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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.343157 (18 seq.)
>W1710892743
LNEB01000013
Bdellovibrionota
Bdellovibrionales bacterium Ga0074139 [LNEB]
72291
72217
-
Thr
GGT
[ENA]
¡û
>W1711124482
LUKD01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKD]
552085
552011
-
Thr
GGT
[ENA]
¡û
>W1711124518
LUKE01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKE]
469653
469579
-
Thr
GGT
[ENA]
¡û
>W1711124552
LUKF01000016
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKF]
293262
293188
-
Thr
GGT
[ENA]
¡û
>W1712010650
NELQ01000002
Bdellovibrionota
Bdellovibrio sp. SKB1291214 [NELQ]
1536087
1536013
-
Thr
GGT
[ENA]
¡û
>C001979
BX842601
Bdellovibrionota
Bdellovibrio bacteriovorus [BX842601]
2891786
2891712
-
Thr
GGT
[Ensembl]
¡û
>WENV181170890
OEIV010107682
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
526
452
-
Thr
GGT
[ENA]
¢þ
>WENV170709190
LNFM01000171
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
88218
88292
+
Thr
GGT
[ENA]
¢þ
>WENV170996757
MWWF01400250
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
383
309
-
Thr
GGT
[ENA]
¢þ
>C181047764
CP020946
Bdellovibrionota
Bdellovibrio bacteriovorus SSB218315 [CP020946]
888202
888276
+
Thr
GGT
-
¡û
>C151003368
CP002190
Bdellovibrionota
Bdellovibrio bacteriovorus W [CP002190]
2327624
2327550
-
Thr
GGT
[Ensembl]
¡û
>C151031154
CP007656
Bdellovibrionota
Bdellovibrio bacteriovorus 109J [CP007656]
46161
46087
-
Thr
GGT
[Ensembl]
¡û
>C151087493
CP011926
Bdellovibrionota
Bdellovibrio bacteriovorus [CP011926]
2795306
2795232
-
Thr
GGT
-
¡û
>C131001666
CP002930
Bdellovibrionota
Bdellovibrio bacteriovorus str. Tiberius [CP002930]
3077871
3077797
-
Thr
GGT
[Ensembl]
¡û
>W1610753009
LNEB01000013
Bdellovibrionota
Bdellovibrionales bacterium Ga0074139 [LNEB]
72291
72217
-
Thr
GGT
[ENA]
¡û
>W1610935422
LUKD01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKD]
552085
552011
-
Thr
GGT
[ENA]
¡û
>W1610935458
LUKE01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKE]
469653
469579
-
Thr
GGT
[ENA]
¡û
>W1610935492
LUKF01000016
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKF]
293262
293188
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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