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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.343140 (73 seq.)
>W1711090548
LTAV01000001
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
96
170
+
Gln
TTG
[ENA]
¡û
>W1711090592
LTAV01000023
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
346
272
-
Gln
TTG
[ENA]
¡û
>W1711090594
LTAV01000023
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
165
91
-
Gln
TTG
[ENA]
¡û
>W1711090625
LTAV01000067
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
172
98
-
Gln
TTG
[ENA]
¡û
>C013000
CP000749
Gammaproteobacteria
Marinomonas sp. MWYL1 [CP000749]
4071793
4071867
+
Gln
TTG
[Ensembl]
¡û
>C013002
CP000749
Gammaproteobacteria
Marinomonas sp. MWYL1 [CP000749]
4071965
4072039
+
Gln
TTG
[Ensembl]
¡û
>C013004
CP000749
Gammaproteobacteria
Marinomonas sp. MWYL1 [CP000749]
4072172
4072246
+
Gln
TTG
[Ensembl]
¡û
>W141284705
JAMB01000020
Gammaproteobacteria
Marinomonas ushuaiensis DSM 15871 [JAMB]
12812
12738
-
Gln
TTG
[ENA]
¡û
>W141284707
JAMB01000020
Gammaproteobacteria
Marinomonas ushuaiensis DSM 15871 [JAMB]
12638
12564
-
Gln
TTG
[ENA]
¡û
>W141284709
JAMB01000020
Gammaproteobacteria
Marinomonas ushuaiensis DSM 15871 [JAMB]
12432
12358
-
Gln
TTG
[ENA]
¡û
>WENV170210429
CEPV01203694
[CEPV] marine metagenome genome assembly TARA_039_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
406
332
-
Gln
TTG
[ENA]
¢þ
>WENV170928628
MDTG01136690
[MDTG] marine metagenome; seawater
3415
3341
-
Gln
TTG
[ENA]
¢þ
>C191039799
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
3191136
3191210
+
Gln
TTG
-
¡û
>C191039801
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
3191312
3191386
+
Gln
TTG
-
¡û
>C191039803
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
3191516
3191590
+
Gln
TTG
-
¡û
>W09106452
AAVH01000007
Gammaproteobacteria
Marinomonas sp. MWYL1 [AAVH]
222892
222966
+
Gln
TTG
[ENA]
¡û
>W09106454
AAVH01000007
Gammaproteobacteria
Marinomonas sp. MWYL1 [AAVH]
223075
223149
+
Gln
TTG
[ENA]
¡û
>W1910584856
JYBL01000034
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
14827
14753
-
Gln
TTG
[ENA]
¡û
>W1910584858
JYBL01000034
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
14654
14580
-
Gln
TTG
[ENA]
¡û
>W1910584860
JYBL01000034
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
14448
14374
-
Gln
TTG
[ENA]
¡û
>W1910914894
NHTT01000017
Gammaproteobacteria
Marinomonas sp. ef1 [NHTT]
14801
14727
-
Gln
TTG
[ENA]
¡û
>W1910914896
NHTT01000017
Gammaproteobacteria
Marinomonas sp. ef1 [NHTT]
14628
14554
-
Gln
TTG
[ENA]
¡û
>W1910914898
NHTT01000017
Gammaproteobacteria
Marinomonas sp. ef1 [NHTT]
14422
14348
-
Gln
TTG
[ENA]
¡û
>W1810676287
QKLW01000014
Gammaproteobacteria
Marinomonas alcarazii CECT 7730 [QKLW]
27884
27958
+
Gln
TTG
[ENA]
¡û
>W1810676289
QKLW01000014
Gammaproteobacteria
Marinomonas alcarazii CECT 7730 [QKLW]
28060
28134
+
Gln
TTG
[ENA]
¡û
>W1810676291
QKLW01000014
Gammaproteobacteria
Marinomonas alcarazii CECT 7730 [QKLW]
28264
28338
+
Gln
TTG
[ENA]
¡û
>W1810720382
QNRF01000017
Gammaproteobacteria
Marinomonas aquiplantarum CECT 7732 [QNRF]
14928
14854
-
Gln
TTG
[ENA]
¡û
>W1810720384
QNRF01000017
Gammaproteobacteria
Marinomonas aquiplantarum CECT 7732 [QNRF]
14744
14670
-
Gln
TTG
[ENA]
¡û
>W1810721704
QNSE01000008
Gammaproteobacteria
Marinomonas rhizomae CECT 7377 [QNSE]
15211
15137
-
Gln
TTG
[ENA]
¡û
>W1810721706
QNSE01000008
Gammaproteobacteria
Marinomonas rhizomae CECT 7377 [QNSE]
15039
14965
-
Gln
TTG
[ENA]
¡û
>W1810721708
QNSE01000008
Gammaproteobacteria
Marinomonas rhizomae CECT 7377 [QNSE]
14851
14777
-
Gln
TTG
[ENA]
¡û
>W1810759736
QPJQ01000047
Gammaproteobacteria
Marinomonas foliarum CECT 7731 [QPJQ]
13275
13349
+
Gln
TTG
[ENA]
¡û
>W1810759738
QPJQ01000047
Gammaproteobacteria
Marinomonas foliarum CECT 7731 [QPJQ]
13448
13522
+
Gln
TTG
[ENA]
¡û
>W1810759740
QPJQ01000047
Gammaproteobacteria
Marinomonas foliarum CECT 7731 [QPJQ]
13641
13715
+
Gln
TTG
[ENA]
¡û
>C11115054
CP002771
Gammaproteobacteria
Marinomonas posidonica IVIA-Po-181 [CP002771]
769051
768977
-
Gln
TTG
[Ensembl]
¡û
>C11115056
CP002771
Gammaproteobacteria
Marinomonas posidonica IVIA-Po-181 [CP002771]
768873
768799
-
Gln
TTG
[Ensembl]
¡û
>C11115058
CP002771
Gammaproteobacteria
Marinomonas posidonica IVIA-Po-181 [CP002771]
768691
768617
-
Gln
TTG
[Ensembl]
¡û
>W1510741315
CYHG01000002
Gammaproteobacteria
Marinomonas fungiae JCM 18476 [CYHG]
452363
452289
-
Gln
TTG
[ENA]
¡û
>W1510741316
CYHG01000002
Gammaproteobacteria
Marinomonas fungiae JCM 18476 [CYHG]
451932
451858
-
Gln
TTG
[ENA]
¡û
>W1610503702
FLOB01000005
Gammaproteobacteria
Marinomonas spartinae [FLOB]
235487
235413
-
Gln
TTG
[ENA]
¡û
>W1610503704
FLOB01000005
Gammaproteobacteria
Marinomonas spartinae [FLOB]
235311
235237
-
Gln
TTG
[ENA]
¡û
>W1610503706
FLOB01000005
Gammaproteobacteria
Marinomonas spartinae [FLOB]
235140
235066
-
Gln
TTG
[ENA]
¡û
>W1610503749
FLOC01000001
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
63886
63960
+
Gln
TTG
[ENA]
¡û
>W1610503751
FLOC01000001
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
64063
64137
+
Gln
TTG
[ENA]
¡û
>W1610503753
FLOC01000001
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
64248
64322
+
Gln
TTG
[ENA]
¡û
>W1610503755
FLOC01000001
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
64438
64512
+
Gln
TTG
[ENA]
¡û
>W1610503988
FLOE01000002
Gammaproteobacteria
Marinomonas spartinae CECT 8887 [FLOE]
236743
236669
-
Gln
TTG
[ENA]
¡û
>W1610503990
FLOE01000002
Gammaproteobacteria
Marinomonas spartinae CECT 8887 [FLOE]
236567
236493
-
Gln
TTG
[ENA]
¡û
>W1610503992
FLOE01000002
Gammaproteobacteria
Marinomonas spartinae CECT 8887 [FLOE]
236396
236322
-
Gln
TTG
[ENA]
¡û
>W1610540073
JSEE01000022
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
31255
31329
+
Gln
TTG
[ENA]
¡û
>W1610540075
JSEE01000022
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
31434
31508
+
Gln
TTG
[ENA]
¡û
>W1610540077
JSEE01000022
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
31618
31692
+
Gln
TTG
[ENA]
¡û
>W1610632880
LIQF01000002
Gammaproteobacteria
Marinomonas fungiae [LIQF]
452363
452289
-
Gln
TTG
[ENA]
¡û
>W1610632881
LIQF01000002
Gammaproteobacteria
Marinomonas fungiae [LIQF]
451932
451858
-
Gln
TTG
[ENA]
¡û
>W1610924788
LTAV01000001
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
96
170
+
Gln
TTG
[ENA]
¡û
>W1610924832
LTAV01000023
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
346
272
-
Gln
TTG
[ENA]
¡û
>W1610924834
LTAV01000023
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
165
91
-
Gln
TTG
[ENA]
¡û
>W1610924865
LTAV01000067
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
172
98
-
Gln
TTG
[ENA]
¡û
>W1710496531
FLOB01000005
Gammaproteobacteria
Marinomonas spartinae [FLOB]
235487
235413
-
Gln
TTG
[ENA]
¡û
>W1710496533
FLOB01000005
Gammaproteobacteria
Marinomonas spartinae [FLOB]
235311
235237
-
Gln
TTG
[ENA]
¡û
>W1710496535
FLOB01000005
Gammaproteobacteria
Marinomonas spartinae [FLOB]
235140
235066
-
Gln
TTG
[ENA]
¡û
>W1710496578
FLOC01000001
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
63886
63960
+
Gln
TTG
[ENA]
¡û
>W1710496580
FLOC01000001
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
64063
64137
+
Gln
TTG
[ENA]
¡û
>W1710496582
FLOC01000001
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
64248
64322
+
Gln
TTG
[ENA]
¡û
>W1710496584
FLOC01000001
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
64438
64512
+
Gln
TTG
[ENA]
¡û
>W1710583997
FQVF01000028
Gammaproteobacteria
Marinomonas polaris DSM 16579 [FQVF]
38386
38460
+
Gln
TTG
[ENA]
¡û
>W1710583999
FQVF01000028
Gammaproteobacteria
Marinomonas polaris DSM 16579 [FQVF]
38559
38633
+
Gln
TTG
[ENA]
¡û
>W1710584001
FQVF01000028
Gammaproteobacteria
Marinomonas polaris DSM 16579 [FQVF]
38765
38839
+
Gln
TTG
[ENA]
¡û
>W1710643094
JSEE01000022
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
31255
31329
+
Gln
TTG
[ENA]
¡û
>W1710643096
JSEE01000022
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
31434
31508
+
Gln
TTG
[ENA]
¡û
>W1710643098
JSEE01000022
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
31618
31692
+
Gln
TTG
[ENA]
¡û
>W1710767312
LIQF01000002
Gammaproteobacteria
Marinomonas fungiae [LIQF]
452363
452289
-
Gln
TTG
[ENA]
¡û
>W1710767313
LIQF01000002
Gammaproteobacteria
Marinomonas fungiae [LIQF]
451932
451858
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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