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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.342709 (27 seq.)
>A171000872
CP001696
Euryarchaeota
Methanocaldococcus fervens AG86 [CP001696]
1015211
1015139
-
His
GTG
-
¡û
>A171001028
CP001787
Euryarchaeota
Methanocaldococcus vulcanius M7 [CP001787]
1575234
1575162
-
His
GTG
-
¡û
>A171001274
CP001901
Euryarchaeota
Methanocaldococcus sp. FS406-22 [CP001901]
1436717
1436645
-
His
GTG
-
¡û
>A171001493
CP002009
Euryarchaeota
Methanocaldococcus infernus ME [CP002009]
1155672
1155600
-
His
GTG
-
¡û
>A171002219
CP002737
Euryarchaeota
Methanotorris igneus Kol 5 [CP002737]
1395584
1395656
+
His
GTG
-
¡û
>A171004499
CP009149
Euryarchaeota
Methanocaldococcus bathoardescens JH146 [CP009149]
1176633
1176561
-
His
GTG
-
¡û
>WENV180275272
OBHT01001306
[OBHT] metagenome; hydrothermal vent
253
181
-
His
GTG
[ENA]
¢þ
>WENV180287238
OBIK01004153
[OBIK] hydrothermal vent metagenome; sea water
928
1002
+
His
GTG
[ENA]
¢þ
>WENV180288170
OBIL01070392
[OBIL] metagenome; hydrothermal vent
165
237
+
His
GTG
[ENA]
¢þ
>WENV180582230
OCMO01018696
[OCMO] metagenome; diffuse fluid
134
62
-
His
GTG
[ENA]
¢þ
>WENV181206211
OFAT01000356
[OFAT] metagenome; hydrothermal vent
3640
3712
+
His
GTG
[ENA]
¢þ
>WENV181207544
OFAZ01002514
[OFAZ] metagenome; hydrothermal vent
814
742
-
His
GTG
[ENA]
¢þ
>WENV181208724
OFBC01002690
[OFBC] metagenome; hydrothermal vent
558
630
+
His
GTG
[ENA]
¢þ
>WENV181212785
OFBU01000081
[OFBU] metagenome; hydrothermal vent
9266
9194
-
His
GTG
[ENA]
¢þ
>WENV181213333
OFBV01000505
[OFBV] metagenome; hydrothermal vent
992
920
-
His
GTG
[ENA]
¢þ
>WENV181214343
OFBX01003442
[OFBX] metagenome; hydrothermal vent
158
86
-
His
GTG
[ENA]
¢þ
>WENV181215174
OFBZ01006657
[OFBZ] metagenome; hydrothermal vent
1008
936
-
His
GTG
[ENA]
¢þ
>WENV181215846
OFCA01024452
[OFCA] metagenome; hydrothermal vent
517
445
-
His
GTG
[ENA]
¢þ
>WENV181216190
OFCB01008443
[OFCB] metagenome; hydrothermal vent
97
25
-
His
GTG
[ENA]
¢þ
>WENV181223952
OFDD01004492
[OFDD] metagenome; hydrothermal vent
1083
1011
-
His
GTG
[ENA]
¢þ
>At0933
L77117
Euryarchaeota
Methanocaldococcus jannaschii DSM 2661 [L77117]
638081
638152
+
His
GTG
[Ensembl]
¡û
>W1910067439
BFAX01000003
Euryarchaeota
Methanofervidicoccus abyssi HHB [BFAX]
100389
100317
-
His
GTG
[ENA]
¡û
>W1610001125
ACQW01000016
Euryarchaeota
Methanocaldococcus fervens AG86 [ACQW]
95
23
-
His
GTG
[ENA]
¡û
>W1610001158
ACQY01000017
Euryarchaeota
Methanocaldococcus infernus ME [ACQY]
133
61
-
His
GTG
[ENA]
¡û
>W1610001547
ACUW01000001
Euryarchaeota
Methanocaldococcus vulcanius M7 [ACUW]
644262
644334
+
His
GTG
[ENA]
¡û
>W1610001648
ADCA01000007
Euryarchaeota
Methanocaldococcus sp. FS406-22 [ADCA] FS406-22 [ADCA]
78058
78130
+
His
GTG
[ENA]
¡û
>W1610018649
AQUK01000001
Euryarchaeota
Methanocaldococcus villosus KIN24-T80 [AQUK]
683601
683529
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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