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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.342689 (25 seq.)
>W1711352293
MDDB01000007
Bacillota
Moorella thermoacetica [MDDB]
76923
76997
+
Val
CAC
[ENA]
¡û
>W1711352344
MDDC01000032
Bacillota
Moorella thermoacetica [MDDC]
4500
4574
+
Val
CAC
[ENA]
¡û
>W1711352396
MDDD01000016
Bacillota
Moorella thermoacetica [MDDD]
5681
5755
+
Val
CAC
[ENA]
¡û
>W1711352448
MDDE01000011
Bacillota
Moorella thermoacetica [MDDE]
14008
13934
-
Val
CAC
[ENA]
¡û
>W1711428549
MIHH01000008
Bacillota
Moorella thermoacetica [MIHH]
8579
8505
-
Val
CAC
[ENA]
¡û
>W1711428600
MIIF01000010
Bacillota
Moorella thermoacetica [MIIF]
104017
104091
+
Val
CAC
[ENA]
¡û
>C171055173
CP017019
Bacillota
Moorella thermoacetica DSM 103132 [CP017019]
291276
291350
+
Val
CAC
-
¡û
>C171058943
CP017237
Bacillota
Moorella thermoacetica DSM 103284 [CP017237]
270396
270470
+
Val
CAC
-
¡û
>C014162
CP000232
Bacillota
Moorella thermoacetica [CP000232]
377364
377438
+
Val
CAC
[Ensembl]
¡û
>W141229803
BARR01000028
Bacillota
Moorella thermoacetica Y72 [BARR]
136419
136493
+
Val
CAC
[ENA]
¡û
>WENV170677380
LDZT01005247
[LDZT] terrestrial metagenome; oil reservoir sample SB1
4525
4451
-
Val
CAC
[ENA]
¢þ
>WENV170677416
LDZT01005350
[LDZT] terrestrial metagenome; oil reservoir sample SB1
3855
3781
-
Val
CAC
[ENA]
¢þ
>WENV170678858
LDZU01005511
[LDZU] terrestrial metagenome; oil reservoir sample SB2
4525
4451
-
Val
CAC
[ENA]
¢þ
>WENV170678887
LDZU01005739
[LDZU] terrestrial metagenome; oil reservoir sample SB2
148
74
-
Val
CAC
[ENA]
¢þ
>W09100958
AADT03000035
Bacillota
Moorella thermoacetica ATCC 39073 [AADT]
3496
3570
+
Val
CAC
[ENA]
¡û
>C191073419
CP031054
Bacillota
Moorella thermoacetica 39073-HH [CP031054]
384088
384162
+
Val
CAC
-
¡û
>W1810010425
BFFN01000003
Bacillota
Moorella sp. Hama-1 [BFFN]
108852
108926
+
Val
CAC
[ENA]
¡û
>C151094348
CP012369
Bacillota
Moorella thermoacetica DSM 521 [CP012369]
289209
289283
+
Val
CAC
-
¡û
>C151094398
CP012370
Bacillota
Moorella thermoacetica DSM 2955 [CP012370]
377014
377088
+
Val
CAC
-
¡û
>C11107109
CP002770
Bacillota
Desulfofundulus kuznetsovii DSM 6115 [CP002770]
1827346
1827272
-
Val
CAC
[Ensembl]
¡û
>W1610613538
LGFZ01000002
Bacillota
Desulfotomaculum sp. 46_296 [LGFZ]
4525
4451
-
Val
CAC
[ENA]
¡û
>W1610613574
LGFZ01000105
Bacillota
Desulfotomaculum sp. 46_296 [LGFZ]
3855
3781
-
Val
CAC
[ENA]
¡û
>W1710588601
FQZM01000066
Bacillota
Desulfofundulus thermosubterraneus DSM 16057 [FQZM]
2788
2714
-
Val
CAC
[ENA]
¡û
>W1710734710
LGFZ01000002
Bacillota
Desulfotomaculum sp. 46_296 [LGFZ]
4525
4451
-
Val
CAC
[ENA]
¡û
>W1710734746
LGFZ01000105
Bacillota
Desulfotomaculum sp. 46_296 [LGFZ]
3855
3781
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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