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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.342874 (67 seq.)
>W1711187730
LWPS01000079
Bacillota
Clostridium sp. HMSC19A10 [LWPS]
21752
21826
+
Arg
CCT
[ENA]
¡û
>W1711293861
LZYZ01000001
Bacillota
Clostridium saccharobutylicum [LZYZ]
1236370
1236296
-
Arg
CCT
[ENA]
¡û
>W1711293988
LZZA01000103
Bacillota
Clostridium saccharobutylicum [LZZA]
20505
20579
+
Arg
CCT
[ENA]
¡û
>W131001778
AGYK01000024
Bacillota
Clostridium butyricum 60E.3 [AGYK]
21971
22045
+
Arg
CCT
[ENA]
¡û
>W131110820
APKZ01000073
Bacillota
Clostridium butyricum DKU-01 [APKZ]
14213
14287
+
Arg
CCT
[ENA]
¡û
>W131156825
AQQF01000145
Bacillota
Clostridium butyricum DSM 10702 [AQQF]
11609
11683
+
Arg
CCT
[ENA]
¡û
>W131232798
AUJN01000018
Bacillota
Clostridium butyricum AGR2140 [AUJN]
22154
22228
+
Arg
CCT
[ENA]
¡û
>C171021718
CP013239
Bacillota
Clostridium butyricum CDC_51208 [CP013239]
514325
514399
+
Arg
CCT
-
¡û
>C171045634
CP016086
Bacillota
Clostridium saccharobutylicum NCP 200 [CP016086]
5013183
5013109
-
Arg
CCT
-
¡û
>C171045786
CP016089
Bacillota
Clostridium saccharobutylicum BAS/B3/SW/136 [CP016089]
5013560
5013486
-
Arg
CCT
-
¡û
>C171045948
CP016091
Bacillota
Clostridium saccharobutylicum NCP 258 [CP016091]
4856910
4856836
-
Arg
CCT
-
¡û
>C171046037
CP016092
Bacillota
Clostridium saccharobutylicum NCP 195 [CP016092]
5013793
5013719
-
Arg
CCT
-
¡û
>C171047608
CP016332
Bacillota
Clostridium butyricum TK520 [CP016332, CP016333]
3575397
3575323
-
Arg
CCT
-
¡û
>WENV180280038
OBHX01206581
[OBHX] metagenome; feces
288
362
+
Arg
CCT
[ENA]
¢þ
>WENV180334105
OBLF01004894
[OBLF] metagenome; feces
6750
6824
+
Arg
CCT
[ENA]
¢þ
>WENV180347938
OBLO01001953
[OBLO] metagenome; feces
3934
4008
+
Arg
CCT
[ENA]
¢þ
>WENV180413603
OBVB01019258
[OBVB] human gut metagenome; faeces
223
149
-
Arg
CCT
[ENA]
¢þ
>W08001342
ABDT01000077
Bacillota
Clostridium butyricum 5521 [ABDT]
16159
16233
+
Arg
CCT
[ENA]
¡û
>WENV181555134
OGIT01000039
[OGIT] metagenome; Human gut stool
21902
21976
+
Arg
CCT
[ENA]
¢þ
>WENV181798385
OGRV01000113
[OGRV] human gut metagenome; fecal sample 3 from infant 4
11575
11649
+
Arg
CCT
[ENA]
¢þ
>WENV181798832
OGRX01000437
[OGRX] human gut metagenome; fecal sample 2 from infant 8
9798
9724
-
Arg
CCT
[ENA]
¢þ
>WENV181801516
OGSB01000445
[OGSB] human gut metagenome; fecal sample 5 from infant 3
11559
11633
+
Arg
CCT
[ENA]
¢þ
>WENV181802016
OGSC01001178
[OGSC] human gut metagenome; fecal sample 8 from infant 5
6444
6518
+
Arg
CCT
[ENA]
¢þ
>WENV181805089
OGSH01000549
[OGSH] human gut metagenome; fecal sample 5 from infant 6
6497
6571
+
Arg
CCT
[ENA]
¢þ
>WENV181805344
OGSI01000129
[OGSI] human gut metagenome; fecal sample 4 from infant 8
21776
21850
+
Arg
CCT
[ENA]
¢þ
>WENV181805744
OGSJ01000380
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
26069
25995
-
Arg
CCT
[ENA]
¢þ
>WENV181807816
OGSQ01000253
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
6420
6494
+
Arg
CCT
[ENA]
¢þ
>WENV181809496
OGST01000326
[OGST] human gut metagenome; fecal sample 7 from infant 6
26069
25995
-
Arg
CCT
[ENA]
¢þ
>WENV181810578
OGSV01000268
[OGSV] human gut metagenome; fecal sample 4 from infant 3
6415
6489
+
Arg
CCT
[ENA]
¢þ
>WENV181811219
OGSY01000280
[OGSY] human gut metagenome; fecal sample 5 from infant 8
26069
25995
-
Arg
CCT
[ENA]
¢þ
>WENV181811645
OGSZ01000191
[OGSZ] human gut metagenome; fecal sample 3 from infant 8
6505
6579
+
Arg
CCT
[ENA]
¢þ
>WENV181813744
OGTD01000505
[OGTD] human gut metagenome; fecal sample 1 from infant 3
328
402
+
Arg
CCT
[ENA]
¢þ
>WENV181814458
OGTG01000182
[OGTG] human gut metagenome; fecal sample 1 from infant 4
23750
23676
-
Arg
CCT
[ENA]
¢þ
>WENV181815024
OGTI01000112
[OGTI] human gut metagenome; fecal sample 5 from infant 1
9043
9117
+
Arg
CCT
[ENA]
¢þ
>WENV181817483
OGTN01000246
[OGTN] human gut metagenome; fecal sample 5 from infant 4
6418
6492
+
Arg
CCT
[ENA]
¢þ
>WENV181818290
OGTS01000150
[OGTS] human gut metagenome; fecal sample 4 from infant 4
23750
23676
-
Arg
CCT
[ENA]
¢þ
>WENV181818584
OGTT01000207
[OGTT] human gut metagenome; fecal sample 6 from infant 8
9831
9757
-
Arg
CCT
[ENA]
¢þ
>WENV181818897
OGTU01000120
[OGTU] human gut metagenome; fecal sample 6 from infant 4
23748
23674
-
Arg
CCT
[ENA]
¢þ
>WENV181822986
OGUH01001458
[OGUH] human gut metagenome; fecal sample 3 from infant 3
2702
2776
+
Arg
CCT
[ENA]
¢þ
>W141206259
AZLX01000202
Bacillota
Clostridium butyricum DORA_1 [AZLX]
8706
8632
-
Arg
CCT
[ENA]
¡û
>W141259010
CBYK010000018
Bacillota
Clostridium butyricum [CBYK]
113049
112975
-
Arg
CCT
[ENA]
¡û
>WENV182944643
OKVJ01000860
[OKVJ] human gut metagenome; human gut
5513
5439
-
Arg
CCT
[ENA]
¢þ
>WENV182952950
OKVX01000762
[OKVX] human gut metagenome; human gut
9894
9820
-
Arg
CCT
[ENA]
¢þ
>WENV183780933
PPYF01188336
[PPYF] human gut metagenome; stool from patient with Crohn's disease
12374
12448
+
Arg
CCT
[ENA]
¢þ
>C191171200
CP039702
Bacillota
Clostridium butyricum [CP039702]
3771291
3771217
-
Arg
CCT
-
¡û
>C191171334
CP039705
Bacillota
Clostridium butyricum 4-1 [CP039705]
1707964
1707890
-
Arg
CCT
-
¡û
>W09132903
ACOM01000012
Bacillota
Clostridium butyricum E4 str. BoNT E BL5262 [ACOM]
65086
65012
-
Arg
CCT
[ENA]
¡û
>C141007640
CP006721
Bacillota
Clostridium saccharobutylicum DSM 13864 [CP006721]
5013791
5013717
-
Arg
CCT
[Ensembl]
¡û
>W1910637978
LRDH01000095
Bacillota
Clostridium butyricum 300064 [LRDH]
59258
59184
-
Arg
CCT
[ENA]
¡û
>W1810250565
PQCS01000206
Bacillota
Clostridium sp. 3-3 [PQCS]
5434
5508
+
Arg
CCT
[ENA]
¡û
>W1511350217
JRMA01000023
Bacillota
Clostridium butyricum INCQS635 [JRMA]
36873
36947
+
Arg
CCT
[ENA]
¡û
>W1511365593
JSEG01000013
Bacillota
Clostridium butyricum NOR 33234 [JSEG]
96529
96455
-
Arg
CCT
[ENA]
¡û
>W1511501350
JXBT01000001
Bacillota
Clostridium butyricum HM-68 [JXBT]
23059
23133
+
Arg
CCT
[ENA]
¡û
>W1511554777
JZWE01000158
Bacillota
Clostridium sp. IBUN22A [JZWE]
309
235
-
Arg
CCT
[ENA]
¡û
>W1511554827
JZWF01000038
Bacillota
Clostridium sp. IBUN125C [JZWF]
21912
21986
+
Arg
CCT
[ENA]
¡û
>W1511554900
JZWG01000155
Bacillota
Clostridium sp. IBUN13A [JZWG]
21858
21932
+
Arg
CCT
[ENA]
¡û
>W1511554955
JZWH01000049
Bacillota
Clostridium sp. IBUN62F [JZWH]
21815
21889
+
Arg
CCT
[ENA]
¡û
>C161054178
CP013252
Bacillota
Clostridium butyricum KNU-L09 [CP013252, CP013489]
211428
211354
-
Arg
CCT
-
¡û
>C161055931
CP013352
Bacillota
Clostridium butyricum JKY6D1 [CP013352, CP013353]
3726343
3726269
-
Arg
CCT
-
¡û
>C161076440
CP014704
Bacillota
Clostridium butyricum TOA [CP014704, CP014705]
3689574
3689500
-
Arg
CCT
-
¡û
>W1610020619
ASPQ01000017
Bacillota
Clostridium butyricum CWBI1009 [ASPQ]
286
360
+
Arg
CCT
[ENA]
¡û
>W1610030598
AYXL01000040
Bacillota
Clostridium saccharobutylicum DSM 13864 [AYXL]
20292
20366
+
Arg
CCT
[ENA]
¡û
>W1610104382
CZBQ01000054
Bacillota
Clostridium paraputrificum [CZBQ]
363
437
+
Arg
CCT
[ENA]
¡û
>W1610627644
LIDW01000014
Bacillota
Clostridium butyricum [LIDW]
82011
81937
-
Arg
CCT
[ENA]
¡û
>W1710027721
AYXL01000040
Bacillota
Clostridium saccharobutylicum DSM 13864 [AYXL]
20292
20366
+
Arg
CCT
[ENA]
¡û
>W1710107086
CZBQ01000054
Bacillota
Clostridium paraputrificum [CZBQ]
363
437
+
Arg
CCT
[ENA]
¡û
>W1710758771
LIDW01000014
Bacillota
Clostridium butyricum [LIDW]
82011
81937
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK