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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.342812 (22 seq.)
>WENV180224452
OBBJ01069574
[OBBJ] human gut metagenome; human gut
89
163
+
Glu
TTC
[ENA]
¢þ
>WENV180545474
OCIT01030027
[OCIT] human gut metagenome; human gut
198
124
-
Glu
TTC
[ENA]
¢þ
>W141088583
AUVG01000044
Bacillota
[Clostridium] cellulosi CS-4-4 [AUVG]
20397
20471
+
Glu
TTC
[ENA]
¡û
>WENV170684248
LFRM01028761
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
24095
24169
+
Glu
TTC
[ENA]
¢þ
>WENV170685545
LFRM01097365
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
261
187
-
Glu
TTC
[ENA]
¢þ
>WENV170717352
LSQX01032721
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
31601
31675
+
Glu
TTC
[ENA]
¢þ
>W1511564483
LADT01000068
Bacillota
Clostridiaceae bacterium BRH_c20a [LADT]
13346
13420
+
Glu
TTC
[ENA]
¡û
>W1511564485
LADT01000068
Bacillota
Clostridiaceae bacterium BRH_c20a [LADT]
13652
13726
+
Glu
TTC
[ENA]
¡û
>C161076026
CP014672
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum DSM 2910 [CP014672]
1360797
1360871
+
Glu
TTC
[Ensembl]
¡û
>C161076038
CP014672
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum DSM 2910 [CP014672]
2940053
2939979
-
Glu
TTC
[Ensembl]
¡û
>C161076074
CP014673
Bacillota
Thermoclostridium stercorarium subsp. leptospartum DSM 9219 [CP014673]
1381229
1381303
+
Glu
TTC
[Ensembl]
¡û
>C161076086
CP014673
Bacillota
Thermoclostridium stercorarium subsp. leptospartum DSM 9219 [CP014673]
3032301
3032227
-
Glu
TTC
[Ensembl]
¡û
>W1610043694
BAZZ01000001
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum JCM 9324 [BAZZ]
79321
79395
+
Glu
TTC
[ENA]
¡û
>W1610043730
BAZZ01000025
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum JCM 9324 [BAZZ]
20316
20390
+
Glu
TTC
[ENA]
¡û
>C131011042
CP003992
Bacillota
Thermoclostridium stercorarium subsp. stercorarium DSM 8532 [CP003992]
1359015
1359089
+
Glu
TTC
-
¡û
>C131011054
CP003992
Bacillota
Thermoclostridium stercorarium subsp. stercorarium DSM 8532 [CP003992]
2874482
2874408
-
Glu
TTC
-
¡û
>C131011908
CP004044
Bacillota
Thermoclostridium stercorarium subsp. stercorarium DSM 8532 [CP004044]
1359489
1359563
+
Glu
TTC
-
¡û
>C131011920
CP004044
Bacillota
Thermoclostridium stercorarium subsp. stercorarium DSM 8532 [CP004044]
2878743
2878669
-
Glu
TTC
-
¡û
>W1610605796
LFSH01000031
Bacillota
Clostridiales bacterium DTU070 [LFSH]
261
187
-
Glu
TTC
[ENA]
¡û
>W1710040854
BAZZ01000001
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum JCM 9324 [BAZZ]
79321
79395
+
Glu
TTC
[ENA]
¡û
>W1710040890
BAZZ01000025
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum JCM 9324 [BAZZ]
20316
20390
+
Glu
TTC
[ENA]
¡û
>W1710727083
LFSH01000031
Bacillota
Clostridiales bacterium DTU070 [LFSH]
261
187
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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