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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.342824 (118 seq.)
>W1711115592
LUAH01000067
Bacteroidota
Sphingobacterium sp. HMSC13C05 [LUAH]
69215
69287
+
Thr
GGT
[ENA]
¡û
>W1711179124
LWHJ01000011
Bacteroidota
Pedobacter psychrophilus CCM 8644 [LWHJ]
74252
74324
+
Thr
GGT
[ENA]
¡û
>W1711506331
MKWH01000054
Bacteroidota
Sphingobacterium sp. 40-24 [MKWH]
60623
60695
+
Thr
GGT
[ENA]
¡û
>W1711712793
MTCM01000005
Bacteroidota
Sphingobacterium sp. CZ-UAM [MTCM]
15122
15050
-
Thr
GGT
[ENA]
¡û
>C171057636
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
3285508
3285582
+
Thr
GGT
-
¡û
>C171118426
CP021381
Bacteroidota
Sphingobacterium sp. G1-14 [CP021381]
1040177
1040249
+
Thr
GGT
-
¡û
>W131145921
AQGK01000003
Bacteroidota
Pedobacter heparinus DSM 2366 [AQGK]
1856458
1856532
+
Thr
GGT
[ENA]
¡û
>W131205417
ATDL01000004
Bacteroidota
Sphingobacterium paucimobilis 1398 [ATDL]
228652
228726
+
Thr
GGT
[ENA]
¡û
>W131220007
ATZA01000004
Bacteroidota
Olivibacter sitiensis DSM 17696 [ATZA]
105902
105830
-
Thr
GGT
[ENA]
¡û
>w027802
ABCM01000011
Bacteroidota
Pedobacter sp. BAL39 [ABCM]
195743
195667
-
Thr
GGT
[ENA]
¡û
>W141027916
AKZJ01000001
Bacteroidota
Pedobacter arcticus A12 [AKZJ]
495955
496027
+
Thr
GGT
[ENA]
¡û
>W141075086
ASZT01000697
Bacteroidota
Sphingobacterium sp. IITKGP-BTPF85 [ASZT]
13867
13795
-
Thr
GGT
[ENA]
¡û
>W141142879
AWRU01000032
Bacteroidota
Pedobacter sp. V48 [AWRU]
34677
34603
-
Thr
GGT
[ENA]
¡û
>WENV183726593
PJTO01000028
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
120835
120907
+
Thr
GGT
[ENA]
¢þ
>WENV183726891
PJTO01000376
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
15530
15458
-
Thr
GGT
[ENA]
¢þ
>WENV183727774
PJTP01000190
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
15530
15458
-
Thr
GGT
[ENA]
¢þ
>WENV183728389
PJTQ01000038
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
120835
120907
+
Thr
GGT
[ENA]
¢þ
>WENV183728806
PJTQ01000464
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
15302
15230
-
Thr
GGT
[ENA]
¢þ
>WENV183729694
PJTR01000018
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
237290
237362
+
Thr
GGT
[ENA]
¢þ
>WENV183730731
PJTS01000406
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
27398
27470
+
Thr
GGT
[ENA]
¢þ
>WENV183730913
PJTS01001986
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
185
113
-
Thr
GGT
[ENA]
¢þ
>WENV183731515
PJTT01000013
[PJTT] soil metagenome; Soil (2) enriched on wood chips
48488
48416
-
Thr
GGT
[ENA]
¢þ
>WENV183732352
PJTX01000041
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
5637
5565
-
Thr
GGT
[ENA]
¢þ
>WENV183732686
PJTX01006171
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
330
402
+
Thr
GGT
[ENA]
¢þ
>WENV183732993
PJTY01000013
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
5637
5565
-
Thr
GGT
[ENA]
¢þ
>WENV183734067
PJTZ01000036
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
5637
5565
-
Thr
GGT
[ENA]
¢þ
>WENV183734715
PJTZ01050443
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
70
142
+
Thr
GGT
[ENA]
¢þ
>WENV183735098
PJUA01000893
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
7207
7279
+
Thr
GGT
[ENA]
¢þ
>WENV183735697
PJUB01000655
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
7207
7279
+
Thr
GGT
[ENA]
¢þ
>WENV183736289
PJUC01000422
[PJUC] soil metagenome; Soil enriched on filter paper
316
388
+
Thr
GGT
[ENA]
¢þ
>WENV183736394
PJUC01001755
[PJUC] soil metagenome; Soil enriched on filter paper
306
378
+
Thr
GGT
[ENA]
¢þ
>WENV183736962
PJUD01000134
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
79584
79656
+
Thr
GGT
[ENA]
¢þ
>WENV183738125
PJUD01087418
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
169
241
+
Thr
GGT
[ENA]
¢þ
>WENV183738364
PJUD01177031
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
278
350
+
Thr
GGT
[ENA]
¢þ
>WENV183738398
PJUD01188300
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
147
219
+
Thr
GGT
[ENA]
¢þ
>WENV183739448
PJUE01018021
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
307
379
+
Thr
GGT
[ENA]
¢þ
>WENV183739911
PJUF01000064
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
120835
120907
+
Thr
GGT
[ENA]
¢þ
>WENV183740845
PJUF01013307
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
167
239
+
Thr
GGT
[ENA]
¢þ
>WENV183741006
PJUF01026546
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
909
837
-
Thr
GGT
[ENA]
¢þ
>WENV183741160
PJUF01048528
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
90
18
-
Thr
GGT
[ENA]
¢þ
>WENV183741179
PJUF01051282
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
546
474
-
Thr
GGT
[ENA]
¢þ
>WENV183741447
PJUG01000013
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
15693
15621
-
Thr
GGT
[ENA]
¢þ
>WENV183741942
PJUH01000012
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
15693
15621
-
Thr
GGT
[ENA]
¢þ
>WENV183742592
PJUI01000019
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
15693
15621
-
Thr
GGT
[ENA]
¢þ
>WENV183743041
PJUJ01000012
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
933
861
-
Thr
GGT
[ENA]
¢þ
>WENV183743281
PJUJ01000308
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
29299
29371
+
Thr
GGT
[ENA]
¢þ
>WENV183743475
PJUJ01001844
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
449
377
-
Thr
GGT
[ENA]
¢þ
>WENV183743847
PJUK01000011
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
15693
15621
-
Thr
GGT
[ENA]
¢þ
>WENV183745287
PJUL01015668
[PJUL] feces metagenome; Chicken feces enriched on filter paper
297
225
-
Thr
GGT
[ENA]
¢þ
>WENV170010549
APMI01020157
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
6815
6741
-
Thr
GGT
[ENA]
¢þ
>WENV170995640
MWWF01030772
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
595
667
+
Thr
GGT
[ENA]
¢þ
>C181094359
CP024091
Bacteroidota
Pedobacter ginsengisoli T01R-27 [CP024091]
5220141
5220213
+
Thr
GGT
-
¡û
>W09109593
ABUJ01000003
Bacteroidota
Pedobacter heparinus DSM 2366 [ABUJ]
178833
178907
+
Thr
GGT
[ENA]
¡û
>W09123570
ACHA01000059
Bacteroidota
Sphingobacterium spiritivorum ATCC 33861 [ACHA]
31614
31542
-
Thr
GGT
[ENA]
¡û
>W09123603
ACHB01000007
Bacteroidota
Sphingobacterium spiritivorum ATCC 33300 [ACHB]
92593
92665
+
Thr
GGT
[ENA]
¡û
>C181225957
LT906468
Bacteroidota
Sphingobacterium mizutaii NCTC12149 [LT906468]
832640
832712
+
Thr
GGT
-
¡û
>C191157513
CP038029
Bacteroidota
Sphingobacterium psychroaquaticum SJ-25 [CP038029]
635382
635454
+
Thr
GGT
-
¡û
>C191158036
CP038159
Bacteroidota
Sphingobacterium sp. CZ-2 [CP038159]
2096418
2096490
+
Thr
GGT
-
¡û
>C191222342
LR590484
Bacteroidota
Sphingobacterium thalpophilum NCTC11429 [LR590484]
721354
721282
-
Thr
GGT
-
¡û
>C191226455
LS999839
Bacteroidota
Pedobacter schmidteae eg [LS999839]
6189315
6189243
-
Thr
GGT
-
¡û
>W141701964
JMLD01000012
Bacteroidota
Sphingobacterium thalpophilum DSM 11723 [JMLD]
285987
286059
+
Thr
GGT
[ENA]
¡û
>W1910377925
FUKU01000026
Bacteroidota
Sphingobacterium sp. JB170 [FUKU]
286526
286454
-
Thr
GGT
[ENA]
¡û
>W1910378059
FUKX01000027
Bacteroidota
Sphingobacterium faecium PCAi_F2.5 [FUKX]
13722
13650
-
Thr
GGT
[ENA]
¡û
>W1910664184
MBTA01000009
Bacteroidota
Pelobium manganitolerans YS-25 [MBTA]
10004
10076
+
Thr
GGT
[ENA]
¡û
>W1910664360
MCAQ01000004
Bacteroidota
Sphingobacterium siyangense T12B17 [MCAQ]
28324
28252
-
Thr
GGT
[ENA]
¡û
>C09108541
CP001681
Bacteroidota
Pedobacter heparinus DSM 2366 [CP001681]
993249
993323
+
Thr
GGT
[Ensembl]
¡û
>W1911136198
NOUX01000001
Bacteroidota
Sphingobacterium cellulitidis R-53603 [NOUX]
460288
460216
-
Thr
GGT
[ENA]
¡û
>W1911136251
NOUY01000002
Bacteroidota
Sphingobacterium cellulitidis R-53745 [NOUY]
145534
145462
-
Thr
GGT
[ENA]
¡û
>W1911496559
OCMT01000002
Bacteroidota
Pedobacter xixiisoli CGMCC 1.12803 [OCMT]
1101942
1101870
-
Thr
GGT
[ENA]
¡û
>W1911647395
QAJL01000002
Bacteroidota
Pedobacter sp. KBW06 [QAJL]
252755
252683
-
Thr
GGT
[ENA]
¡û
>W1810002575
BEYR01000005
Bacteroidota
Sphingobacterium sp. HMA12 [BEYR]
14569
14497
-
Thr
GGT
[ENA]
¡û
>W1810069024
PEAZ01000041
Bacteroidota
Sphingobacterium sp. 1.A.4 [PEAZ]
88092
88020
-
Thr
GGT
[ENA]
¡û
>W1810069093
PEBA01000045
Bacteroidota
Sphingobacterium sp. 1.A.5 [PEBA]
168214
168286
+
Thr
GGT
[ENA]
¡û
>W1810346480
PVBQ01000007
Bacteroidota
Sphingobacterium haloxyli 5JN-11 [PVBQ]
190896
190968
+
Thr
GGT
[ENA]
¡û
>W1810346602
PVBS01000003
Bacteroidota
Sphingobacterium gobiense ACCC 05757 [PVBS]
240940
241012
+
Thr
GGT
[ENA]
¡û
>W1810405031
PYLS01000006
Bacteroidota
Pedobacter yulinensis YL28-9 [PYLS]
367028
366956
-
Thr
GGT
[ENA]
¡û
>W1810474640
QAIL01000169
Bacteroidota
Pedobacter sp. HMWF019 [QAIL]
541
613
+
Thr
GGT
[ENA]
¡û
>W1810503681
QBKH01000010
Bacteroidota
Sphingobacterium faecium DSM 11690 [QBKH]
13700
13628
-
Thr
GGT
[ENA]
¡û
>W1810503924
QBKM01000006
Bacteroidota
Pedobacter sp. YR016 [QBKM]
113794
113866
+
Thr
GGT
[ENA]
¡û
>W1810531944
QCXX01000007
Bacteroidota
Sphingobacterium athyrii M46 [QCXX]
28889
28817
-
Thr
GGT
[ENA]
¡û
>W1810543347
QDKG01000001
Bacteroidota
Sphingobacterium corticibacter 2c-3 [QDKG]
178250
178322
+
Thr
GGT
[ENA]
¡û
>W1810564216
QEAS01000017
Bacteroidota
Pararcticibacter amylolyticus FJ4-8 [QEAS]
71934
71862
-
Thr
GGT
[ENA]
¡û
>W1810676157
QKLU01000006
Bacteroidota
Pedobacter nutrimenti DSM 27372 [QKLU]
172351
172423
+
Thr
GGT
[ENA]
¡û
>W1810704223
QMHN01000002
Bacteroidota
Pedobacter chitinilyticus CM134L-2 [QMHN]
472866
472794
-
Thr
GGT
[ENA]
¡û
>W1810704262
QMHO01000003
Bacteroidota
Pedobacter nanyangensis Q-4 [QMHO]
62861
62789
-
Thr
GGT
[ENA]
¡û
>W1810704320
QMHP01000008
Bacteroidota
Nubsella zeaxanthinifaciens TDMA-5 [QMHP]
182135
182207
+
Thr
GGT
[ENA]
¡û
>W1810720078
QNQU01000006
Bacteroidota
Pedobacter miscanthi RS10 [QNQU]
192328
192256
-
Thr
GGT
[ENA]
¡û
>W1810761073
QPKV01000004
Bacteroidota
Pedobacter chinensis JDX94 [QPKV]
544728
544800
+
Thr
GGT
[ENA]
¡û
>W1810789232
QRGB01000001
Bacteroidota
Pedobacter indicus SM1810 [QRGB]
1752683
1752755
+
Thr
GGT
[ENA]
¡û
>W1810885506
QUNJ01000004
Bacteroidota
Pedobacter sp. YR510 [QUNJ]
616624
616696
+
Thr
GGT
[ENA]
¡û
>W1511108310
JJMU01000012
Bacteroidota
Sphingobacterium deserti ACCC 05744 [JJMU]
63473
63401
-
Thr
GGT
[ENA]
¡û
>W1511352482
JROE01000005
Bacteroidota
Sphingobacteriaceae bacterium DW12 [JROE]
84712
84784
+
Thr
GGT
[ENA]
¡û
>W1511499230
JXAC01000010
Bacteroidota
Sphingobacterium sp. T2 [JXAC]
26885
26959
+
Thr
GGT
[ENA]
¡û
>W1511590248
LBGU01000023
Bacteroidota
Sphingobacterium sp. Ag1 [LBGU]
15378
15306
-
Thr
GGT
[ENA]
¡û
>W1511646557
LECU01000003
Bacteroidota
Pedobacter sp. BMA [LECU]
22920
22848
-
Thr
GGT
[ENA]
¡û
>C161049158
CP012996
Bacteroidota
Pedobacter sp. PACM 27299 PAMC 27299 [CP012996]
5431802
5431728
-
Thr
GGT
[Ensembl]
¡û
>W121063665
AJLG01000062
Bacteroidota
Pedobacter agri PB92 [AJLG]
10232
10304
+
Thr
GGT
[ENA]
¡û
>W1610612129
LGEL01000049
Bacteroidota
Pedobacter panaciterrae [LGEL]
4075
4149
+
Thr
GGT
[ENA]
¡û
>W1610867561
LQXS01000005
Bacteroidota
Sphingobacterium sp. CFCC 11742 [LQXS]
129864
129792
-
Thr
GGT
[ENA]
¡û
>W1610987076
LWHJ01000011
Bacteroidota
Pedobacter psychrophilus CCM 8644 [LWHJ]
74252
74324
+
Thr
GGT
[ENA]
¡û
>W1710519690
FNEX01000016
Bacteroidota
Pedobacter sp. ok626 [FNEX]
160677
160751
+
Thr
GGT
[ENA]
¡û
>W1710521463
FNGK01000003
Bacteroidota
Sphingobacterium mizutaii [FNGK]
26372
26446
+
Thr
GGT
[ENA]
¡û
>W1710522106
FNGY01000013
Bacteroidota
Pedobacter steynii [FNGY]
9762
9836
+
Thr
GGT
[ENA]
¡û
>W1710522139
FNGZ01000003
Bacteroidota
Pedobacter antarcticus [FNGZ]
501153
501225
+
Thr
GGT
[ENA]
¡û
>W1710538716
FNUT01000014
Bacteroidota
Sphingobacterium lactis [FNUT]
100427
100353
-
Thr
GGT
[ENA]
¡û
>W1710543112
FNZR01000001
Bacteroidota
Parapedobacter koreensis [FNZR]
704954
704882
-
Thr
GGT
[ENA]
¡û
>W1710543711
FOAF01000013
Bacteroidota
Olivibacter domesticus domesticum [FOAF]
46605
46533
-
Thr
GGT
[ENA]
¡û
>W1710551676
FOGG01000011
Bacteroidota
Pedobacter rhizosphaerae [FOGG]
79199
79125
-
Thr
GGT
[ENA]
¡û
>W1710555455
FOJM01000006
Bacteroidota
Pedobacter suwonensis [FOJM]
242024
242098
+
Thr
GGT
[ENA]
¡û
>W1710557931
FOLL01000002
Bacteroidota
Parapedobacter composti [FOLL]
313813
313741
-
Thr
GGT
[ENA]
¡û
>W1710560890
FONS01000013
Bacteroidota
Pedobacter antarcticus [FONS]
102717
102645
-
Thr
GGT
[ENA]
¡û
>W1710576386
FOZZ01000007
Bacteroidota
Sphingobacterium wenxiniae [FOZZ]
39825
39753
-
Thr
GGT
[ENA]
¡û
>W1710583252
FQUQ01000003
Bacteroidota
Pedobacter caeni [FQUQ]
890070
890144
+
Thr
GGT
[ENA]
¡û
>W1710603613
FUZF01000002
Bacteroidota
Sphingobacterium nematocida [FUZF]
268848
268922
+
Thr
GGT
[ENA]
¡û
>W1710606382
FWXT01000005
Bacteroidota
Pedobacter africanus [FWXT]
127190
127116
-
Thr
GGT
[ENA]
¡û
>W1710606800
FWYB01000011
Bacteroidota
Pedobacter nyackensis [FWYB]
31059
31133
+
Thr
GGT
[ENA]
¡û
>W1710608345
FXAU01000002
Bacteroidota
Sphingobacterium psychroaquaticum [FXAU]
317366
317292
-
Thr
GGT
[ENA]
¡û
>W1710733635
LGEL01000049
Bacteroidota
Pedobacter panaciterrae [LGEL]
4075
4149
+
Thr
GGT
[ENA]
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Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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