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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.343384 (76 seq.)
>W1711067116
LSDN01000016
Actinomycetota
Varibaculum cambriense [LSDN]
11607
11682
+
Gly
GCC
[ENA]
¡û
>W1711767578
MVAC01000072
Actinomycetota
Nocardia seriolae [MVAC]
30157
30082
-
Gly
GCC
[ENA]
¡û
>W1711767594
MVAC01000201
Actinomycetota
Nocardia seriolae [MVAC]
8621
8696
+
Gly
GCC
[ENA]
¡û
>C171068233
CP017839
Actinomycetota
Nocardia seriolae EM150506 [CP017839]
6089211
6089286
+
Gly
GCC
-
¡û
>C171068235
CP017839
Actinomycetota
Nocardia seriolae EM150506 [CP017839]
6104955
6105030
+
Gly
GCC
-
¡û
>W131214500
ATUF01000002
Actinomycetota
Varibaculum cambriense DSM 15806 [ATUF]
67489
67414
-
Gly
GCC
[ENA]
¡û
>W131222002
AUAX01000019
Actinomycetota
Hamadaea tsunoensis DSM 44101 [AUAX]
9736
9809
+
Gly
GCC
[ENA]
¡û
>W131222004
AUAX01000019
Actinomycetota
Hamadaea tsunoensis DSM 44101 [AUAX]
585
512
-
Gly
GCC
[ENA]
¡û
>WENV180160496
OAVC01001384
[OAVC] human gut metagenome; faeces
1757
1830
+
Gly
GCC
[ENA]
¢þ
>WENV180172387
OAVX01001843
[OAVX] human gut metagenome; faeces
3513
3586
+
Gly
GCC
[ENA]
¢þ
>WENV180407238
OBUQ01000785
[OBUQ] human gut metagenome; faeces
11371
11298
-
Gly
GCC
[ENA]
¢þ
>WENV180438424
OBWS01000006
[OBWS] human gut metagenome; faeces
102098
102171
+
Gly
GCC
[ENA]
¢þ
>WENV180444171
OBWZ01000205
[OBWZ] human gut metagenome; faeces
11480
11407
-
Gly
GCC
[ENA]
¢þ
>WENV180483534
OBZH01001038
[OBZH] human gut metagenome; faeces
9711
9784
+
Gly
GCC
[ENA]
¢þ
>WENV180489721
OBZS01008447
[OBZS] human gut metagenome; faeces
641
714
+
Gly
GCC
[ENA]
¢þ
>WENV180490651
OBZU01009815
[OBZU] human gut metagenome; faeces
1124
1197
+
Gly
GCC
[ENA]
¢þ
>WENV180494010
OBZZ01002325
[OBZZ] human gut metagenome; faeces
1860
1933
+
Gly
GCC
[ENA]
¢þ
>WENV180498706
OCAG01001070
[OCAG] human gut metagenome; faeces
6186
6113
-
Gly
GCC
[ENA]
¢þ
>WENV181329025
OFLV01004214
[OFLV] metagenome; faeces
892
819
-
Gly
GCC
[ENA]
¢þ
>WENV181769719
OGRA01075499
[OGRA] human gut metagenome; faeces
89
16
-
Gly
GCC
[ENA]
¢þ
>W141199749
AYXG01000075
Actinomycetota
Actinokineospora spheciospongiae EG49 [AYXG]
12781
12854
+
Gly
GCC
[ENA]
¡û
>W141206508
AZMI01000001
Actinomycetota
Varibaculum cambriense DORA_20 [AZMI]
1062969
1062894
-
Gly
GCC
[ENA]
¡û
>WENV182825168
OKCG01015517
[OKCG] human gut metagenome; human gut
296
369
+
Gly
GCC
[ENA]
¢þ
>WENV182826380
OKCQ01000497
[OKCQ] human gut metagenome; human gut
1185
1112
-
Gly
GCC
[ENA]
¢þ
>WENV182827284
OKCX01004581
[OKCX] human gut metagenome; human gut
683
756
+
Gly
GCC
[ENA]
¢þ
>WENV182832313
OKEM01000022
[OKEM] human gut metagenome; human gut
11580
11653
+
Gly
GCC
[ENA]
¢þ
>WENV182844041
OKIP01000085
[OKIP] human gut metagenome; human gut
15865
15792
-
Gly
GCC
[ENA]
¢þ
>WENV182859772
OKOP01002412
[OKOP] human gut metagenome; human gut
185
112
-
Gly
GCC
[ENA]
¢þ
>WENV183431962
OMBQ01089391
[OMBQ] human gut metagenome; feces
495
422
-
Gly
GCC
[ENA]
¢þ
>WENV170552838
CXWK01002584
[CXWK] wastewater metagenome; activated sludge
6454
6527
+
Gly
GCC
[ENA]
¢þ
>WENV170558037
CXWL01047099
[CXWL] groundwater metagenome; biofilm material
1209
1284
+
Gly
GCC
[ENA]
¢þ
>WENV170569503
FLMP01219259
[FLMP] seawater metagenome; seawater
6
81
+
Gly
GCC
[ENA]
¢þ
>WENV170658833
JUEG02001081
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
3005
2930
-
Gly
GCC
[ENA]
¢þ
>WENV170950826
MEHZ011520300
[MEHZ] marine metagenome; marine surface water
2931
2856
-
Gly
GCC
[ENA]
¢þ
>WENV170978279
MTKZ01045348
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2065
1992
-
Gly
GCC
[ENA]
¢þ
>C181003441
AP017900
Actinomycetota
Nocardia seriolae UTF1 [AP017900]
5216741
5216816
+
Gly
GCC
-
¡û
>C191208353
LR134352
Actinomycetota
Nocardia asteroides NCTC11293 [LR134352]
891691
891765
+
Gly
GCC
-
¡û
>W141769064
JOFP01000002
Actinomycetota
Pilimelia anulata [JOFP]
1779542
1779617
+
Gly
GCC
[ENA]
¡û
>W1911595125
PNGC01000001
Actinomycetota
Varibaculum cambriense UMB0744 [PNGC]
730964
731037
+
Gly
GCC
[ENA]
¡û
>W1810390993
PXZE01000074
Actinomycetota
Nocardia seriolae HSY-NS01 [PXZE]
6595
6668
+
Gly
GCC
[ENA]
¡û
>W1810391002
PXZE01000095
Actinomycetota
Nocardia seriolae HSY-NS01 [PXZE]
925
850
-
Gly
GCC
[ENA]
¡û
>W1810391018
PXZE01000252
Actinomycetota
Nocardia seriolae HSY-NS01 [PXZE]
2370
2295
-
Gly
GCC
[ENA]
¡û
>W1810532494
QCYJ01000005
Actinomycetota
Nocardia aurea SYSU K10002 [QCYJ]
256593
256520
-
Gly
GCC
[ENA]
¡û
>W1810608604
QGTL01000004
Actinomycetota
Nocardia neocaledoniensis DSM 44717 [QGTL]
557452
557525
+
Gly
GCC
[ENA]
¡û
>W1810623454
QHCP01000005
Actinomycetota
Actinokineospora spheciospongiae CECT 8578 [QHCP]
190495
190568
+
Gly
GCC
[ENA]
¡û
>C10100452
CP002045
Actinomycetota
Arcanobacterium haemolyticum DSM 20595 [CP002045]
911858
911933
+
Gly
GCC
[Ensembl]
¡û
>C10100455
CP002045
Actinomycetota
Arcanobacterium haemolyticum DSM 20595 [CP002045]
912139
912212
+
Gly
GCC
[Ensembl]
¡û
>C10102581
CP001700
Actinomycetota
Catenulispora acidiphila DSM 44928 [CP001700]
8190552
8190479
-
Gly
GCC
[Ensembl]
¡û
>W1511220658
JNCT01000103
Actinomycetota
Nocardia seriolae ZJ0503 [JNCT]
879
804
-
Gly
GCC
[ENA]
¡û
>W1610078800
BDBE01000006
Actinomycetota
Nocardia caishijiensis NBRC 108228 [BDBE]
191361
191286
-
Gly
GCC
[ENA]
¡û
>W1610079040
BDBI01000031
Actinomycetota
Nocardia ignorata NBRC 108230 [BDBI]
158126
158201
+
Gly
GCC
[ENA]
¡û
>W1610079109
BDBK01000001
Actinomycetota
Nocardia inohanensis NBRC 100128 [BDBK]
506748
506675
-
Gly
GCC
[ENA]
¡û
>W1610079111
BDBK01000001
Actinomycetota
Nocardia inohanensis NBRC 100128 [BDBK]
486032
485957
-
Gly
GCC
[ENA]
¡û
>W1610080195
BDCE01000065
Actinomycetota
Nocardia uniformis NBRC 13702 [BDCE]
12970
13043
+
Gly
GCC
[ENA]
¡û
>W1610080197
BDCE01000065
Actinomycetota
Nocardia uniformis NBRC 13702 [BDCE]
34527
34602
+
Gly
GCC
[ENA]
¡û
>W1610080359
BDCH01000019
Actinomycetota
Nocardia crassostreae [BDCH]
342949
343024
+
Gly
GCC
[ENA]
¡û
>W1610080361
BDCH01000019
Actinomycetota
Nocardia crassostreae [BDCH]
357122
357197
+
Gly
GCC
[ENA]
¡û
>W1610080860
BDCT01000027
Actinomycetota
Nocardia arizonensis [BDCT]
81314
81241
-
Gly
GCC
[ENA]
¡û
>W121125307
BAFX01000197
Actinomycetota
Nocardia concava NBRC 100430 [BAFX]
31670
31597
-
Gly
GCC
[ENA]
¡û
>W121125309
BAFX01000197
Actinomycetota
Nocardia concava NBRC 100430 [BAFX]
31287
31212
-
Gly
GCC
[ENA]
¡û
>W121125311
BAFX01000197
Actinomycetota
Nocardia concava NBRC 100430 [BAFX]
11431
11356
-
Gly
GCC
[ENA]
¡û
>W121125734
BAGG01000002
Actinomycetota
Nocardia takedensis NBRC 100417 [BAGG]
55927
56000
+
Gly
GCC
[ENA]
¡û
>W1610597612
LFFB01000004
Actinomycetota
Actinobacteria bacterium casp-actino2 [LFFB]
20868
20943
+
Gly
GCC
[ENA]
¡û
>W1610907686
LSDN01000016
Actinomycetota
Varibaculum cambriense [LSDN]
11607
11682
+
Gly
GCC
[ENA]
¡û
>W1710077359
BDBE01000006
Actinomycetota
Nocardia caishijiensis NBRC 108228 [BDBE]
191361
191286
-
Gly
GCC
[ENA]
¡û
>W1710077599
BDBI01000031
Actinomycetota
Nocardia ignorata NBRC 108230 [BDBI]
158126
158201
+
Gly
GCC
[ENA]
¡û
>W1710077668
BDBK01000001
Actinomycetota
Nocardia inohanensis NBRC 100128 [BDBK]
506748
506675
-
Gly
GCC
[ENA]
¡û
>W1710077670
BDBK01000001
Actinomycetota
Nocardia inohanensis NBRC 100128 [BDBK]
486032
485957
-
Gly
GCC
[ENA]
¡û
>W1710078754
BDCE01000065
Actinomycetota
Nocardia uniformis NBRC 13702 [BDCE]
12970
13043
+
Gly
GCC
[ENA]
¡û
>W1710078756
BDCE01000065
Actinomycetota
Nocardia uniformis NBRC 13702 [BDCE]
34527
34602
+
Gly
GCC
[ENA]
¡û
>W1710078918
BDCH01000019
Actinomycetota
Nocardia crassostreae [BDCH]
342949
343024
+
Gly
GCC
[ENA]
¡û
>W1710078920
BDCH01000019
Actinomycetota
Nocardia crassostreae [BDCH]
357122
357197
+
Gly
GCC
[ENA]
¡û
>W1710079419
BDCT01000027
Actinomycetota
Nocardia arizonensis [BDCT]
81314
81241
-
Gly
GCC
[ENA]
¡û
>W1710568855
FOTX01000001
Actinomycetota
Nocardia asteroides [FOTX]
239973
239898
-
Gly
GCC
[ENA]
¡û
>W1710604059
FUZQ01000005
Actinomycetota
Krasilnikoviella flava [FUZQ]
426455
426530
+
Gly
GCC
[ENA]
¡û
>W1710718859
LFFB01000004
Actinomycetota
Actinobacteria bacterium casp-actino2 [LFFB]
20868
20943
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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