobacterium nucleatum CTI-7 [AXNU]
9907
9833
-
Glu
TTC
[ENA]
¡û
>W141157932
AXNW01000005
Fusobacteriota
Fusobacterium nucleatum CTI-5 [AXNW]
9707
9633
-
Glu
TTC
[ENA]
¡û
>W141157975
AXNX01000003
Fusobacteriota
Fusobacterium nucleatum CTI-3 [AXNX]
9579
9505
-
Glu
TTC
[ENA]
¡û
>W141158073
AXNZ01000005
Fusobacteriota
Fusobacterium nucleatum CTI-1 [AXNZ]
9502
9428
-
Glu
TTC
[ENA]
¡û
>W141221288
AZYU01000062
Fusobacteriota
Fusobacterium sp. CM21 [AZYU]
4
78
+
Glu
TTC
[ENA]
¡û
>W141221303
AZYU01000259
Fusobacteriota
Fusobacterium sp. CM21 [AZYU]
262
188
-
Glu
TTC
[ENA]
¡û
>WENV182600103
OJJF01011593
[OJJF] metagenome; faeces
594
668
+
Glu
TTC
[ENA]
¢þ
>W141273961
JAAC01000138
Fusobacteriota
Fusobacterium necrophorum BL [JAAC]
321
247
-
Glu
TTC
[ENA]
¡û
>WENV182864382
OKQC01001649
[OKQC] human gut metagenome; human gut
36
110
+
Glu
TTC
[ENA]
¢þ
>W141284895
JANB01000059
Fusobacteriota
Fusobacterium sp. CM1 [JANB]
444
370
-
Glu
TTC
[ENA]
¡û
>WENV182881954
OKSA01068903
[OKSA] human gut metagenome; faeces
454
380
-
Glu
TTC
[ENA]
¢þ
>WENV183012728
OLED01007623
[OLED] human gut metagenome; human gut
615
541
-
Glu
TTC
[ENA]
¢þ
>C181058923
CP022124
Fusobacteriota
Fusobacterium animalis ChDC F332 [CP022124]
409120
409046
-
Glu
TTC
-
¡û
>C181105017
CP024749
Fusobacteriota
Fusobacterium vincentii KCOM 2931 [CP024749]
1675541
1675615
+
Glu
TTC
-
¡û
>W09118674
ACDE01000032
Fusobacteriota
Fusobacterium vincentii 4_1_13 [ACDE]
9730
9656
-
Glu
TTC
[ENA]
¡û
>W09118709
ACDF01000050
Fusobacteriota
Fusobacterium animalis 7_1 [ACDF]
90450
90524
+
Glu
TTC
[ENA]
¡û
>W09119360
ACDS01000224
Fusobacteriota
Fusobacterium animalis D11 [ACDS]
9544
9470
-
Glu
TTC
[ENA]
¡û
>C141001785
CP003700
Fusobacteriota
Fusobacterium vincentii 3_1_36A2 [CP003700]
246422
246496
+
Glu
TTC
[Ensembl]
¡û
>W1910928969
NIRM01000003
Fusobacteriota
Fusobacterium polymorphum [NIRM]
74046
74120
+
Glu
TTC
[ENA]
¡û
>W1910942336
NJGJ01000001
Fusobacteriota
Fusobacterium animalis [NJGJ]
228328
228402
+
Glu
TTC
[ENA]
¡û
>W1911160062
NPNC01000022
Fusobacteriota
Fusobacterium animalis subsp. animalis P2_LM [NPNC]
15798
15724
-
Glu
TTC
[ENA]
¡û
>W1911160118
NPND01000021
Fusobacteriota
Fusobacterium animalis subsp. animalis P2_CP [NPND]
15798
15724
-
Glu
TTC
[ENA]
¡û
>W1911596357
PNHC01000004
Fusobacteriota
Fusobacterium nucleatum UMB0249 [PNHC]
148525
148451
-
Glu
TTC
[ENA]
¡û
>W1810076332
PEIJ01000001
Fusobacteriota
Fusobacterium vincentii subsp. vincentii KCOM 2880 [PEIJ]
719015
718941
-
Glu
TTC
[ENA]
¡û
>C151016814
CP007062
Fusobacteriota
Fusobacterium animalis 7_1 [CP007062]
2196969
2196895
-
Glu
TTC
[Ensembl]
¡û
>C151016861
CP007065
Fusobacteriota
Fusobacterium vincentii 3_1_27 [CP007064, CP007065]
182162
182088
-
Glu
TTC
[Ensembl]
¡û
>C151097727
CP012713
Fusobacteriota
Fusobacterium animalis KCOM 1279 [CP012713]
355778
355852
+
Glu
TTC
-
¡û
>C151097774
CP012714
Fusobacteriota
Fusobacterium vincentii ChDC F8 KCOM 1231 [CP012714]
179965
180039
+
Glu
TTC
-
¡û
>C151097803
CP012715
Fusobacteriota
Fusobacterium animalis KCOM 1325 [CP012715]
119435
119509
+
Glu
TTC
-
¡û
>W10102867
ACPU01000031
Fusobacteriota
Fusobacterium vincentii 3_1_36A2 [ACPU]
3097
3023
-
Glu
TTC
[ENA]
¡û
>W10103305
ACQE01000155
Fusobacteriota
Fusobacterium animalis 3_1_33 [ACQE]
14646
14720
+
Glu
TTC
[ENA]
¡û
>W10113512
ADGF01000002
Fusobacteriota
Fusobacterium vincentii 3_1_27 [ADGF]
18230
18156
-
Glu
TTC
[ENA]
¡û
>W11103023
ACPU01000031
Fusobacteriota
Fusobacterium vincentii 3_1_36A2 [ACPU]
3097
3023
-
Glu
TTC
[ENA]
¡û
>W11103461
ACQE01000155
Fusobacteriota
Fusobacterium animalis 3_1_33 [ACQE]
14646
14720
+
Glu
TTC
[ENA]
¡û
>W11106145
ACUO01000020
Fusobacteriota
Fusobacterium animalis 11_3_2 [ACUO]
41774
41700
-
Glu
TTC
[ENA]
¡û
>W11115190
ADEE01000012
Fusobacteriota
Fusobacterium animalis 21_1A [ADEE]
69800
69874
+
Glu
TTC
[ENA]
¡û
>W11116801
ADGF01000002
Fusobacteriota
Fusobacterium vincentii 3_1_27 [ADGF]
18230
18156
-
Glu
TTC
[ENA]
¡û
>W11171109
AFQD01000095
Fusobacteriota
Fusobacterium animalis subsp. animalis ATCC 51191 [AFQD]
11683
11609
-
Glu
TTC
[ENA]
¡û
>W11171121
AFQD01000170
Fusobacteriota
Fusobacterium animalis subsp. animalis ATCC 51191 [AFQD]
4501
4427
-
Glu
TTC
[ENA]
¡û
>W121009379
AGEH01000025
Fusobacteriota
Fusobacterium animalis subsp. animalis F0419 [AGEH]
37828
37902
+
Glu
TTC
[ENA]
¡û
>W121076749
AKBT01000001
Fusobacteriota
Fusobacterium animalis 7_1 [AKBT]
2011066
2010992
-
Glu
TTC
[ENA]
¡û
>W121077405
AKCE01000001
Fusobacteriota
Fusobacterium animalis subsp. animalis F0419 [AKCE]
390915
390841
-
Glu
TTC
[ENA]
¡û
>W121102426
AKXI01000015
Fusobacteriota
Fusobacterium vincentii subsp. fusiforme ATCC 51190 [AKXI]
22603
22529
-
Glu
TTC
[ENA]
¡û
>C131005520
CP003723
Fusobacteriota
Fusobacterium animalis 4_8 [CP003723]
2013681
2013607
-
Glu
TTC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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