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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.343110 (12 seq.)
>C017356
CP000316
Betaproteobacteria
Polaromonas sp. JS666 [CP000316]
3136092
3136016
-
Arg
TCT
[Ensembl]
¡û
>WENV180033740
FTKL01068922
[FTKL] metagenome; soil
76
152
+
Arg
TCT
[ENA]
¡û
>C08007670
CP000316
Betaproteobacteria
Polaromonas sp. JS666 [CP000316]
3136092
3136019
-
Arg
TCT
[Ensembl]
¡û
>WENV170714940
LNFM01117365
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1032
956
-
Arg
TCT
[ENA]
¡û
>W09101600
AAFQ02000001
Betaproteobacteria
Polaromonas sp. JS666 [AAFQ]
815187
815111
-
Arg
TCT
[ENA]
¡û
>C231247356
CP087963
Betaproteobacteria
Polaromonas sp. P1(28)-13 [CP087963]
5922074
5922150
+
Arg
TCT
-
¡û
>C231247405
CP087964
Betaproteobacteria
Polaromonas sp. P1(28)-8 [CP087964]
3289285
3289209
-
Arg
TCT
-
¡û
>C231247431
CP087965
Betaproteobacteria
Polaromonas sp. P2-4 [CP087965]
5589888
5589964
+
Arg
TCT
-
¡û
>C231247471
CP087966
Betaproteobacteria
Polaromonas sp. P1-6 [CP087966]
5830849
5830925
+
Arg
TCT
-
¡û
>W121084930
AKIV01000100
Betaproteobacteria
Polaromonas sp. CF318 [AKIV]
16548
16472
-
Arg
TCT
[ENA]
¡û
>W1710523386
FNHX01000001
Betaproteobacteria
Polaromonas sp. JS666 [FNHX]
139568
139492
-
Arg
TCT
[ENA]
¡û
>W1710578302
FPBM01000002
Betaproteobacteria
Polaromonas sp. YR568 [FPBM]
257945
257869
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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