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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.342833 (80 seq.)
>W1711128542
LUSO01000001
Bacillota
Clostridium baratii [LUSO]
5040
4966
-
Asn
GTT
[ENA]
¡û
>W1711128543
LUSO01000001
Bacillota
Clostridium baratii [LUSO]
4926
4852
-
Asn
GTT
[ENA]
¡û
>W1711128544
LUSO01000001
Bacillota
Clostridium baratii [LUSO]
4810
4736
-
Asn
GTT
[ENA]
¡û
>W1711128546
LUSO01000002
Bacillota
Clostridium baratii [LUSO]
619694
619620
-
Asn
GTT
[ENA]
¡û
>W1711462063
MJHL01000010
Bacillota
Clostridium baratii [MJHL]
1177901
1177827
-
Asn
GTT
[ENA]
¡û
>W1711462096
MJHL01000027
Bacillota
Clostridium baratii [MJHL]
204340
204414
+
Asn
GTT
[ENA]
¡û
>W1711462097
MJHL01000027
Bacillota
Clostridium baratii [MJHL]
204454
204528
+
Asn
GTT
[ENA]
¡û
>W1711462098
MJHL01000027
Bacillota
Clostridium baratii [MJHL]
204570
204644
+
Asn
GTT
[ENA]
¡û
>W1711462100
MJHM01000002
Bacillota
Clostridium baratii [MJHM]
41
115
+
Asn
GTT
[ENA]
¡û
>W1711462162
MJHM01000023
Bacillota
Clostridium baratii [MJHM]
4877
4803
-
Asn
GTT
[ENA]
¡û
>W1711462163
MJHM01000023
Bacillota
Clostridium baratii [MJHM]
4763
4689
-
Asn
GTT
[ENA]
¡û
>W1711462164
MJHM01000023
Bacillota
Clostridium baratii [MJHM]
4647
4573
-
Asn
GTT
[ENA]
¡û
>W131092145
AOIF01000147
Bacillota
Clostridium saccharoperbutylacetonicum N1-4(HMT) [AOIF]
47220
47146
-
Asn
GTT
[ENA]
¡û
>W131092169
AOIF01000153
Bacillota
Clostridium saccharoperbutylacetonicum N1-4(HMT) [AOIF]
5785
5711
-
Asn
GTT
[ENA]
¡û
>W131092170
AOIF01000153
Bacillota
Clostridium saccharoperbutylacetonicum N1-4(HMT) [AOIF]
5455
5381
-
Asn
GTT
[ENA]
¡û
>W131092171
AOIF01000153
Bacillota
Clostridium saccharoperbutylacetonicum N1-4(HMT) [AOIF]
4859
4785
-
Asn
GTT
[ENA]
¡û
>W131232771
AUJN01000002
Bacillota
Clostridium butyricum AGR2140 [AUJN]
364
438
+
Asn
GTT
[ENA]
¡û
>W131232794
AUJN01000014
Bacillota
Clostridium butyricum AGR2140 [AUJN]
6371
6297
-
Asn
GTT
[ENA]
¡û
>W131232795
AUJN01000014
Bacillota
Clostridium butyricum AGR2140 [AUJN]
5598
5524
-
Asn
GTT
[ENA]
¡û
>W1711902953
MZGV01000025
Bacillota
Clostridium oryzae [MZGV]
21038
20964
-
Asn
GTT
[ENA]
¡û
>C171030617
CP014204
Bacillota
Clostridium baratii CDC51267 [CP014204]
1682659
1682585
-
Asn
GTT
-
¡û
>C171030618
CP014204
Bacillota
Clostridium baratii CDC51267 [CP014204]
1682545
1682471
-
Asn
GTT
-
¡û
>C171030619
CP014204
Bacillota
Clostridium baratii CDC51267 [CP014204]
1682430
1682356
-
Asn
GTT
-
¡û
>C171030647
CP014204
Bacillota
Clostridium baratii CDC51267 [CP014204]
1443282
1443208
-
Asn
GTT
-
¡û
>WENV180153155
OAUR01003955
[OAUR] human gut metagenome; faeces
1169
1095
-
Asn
GTT
[ENA]
¢þ
>WENV180327069
OBKS01374900
[OBKS] human gut metagenome; human gut
1
75
+
Asn
GTT
[ENA]
¢þ
>WENV180438378
OBWR01001658
[OBWR] human gut metagenome; faeces
1115
1041
-
Asn
GTT
[ENA]
¢þ
>WENV180456671
OBXR01002190
[OBXR] human gut metagenome; faeces
1400
1326
-
Asn
GTT
[ENA]
¢þ
>WENV180606197
OCPT01006791
[OCPT] human gut metagenome; human gut
109
183
+
Asn
GTT
[ENA]
¢þ
>WENV181166569
OEIU01000648
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
27182
27256
+
Asn
GTT
[ENA]
¢þ
>WENV181410660
OGCI01004668
[OGCI] hot springs metagenome; Hot spring water
6586
6658
+
Asn
GTT
[ENA]
¢þ
>WENV181788658
OGRO01002604
[OGRO] human gut metagenome; faeces
13588
13514
-
Asn
GTT
[ENA]
¢þ
>WENV181793887
OGRR01019526
[OGRR] human gut metagenome; faeces
186
260
+
Asn
GTT
[ENA]
¢þ
>WENV181875660
OGXC01000029
[OGXC] human gut metagenome; faeces
112550
112476
-
Asn
GTT
[ENA]
¢þ
>W141212251
AZQP01000033
Bacillota
Fervidicella metallireducens AeB [AZQP]
34333
34407
+
Asn
GTT
[ENA]
¡û
>W141212291
AZQP01000140
Bacillota
Fervidicella metallireducens AeB [AZQP]
51
125
+
Asn
GTT
[ENA]
¡û
>W141259138
CBYM010000060
Bacillota
Clostridium saudiense JCC [CBYM]
277
351
+
Asn
GTT
[ENA]
¡û
>WENV182763571
OJRO01022727
[OJRO] human gut metagenome; stool sample
765
691
-
Asn
GTT
[ENA]
¢þ
>WENV182952103
OKVV01002830
[OKVV] human gut metagenome; human gut
2976
2902
-
Asn
GTT
[ENA]
¢þ
>C08002604
CP001056
Bacillota
Clostridium botulinum B str. Eklund 17B [NRP] [CP001056]
194700
194774
+
Asn
GTT
[Ensembl]
¡û
>C08002605
CP001056
Bacillota
Clostridium botulinum B str. Eklund 17B [NRP] [CP001056]
195093
195167
+
Asn
GTT
[Ensembl]
¡û
>C08002606
CP001056
Bacillota
Clostridium botulinum B str. Eklund 17B [NRP] [CP001056]
195473
195547
+
Asn
GTT
[Ensembl]
¡û
>WENV183103740
OLNJ01005698
[OLNJ] human gut metagenome; faeces
3047
2973
-
Asn
GTT
[ENA]
¢þ
>WENV183173405
OLPD01003726
[OLPD] human gut metagenome; faeces
1252
1178
-
Asn
GTT
[ENA]
¢þ
>WENV183197089
OLPU01013232
[OLPU] human gut metagenome; faeces
110
184
+
Asn
GTT
[ENA]
¢þ
>WENV183234089
OLQV01010953
[OLQV] human gut metagenome; faeces
110
184
+
Asn
GTT
[ENA]
¢þ
>WENV183238160
OLQY01007516
[OLQY] human gut metagenome; faeces
3136
3062
-
Asn
GTT
[ENA]
¢þ
>WENV183241348
OLRA01107211
[OLRA] human gut metagenome; faeces
472
398
-
Asn
GTT
[ENA]
¢þ
>WENV183607694
OODO01035984
[OODO] human gut metagenome; human gut
690
616
-
Asn
GTT
[ENA]
¢þ
>WENV170563125
CZCB01010438
[CZCB] anaerobic digester metagenome; anaerobic digester
3678
3604
-
Asn
GTT
[ENA]
¢þ
>WENV170563277
CZCB01013441
[CZCB] anaerobic digester metagenome; anaerobic digester
2042
2116
+
Asn
GTT
[ENA]
¢þ
>C191184246
CP040924
Bacillota
Clostridium thermarum SYSU GA15002 [CP040924]
243647
243721
+
Asn
GTT
-
¡û
>C191184274
CP040924
Bacillota
Clostridium thermarum SYSU GA15002 [CP040924]
3412406
3412332
-
Asn
GTT
-
¡û
>C191184308
CP040924
Bacillota
Clostridium thermarum SYSU GA15002 [CP040924]
2788322
2788248
-
Asn
GTT
-
¡û
>W09133464
ACPD01000008
Bacillota
Clostridium cellulovorans 743B [ACPD]
128364
128290
-
Asn
GTT
[ENA]
¡û
>W1910213041
FMJL01000012
Bacillota
Clostridium sp. N3C [FMJL]
50216
50290
+
Asn
GTT
[ENA]
¡û
>C151014194
CP006905
Bacillota
Clostridium baratii str. Sullivan [CP006905]
1401373
1401447
+
Asn
GTT
[Ensembl]
¡û
>C151014195
CP006905
Bacillota
Clostridium baratii str. Sullivan [CP006905]
1401487
1401561
+
Asn
GTT
[Ensembl]
¡û
>C151014222
CP006905
Bacillota
Clostridium baratii str. Sullivan [CP006905]
1648873
1648947
+
Asn
GTT
[Ensembl]
¡û
>C10102807
CP002160
Bacillota
Clostridium cellulovorans 743B [CP002160]
4547408
4547334
-
Asn
GTT
[Ensembl]
¡û
>C10102815
CP002160
Bacillota
Clostridium cellulovorans 743B [CP002160]
3433540
3433466
-
Asn
GTT
[Ensembl]
¡û
>W11184353
BABR01000494
Bacillota
Clostridium cellulovorans 743B [BABR]
9
83
+
Asn
GTT
[ENA]
¡û
>W1610099901
CYYT01000018
Bacillota
Clostridium disporicum [CYYT]
68848
68774
-
Asn
GTT
[ENA]
¡û
>W1610103117
CZAV01000001
Bacillota
Clostridium baratii [CZAV]
1732220
1732146
-
Asn
GTT
[ENA]
¡û
>W1610103176
CZAV01000011
Bacillota
Clostridium baratii [CZAV]
14643
14717
+
Asn
GTT
[ENA]
¡û
>W1610103177
CZAV01000011
Bacillota
Clostridium baratii [CZAV]
14757
14831
+
Asn
GTT
[ENA]
¡û
>W1610103178
CZAV01000011
Bacillota
Clostridium baratii [CZAV]
14872
14946
+
Asn
GTT
[ENA]
¡û
>W1610616857
LGRR01000022
Bacillota
Clostridium baratii [LGRR]
1038845
1038771
-
Asn
GTT
[ENA]
¡û
>W1610616875
LGRR01000026
Bacillota
Clostridium baratii [LGRR]
5019
4945
-
Asn
GTT
[ENA]
¡û
>W1610616876
LGRR01000026
Bacillota
Clostridium baratii [LGRR]
4905
4831
-
Asn
GTT
[ENA]
¡û
>W1610616877
LGRR01000026
Bacillota
Clostridium baratii [LGRR]
4790
4716
-
Asn
GTT
[ENA]
¡û
>W1710102656
CYYT01000018
Bacillota
Clostridium disporicum [CYYT]
68848
68774
-
Asn
GTT
[ENA]
¡û
>W1710105872
CZAV01000001
Bacillota
Clostridium baratii [CZAV]
1732220
1732146
-
Asn
GTT
[ENA]
¡û
>W1710105931
CZAV01000011
Bacillota
Clostridium baratii [CZAV]
14643
14717
+
Asn
GTT
[ENA]
¡û
>W1710105932
CZAV01000011
Bacillota
Clostridium baratii [CZAV]
14757
14831
+
Asn
GTT
[ENA]
¡û
>W1710105933
CZAV01000011
Bacillota
Clostridium baratii [CZAV]
14872
14946
+
Asn
GTT
[ENA]
¡û
>W1710742196
LGRR01000022
Bacillota
Clostridium baratii [LGRR]
1038845
1038771
-
Asn
GTT
[ENA]
¡û
>W1710742214
LGRR01000026
Bacillota
Clostridium baratii [LGRR]
5019
4945
-
Asn
GTT
[ENA]
¡û
>W1710742215
LGRR01000026
Bacillota
Clostridium baratii [LGRR]
4905
4831
-
Asn
GTT
[ENA]
¡û
>W1710742216
LGRR01000026
Bacillota
Clostridium baratii [LGRR]
4790
4716
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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