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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.343111 (13 seq.)
>W1711751205
MUNO01000016
Betaproteobacteria
Polaromonas sp. A23 [MUNO]
3074
2998
-
Gln
TTG
[ENA]
¡û
>C017362
CP000316
Betaproteobacteria
Polaromonas sp. JS666 [CP000316]
1336209
1336133
-
Gln
TTG
[Ensembl]
¡û
>WENV180033797
FTKL01227148
[FTKL] metagenome; soil
160
84
-
Gln
TTG
[ENA]
¡û
>C08007676
CP000316
Betaproteobacteria
Polaromonas sp. JS666 [CP000316]
1336209
1336136
-
Gln
TTG
[Ensembl]
¡û
>C191073159
CP031013
Betaproteobacteria
Polaromonas sp. SP1 [CP031013]
446242
446318
+
Gln
TTG
-
¡û
>W09101631
AAFQ02000010
Betaproteobacteria
Polaromonas sp. JS666 [AAFQ]
88798
88874
+
Gln
TTG
[ENA]
¡û
>C201172342
CP046023
Betaproteobacteria
Polaromonas sp. Pch-P [CP046023]
1548708
1548632
-
Gln
TTG
-
¡û
>C231247411
CP087964
Betaproteobacteria
Polaromonas sp. P1(28)-8 [CP087964]
1364138
1364062
-
Gln
TTG
-
¡û
>W121084899
AKIV01000010
Betaproteobacteria
Polaromonas sp. CF318 [AKIV]
23676
23752
+
Gln
TTG
[ENA]
¡û
>W1610076185
BCYO01000001
Betaproteobacteria
Polaromonas jejuensis NBRC 106434 [BCYO]
522381
522305
-
Gln
TTG
[ENA]
¡û
>W1710074000
BCYO01000001
Betaproteobacteria
Polaromonas jejuensis NBRC 106434 [BCYO]
522381
522305
-
Gln
TTG
[ENA]
¡û
>W1710523401
FNHX01000003
Betaproteobacteria
Polaromonas sp. JS666 [FNHX]
503098
503022
-
Gln
TTG
[ENA]
¡û
>W1710578339
FPBM01000017
Betaproteobacteria
Polaromonas sp. YR568 [FPBM]
19391
19315
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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