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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.342772 (113 seq.)
>W1710923716
LOBU02000014
Actinomycetota
Amycolatopsis regifaucium [LOBU]
409883
409955
+
Gln
CTG
[ENA]
¡û
>W1711190842
LWSF01000008
Actinomycetota
Amycolatopsis sp. M39 [LWSF]
63512
63440
-
Gln
CTG
[ENA]
¡û
>W1711662732
MQUQ01000010
Actinomycetota
Amycolatopsis coloradensis [MQUQ]
343853
343925
+
Gln
CTG
[ENA]
¡û
>W1711749210
MUMI01000134
Actinomycetota
Amycolatopsis kentuckyensis [MUMI]
34443
34515
+
Gln
CTG
[ENA]
¡û
>W1711749288
MUMJ01000508
Actinomycetota
Amycolatopsis lexingtonensis [MUMJ]
9175
9103
-
Gln
CTG
[ENA]
¡û
>W1711749326
MUMK01000136
Actinomycetota
Amycolatopsis pretoriensis [MUMK]
15757
15829
+
Gln
CTG
[ENA]
¡û
>C171046292
CP016174
Actinomycetota
Amycolatopsis orientalis B-37 [CP016174]
1907010
1907082
+
Gln
CTG
-
¡û
>W131064623
ANMG01000053
Actinomycetota
Amycolatopsis azurea DSM 43854 [ANMG]
63145
63217
+
Gln
CTG
[ENA]
¡û
>W131091950
AOHO01000055
Actinomycetota
Amycolatopsis decaplanina DSM 44594 [AOHO]
313992
313920
-
Gln
CTG
[ENA]
¡û
>W131100467
AOUO01000200
Actinomycetota
Amycolatopsis vancoresmycina DSM 44592 [AOUO]
3253
3181
-
Gln
CTG
[ENA]
¡û
>W131164028
ARAF01000001
Actinomycetota
Amycolatopsis alba DSM 44262 [ARAF]
1835197
1835125
-
Gln
CTG
[ENA]
¡û
>W131165093
ARBH01000007
Actinomycetota
Amycolatopsis balhimycina FH 1894 [ARBH]
1739628
1739700
+
Gln
CTG
[ENA]
¡û
>W131181798
ARPK01000004
Actinomycetota
Amycolatopsis benzoatilytica AK 16/65 [ARPK]
697786
697714
-
Gln
CTG
[ENA]
¡û
>W131191589
ASJB01000017
Actinomycetota
Amycolatopsis orientalis DSM 40040 = KCTC 9412 [ASJB]
213055
213127
+
Gln
CTG
[ENA]
¡û
>W131202830
ASXH01000020
Actinomycetota
Amycolatopsis orientalis DSM 46075 [ASXH]
55446
55518
+
Gln
CTG
[ENA]
¡û
>W131182556
ARQM01000010
Actinomycetota
Promicromonospora sukumoe 327MFSha3.1 [ARQM]
93109
93181
+
Gln
CTG
[ENA]
¡û
>WENV180023351
FTHV01001067
[FTHV] metagenome; soil
356
284
-
Gln
CTG
[ENA]
¢þ
>WENV180028837
FTJH01091525
[FTJH] metagenome; soil
73
1
-
Gln
CTG
[ENA]
¢þ
>WENV180033609
FTKL01000419
[FTKL] metagenome; soil
31010
30938
-
Gln
CTG
[ENA]
¢þ
>WENV180033613
FTKL01000419
[FTKL] metagenome; soil
30530
30456
-
Gln
CTG
[ENA]
¢þ
>WENV180193535
OAZW01000918
[OAZW] human gut metagenome; faeces
7548
7620
+
Gln
CTG
[ENA]
¢þ
>W141042854
AMEW01000023
Actinomycetota
Actinomyces sp. oral taxon 181 oral taxon 181 str. F0379 [AMEW]
6112
6186
+
Gln
CTG
[ENA]
¡û
>WENV180783590
ODIQ01012026
[ODIQ] human metagenome; G_DNA_Tongue dorsum
154
80
-
Gln
CTG
[ENA]
¢þ
>WENV180820289
ODJR01003753
[ODJR] human metagenome; G_DNA_Tongue dorsum
496
570
+
Gln
CTG
[ENA]
¢þ
>WENV180897407
ODNI01021079
[ODNI] human metagenome; G_DNA_Tongue dorsum
1047
1121
+
Gln
CTG
[ENA]
¢þ
>WENV180902710
ODOK01145675
[ODOK] human metagenome; G_DNA_Tongue dorsum
153
79
-
Gln
CTG
[ENA]
¢þ
>WENV180946119
ODUD01007881
[ODUD] human metagenome; G_DNA_Tongue dorsum
879
805
-
Gln
CTG
[ENA]
¢þ
>WENV181074978
OEAO01047821
[OEAO] human metagenome; G_DNA_Tongue dorsum
513
587
+
Gln
CTG
[ENA]
¢þ
>WENV181113283
OEEL01018033
[OEEL] human metagenome; G_DNA_Tongue dorsum
1314
1388
+
Gln
CTG
[ENA]
¢þ
>WENV181134826
OEGG01000255
[OEGG] human metagenome; G_DNA_Tongue dorsum
18509
18435
-
Gln
CTG
[ENA]
¢þ
>WENV181175630
OEJQ01011335
[OEJQ] human metagenome; G_DNA_Tongue dorsum
135
61
-
Gln
CTG
[ENA]
¢þ
>WENV181227979
OFDN01095384
[OFDN] hot springs metagenome; Water
478
404
-
Gln
CTG
[ENA]
¢þ
>W141220272
AZXR01000903
Actinomycetota
Promicromonospora kroppenstedtii DSM 19349 [AZXR]
1107
1035
-
Gln
CTG
[ENA]
¡û
>WENV182406666
OIFA01000049
[OIFA] human gut metagenome; stool
31109
31037
-
Gln
CTG
[ENA]
¢þ
>WENV182413097
OIFX01000063
[OIFX] human gut metagenome; stool
84907
84835
-
Gln
CTG
[ENA]
¢þ
>W141279309
JAGF01000001
Actinomycetota
Cellulomonas sp. KRMCY2 [JAGF]
3142589
3142661
+
Gln
CTG
[ENA]
¡û
>WENV182815278
OJYQ01000064
[OJYQ] human gut metagenome; human gut
23222
23294
+
Gln
CTG
[ENA]
¢þ
>WENV182842623
OKIF01000170
[OKIF] human gut metagenome; human gut
173
101
-
Gln
CTG
[ENA]
¢þ
>WENV182842651
OKIF01000272
[OKIF] human gut metagenome; human gut
9570
9642
+
Gln
CTG
[ENA]
¢þ
>WENV182859135
OKOL01000206
[OKOL] human gut metagenome; human gut
10714
10642
-
Gln
CTG
[ENA]
¢þ
>W141284062
JALM01000073
Actinomycetota
Sciscionella sp. SE31 [JALM]
88720
88792
+
Gln
CTG
[ENA]
¡û
>WENV183635402
OOIV01000004
[OOIV] human gut metagenome; Biopsy of a nasal polyp
275652
275580
-
Gln
CTG
[ENA]
¢þ
>WENV183790451
PPYF01411394
[PPYF] human gut metagenome; stool from patient with Crohn's disease
12721
12795
+
Gln
CTG
[ENA]
¢þ
>W141451921
JFBM01000024
Actinomycetota
Amycolatopsis lurida NRRL 2430 [JFBM]
57025
56953
-
Gln
CTG
[ENA]
¡û
>C181107771
CP024894
Actinomycetota
Amycolatopsis sp. AA4 [CP024894]
1456613
1456685
+
Gln
CTG
-
¡û
>C181171286
CP029001
Actinomycetota
Trueperella pyogenes TP4479 [CP029001]
1837662
1837734
+
Gln
CTG
-
¡û
>C181171513
CP029004
Actinomycetota
Trueperella pyogenes TP-2849 [CP029004]
2258410
2258482
+
Gln
CTG
-
¡û
>C191104230
CP033325
Actinomycetota
Georgenia faecalis ZLJ0423 [CP033325]
1006676
1006748
+
Gln
CTG
-
¡û
>C191114770
CP033903
Actinomycetota
Trueperella pyogenes TP2 [CP033903]
87775
87703
-
Gln
CTG
-
¡û
>C191114855
CP033905
Actinomycetota
Trueperella pyogenes TP4 [CP033905]
574417
574345
-
Gln
CTG
-
¡û
>W141711989
JMQG01000016
Actinomycetota
Amycolatopsis mediterranei [JMQG]
39788
39716
-
Gln
CTG
[ENA]
¡û
>W141712114
JMQI01000028
Actinomycetota
Amycolatopsis rifamycinica [JMQI]
278521
278449
-
Gln
CTG
[ENA]
¡û
>W141712158
JMQJ01000017
Actinomycetota
Amycolatopsis mediterranei [JMQJ]
39753
39681
-
Gln
CTG
[ENA]
¡û
>W09120716
ACEV01000013
Actinomycetota
Streptomyces sp. AA4 [ACEV]
339754
339826
+
Gln
CTG
[ENA]
¡û
>W141756140
JNWZ01000019
Actinomycetota
Kitasatospora phosalacinea [JNWZ]
8477
8551
+
Gln
CTG
[ENA]
¡û
>W141757842
JNYE01000026
Actinomycetota
Kitasatospora phosalacinea [JNYE]
61201
61127
-
Gln
CTG
[ENA]
¡û
>W141758931
JNYY01000010
Actinomycetota
Amycolatopsis vancoresmycina [JNYY]
119673
119601
-
Gln
CTG
[ENA]
¡û
>W141758977
JNYZ01000016
Actinomycetota
Amycolatopsis jejuensis [JNYZ]
175303
175375
+
Gln
CTG
[ENA]
¡û
>W141767541
JOER01000035
Actinomycetota
Kitasatospora aureofaciens [JOER]
62777
62703
-
Gln
CTG
[ENA]
¡û
>W141773714
JOIQ01000010
Actinomycetota
Streptomyces sp. NRRL F-3213 [JOIQ]
97085
97013
-
Gln
CTG
[ENA]
¡û
>W141806124
JPLW01000003
Actinomycetota
Amycolatopsis sp. MJM2582 [JPLW]
906727
906799
+
Gln
CTG
[ENA]
¡û
>W1910237208
FPKP01000001
Actinomycetota
Actinomyces urinae FC2 Marseille-P2225 [FPKP]
28790
28862
+
Gln
CTG
[ENA]
¡û
>W1910340143
FTLP01000013
Actinomycetota
Actinomyces marseillensis Marseille-P2818 [FTLP]
263474
263548
+
Gln
CTG
[ENA]
¡û
>C141001871
CP003777
Actinomycetota
Amycolatopsis mediterranei RB [CP003777]
1828720
1828792
+
Gln
CTG
[Ensembl]
¡û
>W1910618736
LJIW01000002
Actinomycetota
Streptomyces malaysiensis F913 [LJIW]
3953928
3953856
-
Gln
CTG
[ENA]
¡û
>W1910812640
MVFD01000001
Actinomycetota
Amycolatopsis sp. BJA-103 [MVFD]
1628465
1628537
+
Gln
CTG
[ENA]
¡û
>W1910994784
NKYE01000003
Actinomycetota
Amycolatopsis antarctica AU-G6 [NKYE]
260333
260405
+
Gln
CTG
[ENA]
¡û
>W1911071547
NMQT01000073
Actinomycetota
Amycolatopsis thailandensis JCM 16380 [NMQT]
101230
101302
+
Gln
CTG
[ENA]
¡û
>W1911075247
NMUL01000031
Actinomycetota
Amycolatopsis vastitatis H5 [NMUL]
131223
131295
+
Gln
CTG
[ENA]
¡û
>W1911243778
NSGV01000001
Actinomycetota
Streptomyces sp. TLI_235 [NSGV]
2679906
2679832
-
Gln
CTG
[ENA]
¡û
>W1911676653
QHHU01000037
Actinomycetota
Amycolatopsis balhimycina DSM 5908 [QHHU]
29455
29383
-
Gln
CTG
[ENA]
¡û
>W1911676819
QHHX01000004
Actinomycetota
Amycolatopsis sp. WAC 01416 [QHHX]
268639
268711
+
Gln
CTG
[ENA]
¡û
>W1911678693
QHJI01000009
Actinomycetota
Amycolatopsis sp. WAC 04169 [QHJI]
5458
5530
+
Gln
CTG
[ENA]
¡û
>W1911678797
QHJK01000004
Actinomycetota
Amycolatopsis sp. WAC 04197 [QHJK]
627978
628050
+
Gln
CTG
[ENA]
¡û
>W1911678917
QHJM01000015
Actinomycetota
Streptomyces sp. WAC 05977 [QHJM]
95579
95507
-
Gln
CTG
[ENA]
¡û
>W1911679694
QHKL01000002
Actinomycetota
Amycolatopsis sp. WAC 01376 [QHKL]
1065367
1065439
+
Gln
CTG
[ENA]
¡û
>W1911765536
QXCY01000001
Actinomycetota
Promicromonospora thailandica SAI-039 [QXCY]
3813182
3813254
+
Gln
CTG
[ENA]
¡û
>W1911814685
QZFV01000043
Actinomycetota
Amycolatopsis panacis YIM PH 21725 [QZFV]
132430
132502
+
Gln
CTG
[ENA]
¡û
>W1810058399
PDJK01000002
Actinomycetota
Amycolatopsis sulphurea DSM 46092 [PDJK]
644366
644294
-
Gln
CTG
[ENA]
¡û
>W1810090073
PGFE01000002
Actinomycetota
Sediminihabitans luteus DSM 25478 [PGFE]
54488
54560
+
Gln
CTG
[ENA]
¡û
>W1810173315
PJMY01000003
Actinomycetota
Amycolatopsis niigatensis DSM 45165 [PJMY]
1097741
1097669
-
Gln
CTG
[ENA]
¡û
>W1810237603
PPHF01000010
Actinomycetota
Amycolatopsis sp. CA-126428 [PPHF]
188165
188237
+
Gln
CTG
[ENA]
¡û
>W1810237662
PPHG01000040
Actinomycetota
Amycolatopsis sp. CA-128772 [PPHG]
10747
10675
-
Gln
CTG
[ENA]
¡û
>W1810365179
PVTW01000008
Actinomycetota
Isoptericola sp. CG 20/1183 CG 20 [PVTW]
191263
191191
-
Gln
CTG
[ENA]
¡û
>W1810365226
PVTX01000008
Actinomycetota
Isoptericola halotolerans CG 23 [PVTX]
191294
191222
-
Gln
CTG
[ENA]
¡û
>W1810676450
QKLZ01000020
Actinomycetota
Georgenia satyanarayanai CGMCC 1.10826 [QKLZ]
32604
32532
-
Gln
CTG
[ENA]
¡û
>C151018984
CP007219
Actinomycetota
Amycolatopsis lurida [CP007219]
5226171
5226099
-
Gln
CTG
-
¡û
>C151040842
CP008953
Actinomycetota
Amycolatopsis japonica MG417-CF17 [CP008953]
1669206
1669278
+
Gln
CTG
[Ensembl]
¡û
>W1510014181
BBPO01000073
Actinomycetota
Streptacidiphilus neutrinimicus NBRC 100921 [BBPO]
29399
29327
-
Gln
CTG
[ENA]
¡û
>C10100507
CP002000
Actinomycetota
Amycolatopsis mediterranei U32 [CP002000]
1820202
1820274
+
Gln
CTG
[Ensembl]
¡û
>C11100898
CP002896
Actinomycetota
Amycolatopsis mediterranei S699 [CP002896]
1820222
1820294
+
Gln
CTG
-
¡û
>W1511509602
JXRD01000006
Actinomycetota
Amycolatopsis orientalis B-37 [JXRD]
68568
68640
+
Gln
CTG
[ENA]
¡û
>W1511529100
JYJF01000163
Actinomycetota
Saccharothrix sp. ST-888 [JYJF]
149
223
+
Gln
CTG
[ENA]
¡û
>W1511529103
JYJF01000178
Actinomycetota
Saccharothrix sp. ST-888 [JYJF]
7434
7506
+
Gln
CTG
[ENA]
¡û
>W1511545271
JZKH01000082
Actinomycetota
Streptomyces rubellomurinus ATCC 31215 [JZKH]
30373
30299
-
Gln
CTG
[ENA]
¡û
>W1511594793
LBMC01000089
Actinomycetota
Jiangella alkaliphila KCTC 19222 [LBMC]
22646
22718
+
Gln
CTG
[ENA]
¡û
>C121015459
CP003729
Actinomycetota
Amycolatopsis mediterranei S699 [CP003729]
1828761
1828833
+
Gln
CTG
-
¡û
>W121126203
BAGU01000353
Actinomycetota
Promicromonosporaceae bacterium W15 [BAGU]
1224
1296
+
Gln
CTG
[ENA]
¡û
>W1610051086
BBGM01000544
Actinomycetota
Isoptericola variabilis JCM 11754 [BBGM]
548
476
-
Gln
CTG
[ENA]
¡û
>C131003640
CP003410
Actinomycetota
Amycolatopsis keratiniphila HCCB10007 [CP003410]
7005631
7005559
-
Gln
CTG
[Ensembl]
¡û
>W1610781203
LOBU01000005
Actinomycetota
Amycolatopsis regifaucium [LOBU]
14004
13932
-
Gln
CTG
[ENA]
¡û
>W1610857087
LQQC01000002
Actinomycetota
Brevibacterium ravenspurgense [LQQC]
89933
90007
+
Gln
CTG
[ENA]
¡û
>W1610992445
LWSF01000008
Actinomycetota
Amycolatopsis sp. M39 [LWSF]
63512
63440
-
Gln
CTG
[ENA]
¡û
>W1710047485
BBGM01000544
Actinomycetota
Isoptericola variabilis JCM 11754 [BBGM]
548
476
-
Gln
CTG
[ENA]
¡û
>W1710535467
FNSO01000004
Actinomycetota
Amycolatopsis tolypomycina [FNSO]
265126
265198
+
Gln
CTG
[ENA]
¡û
>W1710536162
FNTA01000004
Actinomycetota
Amycolatopsis lurida [FNTA]
5980882
5980954
+
Gln
CTG
[ENA]
¡û
>W1710538230
FNUJ01000012
Actinomycetota
Amycolatopsis pretoriensis [FNUJ]
223299
223371
+
Gln
CTG
[ENA]
¡û
>W1710549058
FOEF01000035
Actinomycetota
Amycolatopsis saalfeldensis [FOEF]
52696
52768
+
Gln
CTG
[ENA]
¡û
>W1710563380
FOPQ01000003
Actinomycetota
Amycolatopsis regifaucium [FOPQ]
409934
410006
+
Gln
CTG
[ENA]
¡û
>W1710571670
FOWC01000004
Actinomycetota
Amycolatopsis rubida [FOWC]
105408
105336
-
Gln
CTG
[ENA]
¡û
>W1710580366
FPJG01000006
Actinomycetota
Amycolatopsis australiensis [FPJG]
8384900
8384828
-
Gln
CTG
[ENA]
¡û
>W1710628089
JPRA01000050
Actinomycetota
Amycolatopsis mediterranei [JPRA]
15343
15271
-
Gln
CTG
[ENA]
¡û
>W1710773699
LIWC01000006
Actinomycetota
Amycolatopsis sp. CB00013 [LIWC]
121072
121000
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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